Difference between revisions of "NONHSAT131480"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CGCCAGTAACAAACATGGCTCCCTGAAGCCGCTCAGGCTCAAGAGCAACATGGGGGTCTGCACTTAATCGCTCCTCTCCGGGGGCGGCCATACTGAGGAGGCATCTCTTCCGTGCAGGCAGGCTGTCCTGGGGACCTCAGAGATTCTCTCCAGCGGCAGCGGAAAATGGGCAATGGGTGGATTCGGGTCCAGATTCTGGCAGGAGGGAGTTTGGGATCGAGATCTGGAAAAAAGCACTAGACTGGAAGAGGACGCGATGGAGTCGGAGCCGCTGGCGGGGACAAAACCAGAGGCGGTGGAAGGCGCCGGTGGGAGGCAAGGCACGGATGGACTTTACCTGCGCACGCGTCGCAGCCATCTCCGCGCACAGTGGTGGCCACCGCGACTGGTGCTGAAGTGTCGGCGCGTGCCGGGCGCTCCGCTGGGACCGGGGTTGCTGGccctgagtctgagctttctcatctgtacgattgggacaagtacagtaaccctcgcccgtcaagacgggccagggctgtcgcgagggtcCACGCCTTAGAGCAGGCACCTATCTTCTGCAGGGCCCTGAGATGGGGTCTGACTCAGTTCCTGCGGGGAACTTCACCAGTACCCAgtcagtgcccttcagttaaagaccaccaggagcacacttgtaattacattgcagcaaggaatggggtactatgggtcatctcagtgggaggagttagagagaaactattatacgatttgggctttaattggttgatttcggacaggatctcagaaagtgaagactttagattggatgctgtcagaaagcaggagcaatatgattattaagtattttGTGGGTGGCATCAAGACCTTGTTttttatctgcacttagacaacattataaagtgcccttgtttttgtttgcacttatcacggtctcagattaaccttctgaagttgatattctgtgagattgtttatgtccaacaggaaaacaaaatgtcctggccatgagcatcagactagcgtgtaataacattaaggcctGTGACCcaaatattgacagaattgaagttagaaatagttctacagtaatagagtcttcaatactccatttaaaataatgcatagaagctggacatggtggctcatgcctttaatctcagctacctgggaggctgcggcaggtggattgcttgaggtcaggcgttcgagaccagcctggGCcttttggcctgtctcggcttttaacataccttcctcactcagcttaatcatttctcactttagatttataataagagatgtgtgactcttactttcacttgaacacagaggcctttatagagttattaattggcctaatttcaatattgctgtgtctcagaaaacagacctgaggagagggggagatggaggaagggcagatcgatggaaccattcgaatacacataggtatcaattaagctcattgtcttttggaccatggcttgtgatgccccaaaacaatgacaatagtaatatcaatgatcactgataacagatcaccataacagatataataataacaaaacatttgaaatactacaagaattacaaagatgtaacacagaggtgcaaaataagcacatgctaccagaaaagtggcactggtagacttgcttggtgcacggttgctacaaaccttcaacctgtaaaaactgcaatatctgagaagcataataaagtgaagtgc</dnaseq>| | sequence = <dnaseq>CGCCAGTAACAAACATGGCTCCCTGAAGCCGCTCAGGCTCAAGAGCAACATGGGGGTCTGCACTTAATCGCTCCTCTCCGGGGGCGGCCATACTGAGGAGGCATCTCTTCCGTGCAGGCAGGCTGTCCTGGGGACCTCAGAGATTCTCTCCAGCGGCAGCGGAAAATGGGCAATGGGTGGATTCGGGTCCAGATTCTGGCAGGAGGGAGTTTGGGATCGAGATCTGGAAAAAAGCACTAGACTGGAAGAGGACGCGATGGAGTCGGAGCCGCTGGCGGGGACAAAACCAGAGGCGGTGGAAGGCGCCGGTGGGAGGCAAGGCACGGATGGACTTTACCTGCGCACGCGTCGCAGCCATCTCCGCGCACAGTGGTGGCCACCGCGACTGGTGCTGAAGTGTCGGCGCGTGCCGGGCGCTCCGCTGGGACCGGGGTTGCTGGccctgagtctgagctttctcatctgtacgattgggacaagtacagtaaccctcgcccgtcaagacgggccagggctgtcgcgagggtcCACGCCTTAGAGCAGGCACCTATCTTCTGCAGGGCCCTGAGATGGGGTCTGACTCAGTTCCTGCGGGGAACTTCACCAGTACCCAgtcagtgcccttcagttaaagaccaccaggagcacacttgtaattacattgcagcaaggaatggggtactatgggtcatctcagtgggaggagttagagagaaactattatacgatttgggctttaattggttgatttcggacaggatctcagaaagtgaagactttagattggatgctgtcagaaagcaggagcaatatgattattaagtattttGTGGGTGGCATCAAGACCTTGTTttttatctgcacttagacaacattataaagtgcccttgtttttgtttgcacttatcacggtctcagattaaccttctgaagttgatattctgtgagattgtttatgtccaacaggaaaacaaaatgtcctggccatgagcatcagactagcgtgtaataacattaaggcctGTGACCcaaatattgacagaattgaagttagaaatagttctacagtaatagagtcttcaatactccatttaaaataatgcatagaagctggacatggtggctcatgcctttaatctcagctacctgggaggctgcggcaggtggattgcttgaggtcaggcgttcgagaccagcctggGCcttttggcctgtctcggcttttaacataccttcctcactcagcttaatcatttctcactttagatttataataagagatgtgtgactcttactttcacttgaacacagaggcctttatagagttattaattggcctaatttcaatattgctgtgtctcagaaaacagacctgaggagagggggagatggaggaagggcagatcgatggaaccattcgaatacacataggtatcaattaagctcattgtcttttggaccatggcttgtgatgccccaaaacaatgacaatagtaatatcaatgatcactgataacagatcaccataacagatataataataacaaaacatttgaaatactacaagaattacaaagatgtaacacagaggtgcaaaataagcacatgctaccagaaaagtggcactggtagacttgcttggtgcacggttgctacaaaccttcaacctgtaaaaactgcaatatctgagaagcataataaagtgaagtgc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG052382]] |
Revision as of 11:36, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131480 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1711 nt |
| Genomic location |
chr9-:46842616..46844326 |
| Exon number |
1 |
| Exons |
46842616..46844326 |
| Genome context |
|
| Sequence |
000001 CGCCAGTAAC AAACATGGCT CCCTGAAGCC GCTCAGGCTC AAGAGCAACA TGGGGGTCTG CACTTAATCG CTCCTCTCCG 000080
000081 GGGGCGGCCA TACTGAGGAG GCATCTCTTC CGTGCAGGCA GGCTGTCCTG GGGACCTCAG AGATTCTCTC CAGCGGCAGC 000160 000161 GGAAAATGGG CAATGGGTGG ATTCGGGTCC AGATTCTGGC AGGAGGGAGT TTGGGATCGA GATCTGGAAA AAAGCACTAG 000240 000241 ACTGGAAGAG GACGCGATGG AGTCGGAGCC GCTGGCGGGG ACAAAACCAG AGGCGGTGGA AGGCGCCGGT GGGAGGCAAG 000320 000321 GCACGGATGG ACTTTACCTG CGCACGCGTC GCAGCCATCT CCGCGCACAG TGGTGGCCAC CGCGACTGGT GCTGAAGTGT 000400 000401 CGGCGCGTGC CGGGCGCTCC GCTGGGACCG GGGTTGCTGG ccctgagtct gagctttctc atctgtacga ttgggacaag 000480 000481 tacagtaacc ctcgcccgtc aagacgggcc agggctgtcg cgagggtcCA CGCCTTAGAG CAGGCACCTA TCTTCTGCAG 000560 000561 GGCCCTGAGA TGGGGTCTGA CTCAGTTCCT GCGGGGAACT TCACCAGTAC CCAgtcagtg cccttcagtt aaagaccacc 000640 000641 aggagcacac ttgtaattac attgcagcaa ggaatggggt actatgggtc atctcagtgg gaggagttag agagaaacta 000720 000721 ttatacgatt tgggctttaa ttggttgatt tcggacagga tctcagaaag tgaagacttt agattggatg ctgtcagaaa 000800 000801 gcaggagcaa tatgattatt aagtattttG TGGGTGGCAT CAAGACCTTG TTttttatct gcacttagac aacattataa 000880 000881 agtgcccttg tttttgtttg cacttatcac ggtctcagat taaccttctg aagttgatat tctgtgagat tgtttatgtc 000960 000961 caacaggaaa acaaaatgtc ctggccatga gcatcagact agcgtgtaat aacattaagg cctGTGACCc aaatattgac 001040 001041 agaattgaag ttagaaatag ttctacagta atagagtctt caatactcca tttaaaataa tgcatagaag ctggacatgg 001120 001121 tggctcatgc ctttaatctc agctacctgg gaggctgcgg caggtggatt gcttgaggtc aggcgttcga gaccagcctg 001200 001201 gGCcttttgg cctgtctcgg cttttaacat accttcctca ctcagcttaa tcatttctca ctttagattt ataataagag 001280 001281 atgtgtgact cttactttca cttgaacaca gaggccttta tagagttatt aattggccta atttcaatat tgctgtgtct 001360 001361 cagaaaacag acctgaggag agggggagat ggaggaaggg cagatcgatg gaaccattcg aatacacata ggtatcaatt 001440 001441 aagctcattg tcttttggac catggcttgt gatgccccaa aacaatgaca atagtaatat caatgatcac tgataacaga 001520 001521 tcaccataac agatataata ataacaaaac atttgaaata ctacaagaat tacaaagatg taacacagag gtgcaaaata 001600 001601 agcacatgct accagaaaag tggcactggt agacttgctt ggtgcacggt tgctacaaac cttcaacctg taaaaactgc 001680 001681 aatatctgag aagcataata aagtgaagtg c |
Predicted Small Protein
| Name | NONHSAT131480_smProtein_986:1099 |
| Length | 38 |
| Molecular weight | 4154.7931 |
| Aromaticity | 0.0 |
| Instability index | 115.594594595 |
| Isoelectric point | 7.83624267578 |
| Runs | 8 |
| Runs residual | 0.03644929333 |
| Runs probability | 0.0187246069599 |
| Amino acid sequence | MSIRLACNNIKACDPNIDRIEVRNSSTVIESSILHLK |
| Secondary structure | LLEEHHHLLLLLLLLLLLLEEEELLLLEEEEEEEELL |
| PRMN | - |
| PiMo | - |