Difference between revisions of "ENST00000475981.1"

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sequence = <dnaseq>AATCAACACAGTGGAGGCGAGAAGTCTGGCCTTGCGCCGGCCGGGGAGCTTTTCGCCAAGGCTCCTGTGGGATGGGATAGCTTGTTCTCTGGGCTGCAGGAACCAAAACATTAGACCACCCTTTCTGTGACCTTGGGCATGCCGCCCTCGGTTCCGAGCCGCAAGTCTTTCTTTCGGGGAAAATGAAAAGGGGTCAAGATTTGGACCAGATGACACCCAATGTCCCATTCAACGGTCGCATTCTGTCATCCACAGGAATTAGTCCTGTATCCGAAACATTCTCTGGTAGTCAAAAGCTGTGAGCAAATAATAAGAAAAAATGTGCAAAACGTTTTTTAGTACAGTTAGCAAATAGTGTACTCAGTTGTTGAAGGAAATGGGATGAAGCCTATCAGATTTCAACAAACTTATTTACCTCTTGAGAAAGCTGCTCTCTTTTCGGTTGTCCTTCTGTGTCTCTCTTTCAAAGATCAAGTCTCACTGCGATGCTGATATGTTTTTAACACTTCTCCAGCATTTCTTAACCTAACAGCAGGTTTCAGGCACAGGCCTGCAGCAAGCAGCCATATCCAACTAAAATTCCACTACTATATGTTTTTATTTGCATTACATTTATCAGGGAGCTTTCTATTTATGGCAAGGAAACTGATTTTAAATTTAAATCAGTGATATACATCAAGAGCTAGATTTTGCATTTTTAAGTGAAAAAGTAAGCTATCAAATAGAACAGGTGGAATTTGGATATGGTGGGGCGGAGGGGTAGGCAGAGCAGGGGAGAGGAACATCGTGATAGTGGTACTCAAATTACTAAGTTTTAGAAAACACTATCACGGGGCCTTTCAGGAGCCTGGAGACAGATGGAGGGGAAGACAGAAGAGAGATTAAGGAGAAGAATGGTTTCATTTGGAAGGACACTGACTAAGGAAAAACAGAGAAAAGGATGAAACCCAAGCCAACTCTGCAACTCTATTAAAAACACCAAGACTTCAATATGAACCTGGCATGGTGGGCACAGTCGGGCACTGCAGGCGGCTTGCCTCCAGCAGAAGGAATACTGCTACTCAGCTCTAGATGATTGCCCTGAAGAAATTCATGCCCACTGAATCTCCTTAAAGGGAGGCAGTGCATTCTTCATGGCTAGAGCTTCAGCAGCTATCTAGAACCATATGGTGGAAGCCACTTACTGAGAACTGTGAAACAAGAGCCTGGGTCCCTGACATATGAAGCCACCATACCTACCTTAAAGTGTCTTTCACTTGAGGGAAAAATACATCTTTCTTAGAGATTTGAATTTTAATGTCCCAGAAATATAAAGAAGATGGCATTAAAATGTCCTATATGTTGGCAGTCCTACCCTGAAGACTTTTTTTGCTTATCTTTTGTTCTGAGCTACAGTCTTCGCAGAGACTAAATTAGTGACTGGACAACAGAAGAAAATAGACCATCCTGGCTAAAATGGTGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCTGGGCATGTTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAAAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCATGGGGGATAGAGCGAGACTCCGTCTC</dnaseq>|
 
sequence = <dnaseq>AATCAACACAGTGGAGGCGAGAAGTCTGGCCTTGCGCCGGCCGGGGAGCTTTTCGCCAAGGCTCCTGTGGGATGGGATAGCTTGTTCTCTGGGCTGCAGGAACCAAAACATTAGACCACCCTTTCTGTGACCTTGGGCATGCCGCCCTCGGTTCCGAGCCGCAAGTCTTTCTTTCGGGGAAAATGAAAAGGGGTCAAGATTTGGACCAGATGACACCCAATGTCCCATTCAACGGTCGCATTCTGTCATCCACAGGAATTAGTCCTGTATCCGAAACATTCTCTGGTAGTCAAAAGCTGTGAGCAAATAATAAGAAAAAATGTGCAAAACGTTTTTTAGTACAGTTAGCAAATAGTGTACTCAGTTGTTGAAGGAAATGGGATGAAGCCTATCAGATTTCAACAAACTTATTTACCTCTTGAGAAAGCTGCTCTCTTTTCGGTTGTCCTTCTGTGTCTCTCTTTCAAAGATCAAGTCTCACTGCGATGCTGATATGTTTTTAACACTTCTCCAGCATTTCTTAACCTAACAGCAGGTTTCAGGCACAGGCCTGCAGCAAGCAGCCATATCCAACTAAAATTCCACTACTATATGTTTTTATTTGCATTACATTTATCAGGGAGCTTTCTATTTATGGCAAGGAAACTGATTTTAAATTTAAATCAGTGATATACATCAAGAGCTAGATTTTGCATTTTTAAGTGAAAAAGTAAGCTATCAAATAGAACAGGTGGAATTTGGATATGGTGGGGCGGAGGGGTAGGCAGAGCAGGGGAGAGGAACATCGTGATAGTGGTACTCAAATTACTAAGTTTTAGAAAACACTATCACGGGGCCTTTCAGGAGCCTGGAGACAGATGGAGGGGAAGACAGAAGAGAGATTAAGGAGAAGAATGGTTTCATTTGGAAGGACACTGACTAAGGAAAAACAGAGAAAAGGATGAAACCCAAGCCAACTCTGCAACTCTATTAAAAACACCAAGACTTCAATATGAACCTGGCATGGTGGGCACAGTCGGGCACTGCAGGCGGCTTGCCTCCAGCAGAAGGAATACTGCTACTCAGCTCTAGATGATTGCCCTGAAGAAATTCATGCCCACTGAATCTCCTTAAAGGGAGGCAGTGCATTCTTCATGGCTAGAGCTTCAGCAGCTATCTAGAACCATATGGTGGAAGCCACTTACTGAGAACTGTGAAACAAGAGCCTGGGTCCCTGACATATGAAGCCACCATACCTACCTTAAAGTGTCTTTCACTTGAGGGAAAAATACATCTTTCTTAGAGATTTGAATTTTAATGTCCCAGAAATATAAAGAAGATGGCATTAAAATGTCCTATATGTTGGCAGTCCTACCCTGAAGACTTTTTTTGCTTATCTTTTGTTCTGAGCTACAGTCTTCGCAGAGACTAAATTAGTGACTGGACAACAGAAGAAAATAGACCATCCTGGCTAAAATGGTGAAACCCCATCTCTACTAAAAACACAAAAAATTAGCTGGGCATGTTAGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAAAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCATGGGGGATAGAGCGAGACTCCGTCTC</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:lnc-LXN-1]]
+
[[Category:Intergenic]][[Category:lnc-LXN-1]][[Category:NONHSAG036505]]

Revision as of 12:25, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000475981.1

Source

Gencode19

Same with

lnc-LXN-1:1,NONHSAT092928

Classification

intergenic

Length

1640 nt

Genomic location

chr3-:158263009..158288855

Exon number

5

Exons

158263009..158263366,158271651..158271830,158279186..158279294,158285749..158285845,158287960..158288855

Genome context

Sequence
000001 AATCAACACA GTGGAGGCGA GAAGTCTGGC CTTGCGCCGG CCGGGGAGCT TTTCGCCAAG GCTCCTGTGG GATGGGATAG 000080
000081 CTTGTTCTCT GGGCTGCAGG AACCAAAACA TTAGACCACC CTTTCTGTGA CCTTGGGCAT GCCGCCCTCG GTTCCGAGCC 000160
000161 GCAAGTCTTT CTTTCGGGGA AAATGAAAAG GGGTCAAGAT TTGGACCAGA TGACACCCAA TGTCCCATTC AACGGTCGCA 000240
000241 TTCTGTCATC CACAGGAATT AGTCCTGTAT CCGAAACATT CTCTGGTAGT CAAAAGCTGT GAGCAAATAA TAAGAAAAAA 000320
000321 TGTGCAAAAC GTTTTTTAGT ACAGTTAGCA AATAGTGTAC TCAGTTGTTG AAGGAAATGG GATGAAGCCT ATCAGATTTC 000400
000401 AACAAACTTA TTTACCTCTT GAGAAAGCTG CTCTCTTTTC GGTTGTCCTT CTGTGTCTCT CTTTCAAAGA TCAAGTCTCA 000480
000481 CTGCGATGCT GATATGTTTT TAACACTTCT CCAGCATTTC TTAACCTAAC AGCAGGTTTC AGGCACAGGC CTGCAGCAAG 000560
000561 CAGCCATATC CAACTAAAAT TCCACTACTA TATGTTTTTA TTTGCATTAC ATTTATCAGG GAGCTTTCTA TTTATGGCAA 000640
000641 GGAAACTGAT TTTAAATTTA AATCAGTGAT ATACATCAAG AGCTAGATTT TGCATTTTTA AGTGAAAAAG TAAGCTATCA 000720
000721 AATAGAACAG GTGGAATTTG GATATGGTGG GGCGGAGGGG TAGGCAGAGC AGGGGAGAGG AACATCGTGA TAGTGGTACT 000800
000801 CAAATTACTA AGTTTTAGAA AACACTATCA CGGGGCCTTT CAGGAGCCTG GAGACAGATG GAGGGGAAGA CAGAAGAGAG 000880
000881 ATTAAGGAGA AGAATGGTTT CATTTGGAAG GACACTGACT AAGGAAAAAC AGAGAAAAGG ATGAAACCCA AGCCAACTCT 000960
000961 GCAACTCTAT TAAAAACACC AAGACTTCAA TATGAACCTG GCATGGTGGG CACAGTCGGG CACTGCAGGC GGCTTGCCTC 001040
001041 CAGCAGAAGG AATACTGCTA CTCAGCTCTA GATGATTGCC CTGAAGAAAT TCATGCCCAC TGAATCTCCT TAAAGGGAGG 001120
001121 CAGTGCATTC TTCATGGCTA GAGCTTCAGC AGCTATCTAG AACCATATGG TGGAAGCCAC TTACTGAGAA CTGTGAAACA 001200
001201 AGAGCCTGGG TCCCTGACAT ATGAAGCCAC CATACCTACC TTAAAGTGTC TTTCACTTGA GGGAAAAATA CATCTTTCTT 001280
001281 AGAGATTTGA ATTTTAATGT CCCAGAAATA TAAAGAAGAT GGCATTAAAA TGTCCTATAT GTTGGCAGTC CTACCCTGAA 001360
001361 GACTTTTTTT GCTTATCTTT TGTTCTGAGC TACAGTCTTC GCAGAGACTA AATTAGTGAC TGGACAACAG AAGAAAATAG 001440
001441 ACCATCCTGG CTAAAATGGT GAAACCCCAT CTCTACTAAA AACACAAAAA ATTAGCTGGG CATGTTAGCG GGTGCCTGTA 001520
001521 GTCCCAGCTA CTCGGGAGGC TGAGGCAAGA AAATGGCGTG AACCTGGGAG GCGGAGCTTG CAGTGAGCTG AGATCGCGCC 001600
001601 ACTGCACTCC AGCATGGGGG ATAGAGCGAG ACTCCGTCTC
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