Difference between revisions of "Lnc-PPA2-1:1"

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sequence = <dnaseq>AATGGGTCTCAAAATTCTGTGACAAATTTTTGGTCAAGTTGTTTCCAGTAAAAAGTACTGATTTTAAAAACTAATAACTTAAAACTGCCACATGCAAAGAAAGAAAACCAAAGTGGTCCACAAAACATTCTCCTTTCCTTCTGAAGGTTTTATGATGCATTGTTATCATTAACCAGTCTTTTACTACTAAACTTCAATGGCCAATTGAAACAAACAGTTCTGAGACCATTCTTCCACCACTGATTAACAGTGGGGTGGCAGGTAGTAGGGATAATATTTATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCACTGCTTTGATGACACCCACCGCAACTGTCTGTCTGATATCATGAACAGCAAAGCGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAACATACACGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAATGGCGATCAGTCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATGTGAGCCGTGTGGCAATCCAATACAGGGGCATAGCCAGCACTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGTCCTTTTTGCTGTCACCAGCAACGTTGCCACGACGAACATCCTTGACAGACACATTCTTGACATTGAAGCCCACATTGTCCCCAGGAAGAACTTCACTCAAAGCTTCATGGTGCATTTCAACAGATTTTACTTCTGTTGCAACGTTGACTGGAGCAAAGGTGACCACCATACCAGGTTTGAGAACACCAGTCTCCACTCAGCCAACAGGAACAGTACCAATACCACCAATTTTGTAGACATCCTGGAGAGGCAGGCACAAGGGCTTGTCAGTTGGACGAGTTGGTGGTAGGATGCAGTCAAGAGCCTCAAGCAGCGTGGTTCCACTGGCATTGCCATCCTTACGGGTGACTTTCCATCCCTTGAACCAAGGCATGTTAGCACTTGGCTCCAGCGTGTTGTCACCATTCCAACCAGAAACTGGCACAAATGCTACTGTGTCGGTGTTGTGGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTATGGCTGTAGGGTGGCTCAGTGGAATCCATTTTGTTAACACCAACAATTAGTTGTTTCACACCCAGTGTGTAAGCCAGAAGGGCGTGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCAAAACCAGCAGCAACAATCAAGACAGCACAGTCAGCCTGAGATGTCCCTGTATATCAATGGTGATACCATGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCACTTTCCCATCTCAGCAGCCTCCTTCTCAAATTTTTCGATGGTTCTTTTGTCGACGCCACCGCATTTGTAGATCAGATGGCCAGTAGTGGTGGACTTGCCCGAATCTACGTGTCCGATGATCACAGTGTTGATATGAGTCTTTTCCTTTCTCGTTCTGGCTTATAGGTAGGGGTAGTTTTCACGATACCTGTGTTCTG</dnaseq>|
 
sequence = <dnaseq>AATGGGTCTCAAAATTCTGTGACAAATTTTTGGTCAAGTTGTTTCCAGTAAAAAGTACTGATTTTAAAAACTAATAACTTAAAACTGCCACATGCAAAGAAAGAAAACCAAAGTGGTCCACAAAACATTCTCCTTTCCTTCTGAAGGTTTTATGATGCATTGTTATCATTAACCAGTCTTTTACTACTAAACTTCAATGGCCAATTGAAACAAACAGTTCTGAGACCATTCTTCCACCACTGATTAACAGTGGGGTGGCAGGTAGTAGGGATAATATTTATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCACTGCTTTGATGACACCCACCGCAACTGTCTGTCTGATATCATGAACAGCAAAGCGACCCAAAGGTGGATAGTCTGAGAAGCTCTCAACATACACGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAATGGCGATCAGTCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATGTGAGCCGTGTGGCAATCCAATACAGGGGCATAGCCAGCACTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGTCCTTTTTGCTGTCACCAGCAACGTTGCCACGACGAACATCCTTGACAGACACATTCTTGACATTGAAGCCCACATTGTCCCCAGGAAGAACTTCACTCAAAGCTTCATGGTGCATTTCAACAGATTTTACTTCTGTTGCAACGTTGACTGGAGCAAAGGTGACCACCATACCAGGTTTGAGAACACCAGTCTCCACTCAGCCAACAGGAACAGTACCAATACCACCAATTTTGTAGACATCCTGGAGAGGCAGGCACAAGGGCTTGTCAGTTGGACGAGTTGGTGGTAGGATGCAGTCAAGAGCCTCAAGCAGCGTGGTTCCACTGGCATTGCCATCCTTACGGGTGACTTTCCATCCCTTGAACCAAGGCATGTTAGCACTTGGCTCCAGCGTGTTGTCACCATTCCAACCAGAAACTGGCACAAATGCTACTGTGTCGGTGTTGTGGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTATGGCTGTAGGGTGGCTCAGTGGAATCCATTTTGTTAACACCAACAATTAGTTGTTTCACACCCAGTGTGTAAGCCAGAAGGGCGTGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCAAAACCAGCAGCAACAATCAAGACAGCACAGTCAGCCTGAGATGTCCCTGTATATCAATGGTGATACCATGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCACTTTCCCATCTCAGCAGCCTCCTTCTCAAATTTTTCGATGGTTCTTTTGTCGACGCCACCGCATTTGTAGATCAGATGGCCAGTAGTGGTGGACTTGCCCGAATCTACGTGTCCGATGATCACAGTGTTGATATGAGTCTTTTCCTTTCTCGTTCTGGCTTATAGGTAGGGGTAGTTTTCACGATACCTGTGTTCTG</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:lnc-PPA2-1]]

Revision as of 11:10, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-PPA2-1:1

Source

LNCipedia2.1

Same with

,

Classification

intergenic

Length

1625 nt

Genomic location

chr4-:106405805..106407514

Exon number

2

Exons

106405805..106406072,106406158..106407514

Genome context

Sequence
000001 AATGGGTCTC AAAATTCTGT GACAAATTTT TGGTCAAGTT GTTTCCAGTA AAAAGTACTG ATTTTAAAAA CTAATAACTT 000080
000081 AAAACTGCCA CATGCAAAGA AAGAAAACCA AAGTGGTCCA CAAAACATTC TCCTTTCCTT CTGAAGGTTT TATGATGCAT 000160
000161 TGTTATCATT AACCAGTCTT TTACTACTAA ACTTCAATGG CCAATTGAAA CAAACAGTTC TGAGACCATT CTTCCACCAC 000240
000241 TGATTAACAG TGGGGTGGCA GGTAGTAGGG ATAATATTTA TTTAGCCTTC TGAGCTTTCT GGGCAGACTT GGTGACCTTG 000320
000321 CCAGCTCCAG CAGCCTTCTT GTCCACTGCT TTGATGACAC CCACCGCAAC TGTCTGTCTG ATATCATGAA CAGCAAAGCG 000400
000401 ACCCAAAGGT GGATAGTCTG AGAAGCTCTC AACATACACG GGCTTGCCAG GAACCATATC AACAATGGCA GCATCACCAG 000480
000481 ACTTCAAGAA TTTAGGGCCA TCTTCCAGCT TTTTACCAGA ATGGCGATCA GTCTTTTCCT TCAGCTCAGC AAACTTGCAT 000560
000561 GCAATGTGAG CCGTGTGGCA ATCCAATACA GGGGCATAGC CAGCACTTAT TTGGCCTGGA TGGTTCAGGA TAATCACCTG 000640
000641 AGCAGTGAAG CCAGCTGCTT CCATTGGTGG GTCCTTTTTG CTGTCACCAG CAACGTTGCC ACGACGAACA TCCTTGACAG 000720
000721 ACACATTCTT GACATTGAAG CCCACATTGT CCCCAGGAAG AACTTCACTC AAAGCTTCAT GGTGCATTTC AACAGATTTT 000800
000801 ACTTCTGTTG CAACGTTGAC TGGAGCAAAG GTGACCACCA TACCAGGTTT GAGAACACCA GTCTCCACTC AGCCAACAGG 000880
000881 AACAGTACCA ATACCACCAA TTTTGTAGAC ATCCTGGAGA GGCAGGCACA AGGGCTTGTC AGTTGGACGA GTTGGTGGTA 000960
000961 GGATGCAGTC AAGAGCCTCA AGCAGCGTGG TTCCACTGGC ATTGCCATCC TTACGGGTGA CTTTCCATCC CTTGAACCAA 001040
001041 GGCATGTTAG CACTTGGCTC CAGCGTGTTG TCACCATTCC AACCAGAAAC TGGCACAAAT GCTACTGTGT CGGTGTTGTG 001120
001121 GCCAATTTTC TTAATGTAAG TGCTGACTTC CTTAACAATT TCCTCATATC TCTTATGGCT GTAGGGTGGC TCAGTGGAAT 001200
001201 CCATTTTGTT AACACCAACA ATTAGTTGTT TCACACCCAG TGTGTAAGCC AGAAGGGCGT GCTCTCGGGT CTGCCCATTC 001280
001281 TTGGAGATAC CAGCTTCAAA TTCACCAAAA CCAGCAGCAA CAATCAAGAC AGCACAGTCA GCCTGAGATG TCCCTGTATA 001360
001361 TCAATGGTGA TACCATGTTC ACGCTCAGCT TTCAGTTTAT CCAAGACCCA GGCATACTTG AAGGAGCACT TTCCCATCTC 001440
001441 AGCAGCCTCC TTCTCAAATT TTTCGATGGT TCTTTTGTCG ACGCCACCGC ATTTGTAGAT CAGATGGCCA GTAGTGGTGG 001520
001521 ACTTGCCCGA ATCTACGTGT CCGATGATCA CAGTGTTGAT ATGAGTCTTT TCCTTTCTCG TTCTGGCTTA TAGGTAGGGG 001600
001601 TAGTTTTCAC GATACCTGTG TTCTG
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