Difference between revisions of "NONHSAT112698"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>GTGCCATCTTTACCTATGTGATTAAGACCATAGTTACTGGGCACCAGACCCTGTGCCCACTTTGCCTAGGATTTCCCCCAGGCCCTGCCCTTCCTCTGCCCCTCAGCTCCAACTCACATCCTGGAAGGTGTGCATGGTGACAATGATCTCATTGGTTAGTGCTGAACAGTCCTCATTCTCATCGGCTATAAAGAGAAGGTGACAGCGTGGCCAGTGAGTGAGGAAACGGCCTGGGGTAAGAGCAGGAGAAGGTAAGGGACTCTATAGTAAGACTTGGGAAATCTGAGGAAGCTGGGGTCCAACACTCCATTTTTCTCTCTGCAAAGATCTGTGTGGCTCCTGGCCTTTCAGGGAAGGTCTGTGTGCATGGCTGCATGGGGGTCTGCAGAGCTCCAGGGTTACTgggagggaaggagaggagacaggatgggaaaagagaggggaggaggTACACACAGGGCTCCCGGACTACCTGCTTTTCTCCGGAAGCAGAAGGAGCGGAAGGGGCACTTTCCATGCCAGATGTGGAGATGGGGAACCAGCTGGCAACTGCTGTCATCCACATTCTCCCAACCTGatgtggtgacctaatgtacagtctgaccaactgtatgcggAGATGAGAGCCAGGAGCTGTTACCTGGTGGGATGAGCAAGGAGATGCCTGTATCCTGGAGCATCAGGCAACCGCCGCGGTGATCCACCTCTCGAGCCGAAAACACCAACAGTT</dnaseq>|
 
sequence = <dnaseq>GTGCCATCTTTACCTATGTGATTAAGACCATAGTTACTGGGCACCAGACCCTGTGCCCACTTTGCCTAGGATTTCCCCCAGGCCCTGCCCTTCCTCTGCCCCTCAGCTCCAACTCACATCCTGGAAGGTGTGCATGGTGACAATGATCTCATTGGTTAGTGCTGAACAGTCCTCATTCTCATCGGCTATAAAGAGAAGGTGACAGCGTGGCCAGTGAGTGAGGAAACGGCCTGGGGTAAGAGCAGGAGAAGGTAAGGGACTCTATAGTAAGACTTGGGAAATCTGAGGAAGCTGGGGTCCAACACTCCATTTTTCTCTCTGCAAAGATCTGTGTGGCTCCTGGCCTTTCAGGGAAGGTCTGTGTGCATGGCTGCATGGGGGTCTGCAGAGCTCCAGGGTTACTgggagggaaggagaggagacaggatgggaaaagagaggggaggaggTACACACAGGGCTCCCGGACTACCTGCTTTTCTCCGGAAGCAGAAGGAGCGGAAGGGGCACTTTCCATGCCAGATGTGGAGATGGGGAACCAGCTGGCAACTGCTGTCATCCACATTCTCCCAACCTGatgtggtgacctaatgtacagtctgaccaactgtatgcggAGATGAGAGCCAGGAGCTGTTACCTGGTGGGATGAGCAAGGAGATGCCTGTATCCTGGAGCATCAGGCAACCGCCGCGGTGATCCACCTCTCGAGCCGAAAACACCAACAGTT</dnaseq>|
 
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[[Category:Antisense]]
+
[[Category:Antisense]][[Category:NONHSAG043754]]

Revision as of 11:28, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT112698

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

730 nt

Genomic location

chr6+:40999303..41002518

Exon number

2

Exons

40999303..40999879,41002366..41002518

Genome context

Sequence
000001 GTGCCATCTT TACCTATGTG ATTAAGACCA TAGTTACTGG GCACCAGACC CTGTGCCCAC TTTGCCTAGG ATTTCCCCCA 000080
000081 GGCCCTGCCC TTCCTCTGCC CCTCAGCTCC AACTCACATC CTGGAAGGTG TGCATGGTGA CAATGATCTC ATTGGTTAGT 000160
000161 GCTGAACAGT CCTCATTCTC ATCGGCTATA AAGAGAAGGT GACAGCGTGG CCAGTGAGTG AGGAAACGGC CTGGGGTAAG 000240
000241 AGCAGGAGAA GGTAAGGGAC TCTATAGTAA GACTTGGGAA ATCTGAGGAA GCTGGGGTCC AACACTCCAT TTTTCTCTCT 000320
000321 GCAAAGATCT GTGTGGCTCC TGGCCTTTCA GGGAAGGTCT GTGTGCATGG CTGCATGGGG GTCTGCAGAG CTCCAGGGTT 000400
000401 ACTgggaggg aaggagagga gacaggatgg gaaaagagag gggaggaggT ACACACAGGG CTCCCGGACT ACCTGCTTTT 000480
000481 CTCCGGAAGC AGAAGGAGCG GAAGGGGCAC TTTCCATGCC AGATGTGGAG ATGGGGAACC AGCTGGCAAC TGCTGTCATC 000560
000561 CACATTCTCC CAACCTGatg tggtgaccta atgtacagtc tgaccaactg tatgcggAGA TGAGAGCCAG GAGCTGTTAC 000640
000641 CTGGTGGGAT GAGCAAGGAG ATGCCTGTAT CCTGGAGCAT CAGGCAACCG CCGCGGTGAT CCACCTCTCG AGCCGAAAAC 000720
000721 ACCAACAGTT
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Predicted Small Protein

Name NONHSAT112698_smProtein_374:577
Length 68
Molecular weight 7160.0577
Aromaticity 0.0298507462687
Instability index 62.9104477612
Isoelectric point 7.82745361328
Runs 12
Runs residual 0.0357896381965
Runs probability 0.0333348053937
Amino acid sequence MGVCRAPGLLGGKERRQDGKREGRRYTQGSRTTCFSPEAEGAEGALSMPDVEMGNQLATA
VIHILPT
Secondary structure LLEELLLLLLLLLLLLLLLLLLLLEELLLLEEEEELLLLLLLLLLLLLLLHHHLHHHHHE
EEEELLL
PRMN -
PiMo -