Difference between revisions of "ENST00000584351.1"

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sequence = <dnaseq>AGCTACATCCGTCACCTGACACGGCCCTACCAGGAACAGCCGCGCTCCCGCGGATTCTGGTGCTGCTCGCGTCCCCGCTCCCCTATTCCCCTTATTTTATTCCTGGCTCCCCTCGTCGAAAGTCTTCCATTCTTCAAACTAGATTATTTAAAAATGAAAAAGGAAGAAAGGAAAGCGAGGTCATCTCATTGCTCTATCCGCCAATCAGGAGGCTGAATGTCAGTTTTGAACTAAAAGCCGCTCCGCTCCTCTTCTAGATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAGGACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAAAATTAAAAACACTGGGCATGTGGAAATAATATTCATGCTTTAAATTGTCTTTTCTCTTCACTACACCAGGGGTCCCCAACCCCTAGGCCACAGACTGTGGCCCTAGTGTAGTGAATAGAAAAGACAATTTAAAGCGTGAATATTATTTCCTCATGCCCAGTGTTTTTAATTTTGTACTGGTCTGTGGCTTGTTAGAAACCAGGCTGCACAGCAGAAGGTGGGCAGCAGATATTGAGAAACCACAGAAAGAGAGAAGTTAAATAATTTTCCTGTCAAAGACCACATCAATGATGAAGCCAGAATTTGAGCTCATGTACTTAACCACTGGACTACCTGCCTGCCCTGTCGAGGAACAGCTAAGTGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAGGGTTCAAGCATCACTGTTAGGTGTGCTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAGATCTATTTGGAATGTATCTAACTCCAAAGAAACCATCAGAGGTAACAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTCGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGACACCACACCCGGCGGATAGAGAGAATTTTGACAGTCTCTCCAATGAACGCCTTCACTGATATCCAAAGCATGAAGGACACACCAGGGAAAAACATAGACCTAACACAGGACAAATGGAATTATTAGAAACATTTTCTAGCAGAAGAACACTATTCTGTTGCCATTTGAATCTTTGCTTCTTTCTAGGTTTGACAATGAGCCTATCATATAAGCCCAAATGTAAACAGAAAGAGGTTGAATCAGTCACGATAAGCCCAATTATGCTGTGGTAACAAACAACCTCAAAATCTCATTGGCTTAAAATATACAGAATTATTCTTACTCATGGCACATATCCATCTATCATCTGCAGGGGATCTGCTCACTGAAGTCACTTAGGAACTTGGACTGATGGAACGGCCACTTTTTGGTCACTATATGTATTAATCTGTTTTAATCCTGCTGATAAAGACCCAAAATTGGGAACAAAAAGAAGTTTAACTAGACTTACAGTTCCGCATGGCTGAGGAGGCCTCAGAATCATGGTGGGAGGCGAAAGGCACTTCTTACATGGTGGCAGCAAGAGAAAAATGAGGAAGAAGCAAAAGCGGAAACCTCTGATAAACCCATCAGATCTTATGAGACTTATTCCACTATCAAGAGAATAGCATGGGAAAGACTGGCTCCCATAATTTACCTCCCTCTGGGTCCCTCCCTCAACATGTGGGAATTCTGGGAGAAACAATTCAAGATATGACACATTCATAATTTAAACAGAAGCCTACGAAGAACTCATAAATTAAAAGAAGATAATCTTTTCACAAGGTGATGGAGGCTTTTTATTTTGCCACAAAACCACTGGTGACGTTGCCTGTGGCCACCTTGGAGAAGACACTGGAGGCCTGGGACATGGAGACTGCTTTTCTGCAGAAACCACATCCCTTGGAGTAATGAGCTACACCTACCTCAATTATTCAGTGCAGTACAACACTCCAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGTATTGGCATGATTACAGCTCACTGCAACCTTGAACTCCCAGGCTCAAACCTGAGCAGCTGGGACTACAGATGCACCACCATGCATGGATGATTACGGAGCTAGGAATTTCCTACGAAGCTGGGTGATAAAAGGACATTGGACAAAAACACAGATAGCTTCATTCTATACCAGGATCCATCACTGATTAGCTGTATTATATTTGTCTCTACTGTAATTTGAGGAGAATGATACCTGCTTCTCTATCTTGTTGGGTTTTACAGATGATGTATTGAAAGTTCAATAAAATCTATAAACAAT</dnaseq>|
 
sequence = <dnaseq>AGCTACATCCGTCACCTGACACGGCCCTACCAGGAACAGCCGCGCTCCCGCGGATTCTGGTGCTGCTCGCGTCCCCGCTCCCCTATTCCCCTTATTTTATTCCTGGCTCCCCTCGTCGAAAGTCTTCCATTCTTCAAACTAGATTATTTAAAAATGAAAAAGGAAGAAAGGAAAGCGAGGTCATCTCATTGCTCTATCCGCCAATCAGGAGGCTGAATGTCAGTTTTGAACTAAAAGCCGCTCCGCTCCTCTTCTAGATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAGGACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAAAATTAAAAACACTGGGCATGTGGAAATAATATTCATGCTTTAAATTGTCTTTTCTCTTCACTACACCAGGGGTCCCCAACCCCTAGGCCACAGACTGTGGCCCTAGTGTAGTGAATAGAAAAGACAATTTAAAGCGTGAATATTATTTCCTCATGCCCAGTGTTTTTAATTTTGTACTGGTCTGTGGCTTGTTAGAAACCAGGCTGCACAGCAGAAGGTGGGCAGCAGATATTGAGAAACCACAGAAAGAGAGAAGTTAAATAATTTTCCTGTCAAAGACCACATCAATGATGAAGCCAGAATTTGAGCTCATGTACTTAACCACTGGACTACCTGCCTGCCCTGTCGAGGAACAGCTAAGTGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAGGGTTCAAGCATCACTGTTAGGTGTGCTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAGATCTATTTGGAATGTATCTAACTCCAAAGAAACCATCAGAGGTAACAGTAGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCTCGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGACACCACACCCGGCGGATAGAGAGAATTTTGACAGTCTCTCCAATGAACGCCTTCACTGATATCCAAAGCATGAAGGACACACCAGGGAAAAACATAGACCTAACACAGGACAAATGGAATTATTAGAAACATTTTCTAGCAGAAGAACACTATTCTGTTGCCATTTGAATCTTTGCTTCTTTCTAGGTTTGACAATGAGCCTATCATATAAGCCCAAATGTAAACAGAAAGAGGTTGAATCAGTCACGATAAGCCCAATTATGCTGTGGTAACAAACAACCTCAAAATCTCATTGGCTTAAAATATACAGAATTATTCTTACTCATGGCACATATCCATCTATCATCTGCAGGGGATCTGCTCACTGAAGTCACTTAGGAACTTGGACTGATGGAACGGCCACTTTTTGGTCACTATATGTATTAATCTGTTTTAATCCTGCTGATAAAGACCCAAAATTGGGAACAAAAAGAAGTTTAACTAGACTTACAGTTCCGCATGGCTGAGGAGGCCTCAGAATCATGGTGGGAGGCGAAAGGCACTTCTTACATGGTGGCAGCAAGAGAAAAATGAGGAAGAAGCAAAAGCGGAAACCTCTGATAAACCCATCAGATCTTATGAGACTTATTCCACTATCAAGAGAATAGCATGGGAAAGACTGGCTCCCATAATTTACCTCCCTCTGGGTCCCTCCCTCAACATGTGGGAATTCTGGGAGAAACAATTCAAGATATGACACATTCATAATTTAAACAGAAGCCTACGAAGAACTCATAAATTAAAAGAAGATAATCTTTTCACAAGGTGATGGAGGCTTTTTATTTTGCCACAAAACCACTGGTGACGTTGCCTGTGGCCACCTTGGAGAAGACACTGGAGGCCTGGGACATGGAGACTGCTTTTCTGCAGAAACCACATCCCTTGGAGTAATGAGCTACACCTACCTCAATTATTCAGTGCAGTACAACACTCCAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGTATTGGCATGATTACAGCTCACTGCAACCTTGAACTCCCAGGCTCAAACCTGAGCAGCTGGGACTACAGATGCACCACCATGCATGGATGATTACGGAGCTAGGAATTTCCTACGAAGCTGGGTGATAAAAGGACATTGGACAAAAACACAGATAGCTTCATTCTATACCAGGATCCATCACTGATTAGCTGTATTATATTTGTCTCTACTGTAATTTGAGGAGAATGATACCTGCTTCTCTATCTTGTTGGGTTTTACAGATGATGTATTGAAAGTTCAATAAAATCTATAAACAAT</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:lnc-MTAP-1]]
+
[[Category:Intergenic]][[Category:lnc-MTAP-1]][[Category:NONHSAG051899]]

Revision as of 10:25, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000584351.1

Source

Gencode19

Same with

lnc-MTAP-1:4,NONHSAT130418

Classification

intergenic

Length

2660 nt

Genomic location

chr9+:21994790..22077889

Exon number

13

Exons

21994790..21995160,22029432..22029593,22032673..22032985,22046316..22046448,22046750..22046899,22049105..22049227,22056251..22056386,22058358..22059053,22061952..22062025,22063943..22064017,22065661..22065756,22066234..22066352,22077678..22077889

Genome context

Sequence
000001 AGCTACATCC GTCACCTGAC ACGGCCCTAC CAGGAACAGC CGCGCTCCCG CGGATTCTGG TGCTGCTCGC GTCCCCGCTC 000080
000081 CCCTATTCCC CTTATTTTAT TCCTGGCTCC CCTCGTCGAA AGTCTTCCAT TCTTCAAACT AGATTATTTA AAAATGAAAA 000160
000161 AGGAAGAAAG GAAAGCGAGG TCATCTCATT GCTCTATCCG CCAATCAGGA GGCTGAATGT CAGTTTTGAA CTAAAAGCCG 000240
000241 CTCCGCTCCT CTTCTAGATT TGGAAAACAA GCGAAATTAA ACTAAACCGC TGCACGCCTC TGACGCGACA TCTGGACACG 000320
000321 GCGCGGCGCT GGCGCTGCCG GAGCTGTCGA CCCGGCCTGG CGCCGGACTA GGACTATTTG CCACGACATT TCAAAGGATT 000400
000401 CCAAGAGAGA ATATTGGTGT CCATGCTGTG ATGATTCCTC AGCTCCTCTC ATCTGATCTC CGTCCTGGCC CCCATGACTT 000480
000481 TCTTTGTGGT AGTTAGGGTG TGGTATGTGC CACTGAGGCC CACACCTATT GCTGCAATTT ATAGCACTGA TCTGTCATCA 000560
000561 ATACCACTTG CTGTCTTGGA TGTGAAGATG ATTTTTCCTG CAGGGATTCC CTCTACAAAA TTAAAAACAC TGGGCATGTG 000640
000641 GAAATAATAT TCATGCTTTA AATTGTCTTT TCTCTTCACT ACACCAGGGG TCCCCAACCC CTAGGCCACA GACTGTGGCC 000720
000721 CTAGTGTAGT GAATAGAAAA GACAATTTAA AGCGTGAATA TTATTTCCTC ATGCCCAGTG TTTTTAATTT TGTACTGGTC 000800
000801 TGTGGCTTGT TAGAAACCAG GCTGCACAGC AGAAGGTGGG CAGCAGATAT TGAGAAACCA CAGAAAGAGA GAAGTTAAAT 000880
000881 AATTTTCCTG TCAAAGACCA CATCAATGAT GAAGCCAGAA TTTGAGCTCA TGTACTTAAC CACTGGACTA CCTGCCTGCC 000960
000961 CTGTCGAGGA ACAGCTAAGT GTCCCTTTTG ATGAGAAGAA TAAGCCTCAT TCTGATTCAA CAGCAGAGAT CAAAGAAAAG 001040
001041 ACTTCTGTTT TCTGGCCACC AGATATATGT TATCTGTGCT TAAAGAATTG AAAAACACAC ATCAAAGGAG AATTTTCTTG 001120
001121 GAAAGAGAGG GTTCAAGCAT CACTGTTAGG TGTGCTGGAA TCCTTTCCCG AGTCAGTACT GCTTTCTAGA AGAAAACCGG 001200
001201 GGAGATCTAT TTGGAATGTA TCTAACTCCA AAGAAACCAT CAGAGGTAAC AGTAGAGACG GGGTTTCACC ATGTTGGCCA 001280
001281 GACTGGTCTT GAACTCTCGA CCTCGTGATT CGCCCGCCTC GGCCTCCCAA AGTGCTGGGA TTACAGGTGT GAGACACCAC 001360
001361 ACCCGGCGGA TAGAGAGAAT TTTGACAGTC TCTCCAATGA ACGCCTTCAC TGATATCCAA AGCATGAAGG ACACACCAGG 001440
001441 GAAAAACATA GACCTAACAC AGGACAAATG GAATTATTAG AAACATTTTC TAGCAGAAGA ACACTATTCT GTTGCCATTT 001520
001521 GAATCTTTGC TTCTTTCTAG GTTTGACAAT GAGCCTATCA TATAAGCCCA AATGTAAACA GAAAGAGGTT GAATCAGTCA 001600
001601 CGATAAGCCC AATTATGCTG TGGTAACAAA CAACCTCAAA ATCTCATTGG CTTAAAATAT ACAGAATTAT TCTTACTCAT 001680
001681 GGCACATATC CATCTATCAT CTGCAGGGGA TCTGCTCACT GAAGTCACTT AGGAACTTGG ACTGATGGAA CGGCCACTTT 001760
001761 TTGGTCACTA TATGTATTAA TCTGTTTTAA TCCTGCTGAT AAAGACCCAA AATTGGGAAC AAAAAGAAGT TTAACTAGAC 001840
001841 TTACAGTTCC GCATGGCTGA GGAGGCCTCA GAATCATGGT GGGAGGCGAA AGGCACTTCT TACATGGTGG CAGCAAGAGA 001920
001921 AAAATGAGGA AGAAGCAAAA GCGGAAACCT CTGATAAACC CATCAG