Difference between revisions of "NONHSAT129523"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>attacaaggcggaagtcctgcccgagaggacagtccccaggccttgctaagcatgcgtggtatcaagaggtgcattgaggcgctcctgcagcctcctcccggcacgggactcctcacaacccccagcctcagcttccctgacagggcaggggctcactcttctccactccgggccaggaacgcagcctgcttgccttttgtccaattgggtgctctttctttgcgactgatacaaagtgggaacaaactccgcttccggtgaTGCCCGGGCCCCAGGAGGCTGGGGGAGAAGTGCACGCTGCCCAGCCTTCAACCTGAACTGCCCCCAGCACTTCCGAGCCCCGACCCCTGCAGCTGTGAGGGCCCAGGGGCTGCTGGCTGCCAGGACCACCGCATTGCAGAGGTCTCCCTTGCAGCAAGAGATCTGGGAGTCCACAACGGCACTTAACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGACGCTCACTTTCTGGGAGACACAGACCCCATCCAGGAAGGGGCACGAGACCACGCTGCAGGAGGCCCCTTCCAAGACCGCCAAGCATCTGTAGCAGCGCAGACCCTGAGCTGGGAGAGAGGGCAAGaaaacacacccctggtggagatttaagatgctaatgacacatgcgacgtatgagcaagcaggtgcagctactgcacgtgtgcacccagaggacccccccagaacatgcttcctagcaacacctctgcccacccgctgattctctcggcaccacgggaaccaccttctctactctcactgaacacccctgggatgtatctgtaaaaattggaacacctttcggctagaaaccagaggaagccgctcatgacacccgggagctcacagaggctctgaagtttctattcaagaaaacaactccagatggggctgatctggaagacaagtaacatcttccttttcttggtgctcgcctgccgtgctctaggtgcttttagagatgctggtctgtgtgctagggaagcgatgaaccatactgttagtctattaaacataactcaacctggctggctttccatgactaccaaacgctgggaatatgccagacctgtgcccgtggaagactctggcctcccagcacacctccaggaacaaactccctggcccgcaggatagggatagcagccccaaccgtcaatacaaagggattttactgagtgggctcatgggttctttaagttccccctcttaacgatcaacggtaattcaaacgtcccaaaaggagaaatgctttcttagcatatcttttacctggagtatttccccttctgcctttacagcaatcatgccagttctaccacttttgcaagaaagctccaagagagtcagtgtagctgaaactttgtcactgggtcacctatCTAGTCCATATGTCTGCAGGAATTATACTGATAAATGGACAACTCACCATGCAATCAATCTCCCGCTCTATCCTGTTCCCTGACCGGCATGGTTTCTACTTCCTGTCAGCACAACTAGGACGTCTGGTTTCTGCTGGGCT</dnaseq>|
 
sequence = <dnaseq>attacaaggcggaagtcctgcccgagaggacagtccccaggccttgctaagcatgcgtggtatcaagaggtgcattgaggcgctcctgcagcctcctcccggcacgggactcctcacaacccccagcctcagcttccctgacagggcaggggctcactcttctccactccgggccaggaacgcagcctgcttgccttttgtccaattgggtgctctttctttgcgactgatacaaagtgggaacaaactccgcttccggtgaTGCCCGGGCCCCAGGAGGCTGGGGGAGAAGTGCACGCTGCCCAGCCTTCAACCTGAACTGCCCCCAGCACTTCCGAGCCCCGACCCCTGCAGCTGTGAGGGCCCAGGGGCTGCTGGCTGCCAGGACCACCGCATTGCAGAGGTCTCCCTTGCAGCAAGAGATCTGGGAGTCCACAACGGCACTTAACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGACGCTCACTTTCTGGGAGACACAGACCCCATCCAGGAAGGGGCACGAGACCACGCTGCAGGAGGCCCCTTCCAAGACCGCCAAGCATCTGTAGCAGCGCAGACCCTGAGCTGGGAGAGAGGGCAAGaaaacacacccctggtggagatttaagatgctaatgacacatgcgacgtatgagcaagcaggtgcagctactgcacgtgtgcacccagaggacccccccagaacatgcttcctagcaacacctctgcccacccgctgattctctcggcaccacgggaaccaccttctctactctcactgaacacccctgggatgtatctgtaaaaattggaacacctttcggctagaaaccagaggaagccgctcatgacacccgggagctcacagaggctctgaagtttctattcaagaaaacaactccagatggggctgatctggaagacaagtaacatcttccttttcttggtgctcgcctgccgtgctctaggtgcttttagagatgctggtctgtgtgctagggaagcgatgaaccatactgttagtctattaaacataactcaacctggctggctttccatgactaccaaacgctgggaatatgccagacctgtgcccgtggaagactctggcctcccagcacacctccaggaacaaactccctggcccgcaggatagggatagcagccccaaccgtcaatacaaagggattttactgagtgggctcatgggttctttaagttccccctcttaacgatcaacggtaattcaaacgtcccaaaaggagaaatgctttcttagcatatcttttacctggagtatttccccttctgcctttacagcaatcatgccagttctaccacttttgcaagaaagctccaagagagtcagtgtagctgaaactttgtcactgggtcacctatCTAGTCCATATGTCTGCAGGAATTATACTGATAAATGGACAACTCACCATGCAATCAATCTCCCGCTCTATCCTGTTCCCTGACCGGCATGGTTTCTACTTCCTGTCAGCACAACTAGGACGTCTGGTTTCTGCTGGGCT</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG051472]]

Revision as of 10:47, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT129523

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1554 nt

Genomic location

chr8+:144120626..144135355

Exon number

6

Exons

144120626..144120986,144124595..144124679,144126066..144126234,144129096..144129231,144130626..144130715,144134643..144135355

Genome context

Sequence
000001 attacaaggc ggaagtcctg cccgagagga cagtccccag gccttgctaa gcatgcgtgg tatcaagagg tgcattgagg 000080
000081 cgctcctgca gcctcctccc ggcacgggac tcctcacaac ccccagcctc agcttccctg acagggcagg ggctcactct 000160
000161 tctccactcc gggccaggaa cgcagcctgc ttgccttttg tccaattggg tgctctttct ttgcgactga tacaaagtgg 000240
000241 gaacaaactc cgcttccggt gaTGCCCGGG CCCCAGGAGG CTGGGGGAGA AGTGCACGCT GCCCAGCCTT CAACCTGAAC 000320
000321 TGCCCCCAGC ACTTCCGAGC CCCGACCCCT GCAGCTGTGA GGGCCCAGGG GCTGCTGGCT GCCAGGACCA CCGCATTGCA 000400
000401 GAGGTCTCCC TTGCAGCAAG AGATCTGGGA GTCCACAACG GCACTTAACC TGCCCTCTGC CCTGGCACCC CAGGGACTCA 000480
000481 CTGCCAAAGA CGCTCACTTT CTGGGAGACA CAGACCCCAT CCAGGAAGGG GCACGAGACC ACGCTGCAGG AGGCCCCTTC 000560
000561 CAAGACCGCC AAGCATCTGT AGCAGCGCAG ACCCTGAGCT GGGAGAGAGG GCAAGaaaac acacccctgg tggagattta 000640
000641 agatgctaat gacacatgcg acgtatgagc aagcaggtgc agctactgca cgtgtgcacc cagaggaccc ccccagaaca 000720
000721 tgcttcctag caacacctct gcccacccgc tgattctctc ggcaccacgg gaaccacctt ctctactctc actgaacacc 000800
000801 cctgggatgt atctgtaaaa attggaacac ctttcggcta gaaaccagag gaagccgctc atgacacccg ggagctcaca 000880
000881 gaggctctga agtttctatt caagaaaaca actccagatg gggctgatct ggaagacaag taacatcttc cttttcttgg 000960
000961 tgctcgcctg ccgtgctcta ggtgctttta gagatgctgg tctgtgtgct agggaagcga tgaaccatac tgttagtcta 001040
001041 ttaaacataa ctcaacctgg ctggctttcc atgactacca aacgctggga atatgccaga cctgtgcccg tggaagactc 001120
001121 tggcctccca gcacacctcc aggaacaaac tccctggccc gcaggatagg gatagcagcc ccaaccgtca atacaaaggg 001200
001201 attttactga gtgggctcat gggttcttta agttccccct cttaacgatc aacggtaatt caaacgtccc aaaaggagaa 001280
001281 atgctttctt agcatatctt ttacctggag tatttcccct tctgccttta cagcaatcat gccagttcta ccacttttgc 001360
001361 aagaaagctc caagagagtc agtgtagctg aaactttgtc actgggtcac ctatCTAGTC CATATGTCTG CAGGAATTAT 001440
001441 ACTGATAAAT GGACAACTCA CCATGCAATC AATCTCCCGC TCTATCCTGT TCCCTGACCG GCATGGTTTC TACTTCCTGT 001520
001521 CAGCACAACT AGGACGTCTG GTTTCTGCTG GGCT
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Predicted Small Protein

Name NONHSAT129523_smProtein_917:1168
Length 84
Molecular weight 9252.6643
Aromaticity 0.0963855421687
Instability index 69.6337349398
Isoelectric point 7.84796142578
Runs 13
Runs residual 0.0165997322624
Runs probability 0.0353430353431
Amino acid sequence MGLIWKTSNIFLFLVLACRALGAFRDAGLCAREAMNHTVSLLNITQPGWLSMTTKRWEYA
RPVPVEDSGLPAHLQEQTPWPAG
Secondary structure LLLEEELLHHHHHHHHHHHHHHHHHHHLHHHHHHHHLLHHHHHLLLLLLLLLLLLLHHHL
LLLLLLLLLLLLLHHHLLLLLLL
PRMN -
PiMo -