Difference between revisions of "NONHSAT115517"

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sequence = <dnaseq>cttgctctgttgccaagactggaatgcagaggcgcgatctccgctcattgcaggctccgcctccACTTGACTCAGGGAACACACAGCAGTGGGAGCCAAGGCTGTCAGCGATCGAGGACCACAGTATACCTGATGCCCTCCCTCCTGACCTGTGATTGGGATTGAGCTGAAGATAGTCACTGACATGATTCAAAGGATTAGCACTTGGTACAGGTTCCCTCTGTGTGCCGGGCAGTATGCCAGTTAATTCAAGTGCATGTCAGACCCAGAGGGTGACATCCTGTGACTCAGATGCTAGGGCCCTTATGATGCCTGGTAAGGATGAACCGTTGTCCACATTCTGTTTTCTGAGTCAAAGAGGAGGAAGATCTGTCCATCGAAACTGAGCTGCCAAGATCCACTGCCGTGTCCTTCGGCTTTCTGCTCACAAGACATCCTGGCCTGCAGGGTGAGGGGTTCTGCCCCCATCAAAGAGAGATCAGCTCTGGCCTTGACAGATATTGAGCCCCCATCCTCTTCCACTTGCAATTTCCTGGTCTTACTTGCTCTGCCACATCCTGGCCTTGCCTCTAGACGTCTTG</dnaseq>|
 
sequence = <dnaseq>cttgctctgttgccaagactggaatgcagaggcgcgatctccgctcattgcaggctccgcctccACTTGACTCAGGGAACACACAGCAGTGGGAGCCAAGGCTGTCAGCGATCGAGGACCACAGTATACCTGATGCCCTCCCTCCTGACCTGTGATTGGGATTGAGCTGAAGATAGTCACTGACATGATTCAAAGGATTAGCACTTGGTACAGGTTCCCTCTGTGTGCCGGGCAGTATGCCAGTTAATTCAAGTGCATGTCAGACCCAGAGGGTGACATCCTGTGACTCAGATGCTAGGGCCCTTATGATGCCTGGTAAGGATGAACCGTTGTCCACATTCTGTTTTCTGAGTCAAAGAGGAGGAAGATCTGTCCATCGAAACTGAGCTGCCAAGATCCACTGCCGTGTCCTTCGGCTTTCTGCTCACAAGACATCCTGGCCTGCAGGGTGAGGGGTTCTGCCCCCATCAAAGAGAGATCAGCTCTGGCCTTGACAGATATTGAGCCCCCATCCTCTTCCACTTGCAATTTCCTGGTCTTACTTGCTCTGCCACATCCTGGCCTTGCCTCTAGACGTCTTG</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:NONHSAG045135]]

Revision as of 12:32, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT115517

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

581 nt

Genomic location

chr6+:150205468..150240583

Exon number

4

Exons

150205468..150205591,150206721..150206809,150217269..150217375,150240323..150240583

Genome context

Sequence
000001 cttgctctgt tgccaagact ggaatgcaga ggcgcgatct ccgctcattg caggctccgc ctccACTTGA CTCAGGGAAC 000080
000081 ACACAGCAGT GGGAGCCAAG GCTGTCAGCG ATCGAGGACC ACAGTATACC TGATGCCCTC CCTCCTGACC TGTGATTGGG 000160
000161 ATTGAGCTGA AGATAGTCAC TGACATGATT CAAAGGATTA GCACTTGGTA CAGGTTCCCT CTGTGTGCCG GGCAGTATGC 000240
000241 CAGTTAATTC AAGTGCATGT CAGACCCAGA GGGTGACATC CTGTGACTCA GATGCTAGGG CCCTTATGAT GCCTGGTAAG 000320
000321 GATGAACCGT TGTCCACATT CTGTTTTCTG AGTCAAAGAG GAGGAAGATC TGTCCATCGA AACTGAGCTG CCAAGATCCA 000400
000401 CTGCCGTGTC CTTCGGCTTT CTGCTCACAA GACATCCTGG CCTGCAGGGT GAGGGGTTCT GCCCCCATCA AAGAGAGATC 000480
000481 AGCTCTGGCC TTGACAGATA TTGAGCCCCC ATCCTCTTCC ACTTGCAATT TCCTGGTCTT ACTTGCTCTG CCACATCCTG 000560
000561 GCCTTGCCTC TAGACGTCTT G
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Predicted Small Protein

Name NONHSAT115517_smProtein_236:385
Length 50
Molecular weight 5374.0405
Aromaticity 0.0408163265306
Instability index 74.593877551
Isoelectric point 8.68206787109
Runs 9
Runs residual 0.0216216216216
Runs probability 0.0360458497714
Amino acid sequence MPVNSSACQTQRVTSCDSDARALMMPGKDEPLSTFCFLSQRGGRSVHRN
Secondary structure LLLLLLLLLLLEEEELLLLHHHHLLLLLLLLLLEEEEEELLLLEEEELL
PRMN -
PiMo -