Difference between revisions of "NONHSAT134368"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ATGCACGCATTTGTAATGTGGACAGGAGACACGCACAGCAACTTGGGGTAGGGAAGAGAGTCTGGATGGGAGACATCAGACATCACTATGTCATGGAGAACCCCCTGCAACTGCATAAAGcaagcgcattgcagtcagtacccaactactgccaagtgaccacagcaaagctcgagggtttgggtggcatctggctagcacagagttgagcaagactatcacctcctcccatatataatctatgctcctgttaatgcaacctgagtgcatgttagcttttttgacgaccacaccacaacattcacactgagctgatgaccattagaaactcctaagattttctcATGTGCCTTCTCTGGTGCAGTAAAGTTTTGTCCCCGAGTGGAGTCCTTATTAAGTATCATCTATCCTTTTCGCCTATCTGGATTAATGCTTATTGAATATGTGGCTTAAGGGTCTGTGACTGCATGACCTTGTTAAGGCATGAAACATACAGATAAATAGTGTTGCTTAGAGGAGTTTCAGGGTGGTTCGTGCCAACTTGTCAGCATTGTTTTCTAATAACAAGGGACTAACAATTTGTACCTGGCCTTCGTGAGACCCCTGGAGGGAACTGCCACTGGCGCTGGTTTCGTAGCAAGAATATACCTCAAATGACCAAACAGGAATGAAAAACTTCAGATGGTTTAGGTGCCAGTGGCTTCCGAATAAAACAGCATTCTTGAAGTGAACAGCTGATGAGGACATGAAATATTATGCCAAAGCTGGCATCACACTGTTCTTTTTCCTGGATGAAAATCTCTCTGAGAAGCATTTGCTCTTAACTTTGGTGTCCTGGGGACTGCTGCCTTATCCCAGGAAGCCACCCAGAGTCTTGGATGTGTGGGATCCTTAGGACTTCATGGTAAACCTGCTCTAGTCCCTCGGGTTAGTAAAATGAAGCCCAGGACATCTGAGAGCCCCCAGCACTTCCATAGAAATGGACCAAAATCCCTTCTCCCAGGGGGAGAAACCTGGAATAAgctcaagaggacagacggctaaattttcaagaatcgtgtgagctgctgttaaacaagccattattaaaactttaattgtgtaaacttacaattaggtcagttatattaaaagtaaaagtgatacata</dnaseq>| | sequence = <dnaseq>ATGCACGCATTTGTAATGTGGACAGGAGACACGCACAGCAACTTGGGGTAGGGAAGAGAGTCTGGATGGGAGACATCAGACATCACTATGTCATGGAGAACCCCCTGCAACTGCATAAAGcaagcgcattgcagtcagtacccaactactgccaagtgaccacagcaaagctcgagggtttgggtggcatctggctagcacagagttgagcaagactatcacctcctcccatatataatctatgctcctgttaatgcaacctgagtgcatgttagcttttttgacgaccacaccacaacattcacactgagctgatgaccattagaaactcctaagattttctcATGTGCCTTCTCTGGTGCAGTAAAGTTTTGTCCCCGAGTGGAGTCCTTATTAAGTATCATCTATCCTTTTCGCCTATCTGGATTAATGCTTATTGAATATGTGGCTTAAGGGTCTGTGACTGCATGACCTTGTTAAGGCATGAAACATACAGATAAATAGTGTTGCTTAGAGGAGTTTCAGGGTGGTTCGTGCCAACTTGTCAGCATTGTTTTCTAATAACAAGGGACTAACAATTTGTACCTGGCCTTCGTGAGACCCCTGGAGGGAACTGCCACTGGCGCTGGTTTCGTAGCAAGAATATACCTCAAATGACCAAACAGGAATGAAAAACTTCAGATGGTTTAGGTGCCAGTGGCTTCCGAATAAAACAGCATTCTTGAAGTGAACAGCTGATGAGGACATGAAATATTATGCCAAAGCTGGCATCACACTGTTCTTTTTCCTGGATGAAAATCTCTCTGAGAAGCATTTGCTCTTAACTTTGGTGTCCTGGGGACTGCTGCCTTATCCCAGGAAGCCACCCAGAGTCTTGGATGTGTGGGATCCTTAGGACTTCATGGTAAACCTGCTCTAGTCCCTCGGGTTAGTAAAATGAAGCCCAGGACATCTGAGAGCCCCCAGCACTTCCATAGAAATGGACCAAAATCCCTTCTCCCAGGGGGAGAAACCTGGAATAAgctcaagaggacagacggctaaattttcaagaatcgtgtgagctgctgttaaacaagccattattaaaactttaattgtgtaaacttacaattaggtcagttatattaaaagtaaaagtgatacata</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG053257]] |
Revision as of 12:19, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT134368 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1149 nt |
| Genomic location |
chr9-:116906868..116914992 |
| Exon number |
3 |
| Exons |
116906868..116907335,116908781..116909341,116914873..116914992 |
| Genome context |
|
| Sequence |
000001 ATGCACGCAT TTGTAATGTG GACAGGAGAC ACGCACAGCA ACTTGGGGTA GGGAAGAGAG TCTGGATGGG AGACATCAGA 000080
000081 CATCACTATG TCATGGAGAA CCCCCTGCAA CTGCATAAAG caagcgcatt gcagtcagta cccaactact gccaagtgac 000160 000161 cacagcaaag ctcgagggtt tgggtggcat ctggctagca cagagttgag caagactatc acctcctccc atatataatc 000240 000241 tatgctcctg ttaatgcaac ctgagtgcat gttagctttt ttgacgacca caccacaaca ttcacactga gctgatgacc 000320 000321 attagaaact cctaagattt tctcATGTGC CTTCTCTGGT GCAGTAAAGT TTTGTCCCCG AGTGGAGTCC TTATTAAGTA 000400 000401 TCATCTATCC TTTTCGCCTA TCTGGATTAA TGCTTATTGA ATATGTGGCT TAAGGGTCTG TGACTGCATG ACCTTGTTAA 000480 000481 GGCATGAAAC ATACAGATAA ATAGTGTTGC TTAGAGGAGT TTCAGGGTGG TTCGTGCCAA CTTGTCAGCA TTGTTTTCTA 000560 000561 ATAACAAGGG ACTAACAATT TGTACCTGGC CTTCGTGAGA CCCCTGGAGG GAACTGCCAC TGGCGCTGGT TTCGTAGCAA 000640 000641 GAATATACCT CAAATGACCA AACAGGAATG AAAAACTTCA GATGGTTTAG GTGCCAGTGG CTTCCGAATA AAACAGCATT 000720 000721 CTTGAAGTGA ACAGCTGATG AGGACATGAA ATATTATGCC AAAGCTGGCA TCACACTGTT CTTTTTCCTG GATGAAAATC 000800 000801 TCTCTGAGAA GCATTTGCTC TTAACTTTGG TGTCCTGGGG ACTGCTGCCT TATCCCAGGA AGCCACCCAG AGTCTTGGAT 000880 000881 GTGTGGGATC CTTAGGACTT CATGGTAAAC CTGCTCTAGT CCCTCGGGTT AGTAAAATGA AGCCCAGGAC ATCTGAGAGC 000960 000961 CCCCAGCACT TCCATAGAAA TGGACCAAAA TCCCTTCTCC CAGGGGGAGA AACCTGGAAT AAgctcaaga ggacagacgg 001040 001041 ctaaattttc aagaatcgtg tgagctgctg ttaaacaagc cattattaaa actttaattg tgtaaactta caattaggtc 001120 001121 agttatatta aaagtaaaag tgatacata |
Predicted Small Protein
| Name | NONHSAT134368_smProtein_65:208 |
| Length | 48 |
| Molecular weight | 5206.9328 |
| Aromaticity | 0.063829787234 |
| Instability index | 60.9510638298 |
| Isoelectric point | 6.80718994141 |
| Runs | 9 |
| Runs residual | 0.0252127659574 |
| Runs probability | 0.0321988655322 |
| Amino acid sequence | MGDIRHHYVMENPLQLHKASALQSVPNYCQVTTAKLEGLGGIWLAQS |
| Secondary structure | LLLEEEEEELLLHHHHHHHHHHHLLLLHHHHHHHHHHLLLLEEEELL |
| PRMN | - |
| PiMo | - |
