Difference between revisions of "NONHSAT115517"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>cttgctctgttgccaagactggaatgcagaggcgcgatctccgctcattgcaggctccgcctccACTTGACTCAGGGAACACACAGCAGTGGGAGCCAAGGCTGTCAGCGATCGAGGACCACAGTATACCTGATGCCCTCCCTCCTGACCTGTGATTGGGATTGAGCTGAAGATAGTCACTGACATGATTCAAAGGATTAGCACTTGGTACAGGTTCCCTCTGTGTGCCGGGCAGTATGCCAGTTAATTCAAGTGCATGTCAGACCCAGAGGGTGACATCCTGTGACTCAGATGCTAGGGCCCTTATGATGCCTGGTAAGGATGAACCGTTGTCCACATTCTGTTTTCTGAGTCAAAGAGGAGGAAGATCTGTCCATCGAAACTGAGCTGCCAAGATCCACTGCCGTGTCCTTCGGCTTTCTGCTCACAAGACATCCTGGCCTGCAGGGTGAGGGGTTCTGCCCCCATCAAAGAGAGATCAGCTCTGGCCTTGACAGATATTGAGCCCCCATCCTCTTCCACTTGCAATTTCCTGGTCTTACTTGCTCTGCCACATCCTGGCCTTGCCTCTAGACGTCTTG</dnaseq>| | sequence = <dnaseq>cttgctctgttgccaagactggaatgcagaggcgcgatctccgctcattgcaggctccgcctccACTTGACTCAGGGAACACACAGCAGTGGGAGCCAAGGCTGTCAGCGATCGAGGACCACAGTATACCTGATGCCCTCCCTCCTGACCTGTGATTGGGATTGAGCTGAAGATAGTCACTGACATGATTCAAAGGATTAGCACTTGGTACAGGTTCCCTCTGTGTGCCGGGCAGTATGCCAGTTAATTCAAGTGCATGTCAGACCCAGAGGGTGACATCCTGTGACTCAGATGCTAGGGCCCTTATGATGCCTGGTAAGGATGAACCGTTGTCCACATTCTGTTTTCTGAGTCAAAGAGGAGGAAGATCTGTCCATCGAAACTGAGCTGCCAAGATCCACTGCCGTGTCCTTCGGCTTTCTGCTCACAAGACATCCTGGCCTGCAGGGTGAGGGGTTCTGCCCCCATCAAAGAGAGATCAGCTCTGGCCTTGACAGATATTGAGCCCCCATCCTCTTCCACTTGCAATTTCCTGGTCTTACTTGCTCTGCCACATCCTGGCCTTGCCTCTAGACGTCTTG</dnaseq>| | ||
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− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG045135]] |
Revision as of 12:32, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115517 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
581 nt |
Genomic location |
chr6+:150205468..150240583 |
Exon number |
4 |
Exons |
150205468..150205591,150206721..150206809,150217269..150217375,150240323..150240583 |
Genome context |
|
Sequence |
000001 cttgctctgt tgccaagact ggaatgcaga ggcgcgatct ccgctcattg caggctccgc ctccACTTGA CTCAGGGAAC 000080
000081 ACACAGCAGT GGGAGCCAAG GCTGTCAGCG ATCGAGGACC ACAGTATACC TGATGCCCTC CCTCCTGACC TGTGATTGGG 000160 000161 ATTGAGCTGA AGATAGTCAC TGACATGATT CAAAGGATTA GCACTTGGTA CAGGTTCCCT CTGTGTGCCG GGCAGTATGC 000240 000241 CAGTTAATTC AAGTGCATGT CAGACCCAGA GGGTGACATC CTGTGACTCA GATGCTAGGG CCCTTATGAT GCCTGGTAAG 000320 000321 GATGAACCGT TGTCCACATT CTGTTTTCTG AGTCAAAGAG GAGGAAGATC TGTCCATCGA AACTGAGCTG CCAAGATCCA 000400 000401 CTGCCGTGTC CTTCGGCTTT CTGCTCACAA GACATCCTGG CCTGCAGGGT GAGGGGTTCT GCCCCCATCA AAGAGAGATC 000480 000481 AGCTCTGGCC TTGACAGATA TTGAGCCCCC ATCCTCTTCC ACTTGCAATT TCCTGGTCTT ACTTGCTCTG CCACATCCTG 000560 000561 GCCTTGCCTC TAGACGTCTT G |
Predicted Small Protein
Name | NONHSAT115517_smProtein_236:385 |
Length | 50 |
Molecular weight | 5374.0405 |
Aromaticity | 0.0408163265306 |
Instability index | 74.593877551 |
Isoelectric point | 8.68206787109 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0360458497714 |
Amino acid sequence | MPVNSSACQTQRVTSCDSDARALMMPGKDEPLSTFCFLSQRGGRSVHRN |
Secondary structure | LLLLLLLLLLLEEEELLLLHHHHLLLLLLLLLLEEEEEELLLLEEEELL |
PRMN | - |
PiMo | - |