Difference between revisions of "ENST00000439892.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AAAATGGCGACACGTGGTTAGCATTCGTCGCCAACGAGAAATTGGGGTCGGCCCGAAAGCTCTAGAATGCACCCCTCTTCCTCCCCGGGGCCTTCCACCTCCGCGAGTTTTATGACTTAAAAAAGCCCACAGGCTGGTCTGAAGAGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGGTTGGTTGAGGGGTTTAACAAGGCTAAGAAGAGACGGAGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTCACCTCAAGCGATCCTCCCGTCTTGGCCTCCCAAGTGTCAGGATTACGGGCATGTGCTATCACACCCAACCTGATACATTGCCTTTATAAATTTTTTTTTCTTTATTCTAAAAACCAGAAAAAACAAAACTG</dnaseq>| | sequence = <dnaseq>AAAATGGCGACACGTGGTTAGCATTCGTCGCCAACGAGAAATTGGGGTCGGCCCGAAAGCTCTAGAATGCACCCCTCTTCCTCCCCGGGGCCTTCCACCTCCGCGAGTTTTATGACTTAAAAAAGCCCACAGGCTGGTCTGAAGAGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTGACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGGTTGGTTGAGGGGTTTAACAAGGCTAAGAAGAGACGGAGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTCACCTCAAGCGATCCTCCCGTCTTGGCCTCCCAAGTGTCAGGATTACGGGCATGTGCTATCACACCCAACCTGATACATTGCCTTTATAAATTTTTTTTTCTTTATTCTAAAAACCAGAAAAAACAAAACTG</dnaseq>| | ||
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| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-C2orf42-3]] |
Revision as of 10:02, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000439892.1 |
| Source |
Gencode19 |
| Same with |
lnc-C2orf42-3:32,NONHSAT071452 |
| Classification |
intergenic |
| Length |
578 nt |
| Genomic location |
chr2-:70282868..70313399 |
| Exon number |
4 |
| Exons |
70282868..70283042,70310639..70310819,70312679..70312756,70313256..70313399 |
| Genome context |
|
| Sequence |
000001 AAAATGGCGA CACGTGGTTA GCATTCGTCG CCAACGAGAA ATTGGGGTCG GCCCGAAAGC TCTAGAATGC ACCCCTCTTC 000080
000081 CTCCCCGGGG CCTTCCACCT CCGCGAGTTT TATGACTTAA AAAAGCCCAC AGGCTGGTCT GAAGAGGAAG ACAAACATAA 000160 000161 AGATGAAGTG CTTAATTCAA GGTCACACAA TGTCGGGGAT GGACCTCCAG ATTTCCTTAC TGACCTGCAT TATCTTGTGG 000240 000241 ATACCTGAGT GAATTCCACA CCACCCATTT TATAGATGAA ACCACTGAGA CATGGAGCAA TTGACTGAGT AGTCACTGCC 000320 000321 CCACCCCTGC CTGGAGCCTC ACACATGACT CGCCTCCTCT CAGTGACCAC AGGTTGGTTG AGGGGTTTAA CAAGGCTAAG 000400 000401 AAGAGACGGA GTCTTGCTAT GTTGCCCAGG CTGGTCTTGA ACTCCTCACC TCAAGCGATC CTCCCGTCTT GGCCTCCCAA 000480 000481 GTGTCAGGAT TACGGGCATG TGCTATCACA CCCAACCTGA TACATTGCCT TTATAAATTT TTTTTTCTTT ATTCTAAAAA 000560 000561 CCAGAAAAAA CAAAACTG |
Predicted Small Protein
| Name | ENST00000439892.1_smProtein_344:439 |
| Length | 32 |
| Molecular weight | 3518.1886 |
| Aromaticity | 0.0645161290323 |
| Instability index | 49.5903225806 |
| Isoelectric point | 11.4022827148 |
| Runs | 7 |
| Runs residual | 0.0245295698925 |
| Runs probability | 0.0498019027432 |
| Amino acid sequence | MTRLLSVTTGWLRGLTRLRRDGVLLCCPGWS |
| Secondary structure | LEEEEELLLLHHHHHHHHLLLLEEEELLLLL |
| PRMN | - |
| PiMo | - |
