Difference between revisions of "NONHSAT040565"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AACTTGGTCCAGTTCAATCAAGCCATCAACAGCCAGGTGGCTTTAGTGGCCACTATGCATATTACCCCATGCCTAAAGGTTCTGGTACAAGAGCTTCTCTATAAGTTGCACATTGCCATAGTGGAAGACGGCATGGGAGATTTGGTGGCAAACACTTACGGTGCAATAATAGCTGTTTTTCCTATATCATGACAATATGTGGCACACTTCTAGACTCATTTCATGCCAAAGAAGTTCCTCAGAAGGGTAAGGAAATGGAGAATCTTACATGGTCCAATGCAGTCCCCAAGAAGTAATTTTGAATGGACAGTTACACTGGTTACTACAATGCTGTCTCTGACCTTCTCAGGATCGAAGATAATCATGAGTATCAAGGTGGAGATGGGTCTAGGCGAGAGAAAAGGAAGTAGTGGTTCTTGAGAAGAATTGTATGGCCAAGATAAGCTTGAACTATCTCTCCTCTTCCAGTTCCTGCAACTTCTTATTGCCTGATTGAGGTCATTACCCTATGGTGGTAATGACATCAGCAATGTAATAAATTCTCTCGTGGCTTTGTATCTGGTTTATAACATGGGAAATGTTTCCTCAAGAGTGGTGATGCCAGTATGGCTTCTGCTCTCTGGTGGTGTTGGAATCTGCATTAGTCTGTGGGTTTGGAGGAGAGTGATTCAGGCCATGGGGAAGAATCTGACACTGTAACACCCTCTCGTGCCTTCGGTACTGGACTGGCTCCTGCCCCCTCACTATGGTGATTGCATCAAATATCGGCCTCCCCATCAGTACAACACGTTGTAACATGGGCTCCTTTGTACCTGGCTTTAATCCAAGAAAGTTGTTGACTTGACTCTTTCGTGATATTGTATAGCCTGGTTTGTCACAGTCTTTATTTCTGGAATTGTCAGTGCTGCCATCTTGGCTGTCTTCAAGTATGTCATCCTC</dnaseq>| | sequence = <dnaseq>AACTTGGTCCAGTTCAATCAAGCCATCAACAGCCAGGTGGCTTTAGTGGCCACTATGCATATTACCCCATGCCTAAAGGTTCTGGTACAAGAGCTTCTCTATAAGTTGCACATTGCCATAGTGGAAGACGGCATGGGAGATTTGGTGGCAAACACTTACGGTGCAATAATAGCTGTTTTTCCTATATCATGACAATATGTGGCACACTTCTAGACTCATTTCATGCCAAAGAAGTTCCTCAGAAGGGTAAGGAAATGGAGAATCTTACATGGTCCAATGCAGTCCCCAAGAAGTAATTTTGAATGGACAGTTACACTGGTTACTACAATGCTGTCTCTGACCTTCTCAGGATCGAAGATAATCATGAGTATCAAGGTGGAGATGGGTCTAGGCGAGAGAAAAGGAAGTAGTGGTTCTTGAGAAGAATTGTATGGCCAAGATAAGCTTGAACTATCTCTCCTCTTCCAGTTCCTGCAACTTCTTATTGCCTGATTGAGGTCATTACCCTATGGTGGTAATGACATCAGCAATGTAATAAATTCTCTCGTGGCTTTGTATCTGGTTTATAACATGGGAAATGTTTCCTCAAGAGTGGTGATGCCAGTATGGCTTCTGCTCTCTGGTGGTGTTGGAATCTGCATTAGTCTGTGGGTTTGGAGGAGAGTGATTCAGGCCATGGGGAAGAATCTGACACTGTAACACCCTCTCGTGCCTTCGGTACTGGACTGGCTCCTGCCCCCTCACTATGGTGATTGCATCAAATATCGGCCTCCCCATCAGTACAACACGTTGTAACATGGGCTCCTTTGTACCTGGCTTTAATCCAAGAAAGTTGTTGACTTGACTCTTTCGTGATATTGTATAGCCTGGTTTGTCACAGTCTTTATTTCTGGAATTGTCAGTGCTGCCATCTTGGCTGTCTTCAAGTATGTCATCCTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG016193]] |
Revision as of 12:37, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT040565 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
939 nt |
| Genomic location |
chr15-:20172667..20173605 |
| Exon number |
1 |
| Exons |
20172667..20173605 |
| Genome context |
|
| Sequence |
000001 AACTTGGTCC AGTTCAATCA AGCCATCAAC AGCCAGGTGG CTTTAGTGGC CACTATGCAT ATTACCCCAT GCCTAAAGGT 000080
000081 TCTGGTACAA GAGCTTCTCT ATAAGTTGCA CATTGCCATA GTGGAAGACG GCATGGGAGA TTTGGTGGCA AACACTTACG 000160 000161 GTGCAATAAT AGCTGTTTTT CCTATATCAT GACAATATGT GGCACACTTC TAGACTCATT TCATGCCAAA GAAGTTCCTC 000240 000241 AGAAGGGTAA GGAAATGGAG AATCTTACAT GGTCCAATGC AGTCCCCAAG AAGTAATTTT GAATGGACAG TTACACTGGT 000320 000321 TACTACAATG CTGTCTCTGA CCTTCTCAGG ATCGAAGATA ATCATGAGTA TCAAGGTGGA GATGGGTCTA GGCGAGAGAA 000400 000401 AAGGAAGTAG TGGTTCTTGA GAAGAATTGT ATGGCCAAGA TAAGCTTGAA CTATCTCTCC TCTTCCAGTT CCTGCAACTT 000480 000481 CTTATTGCCT GATTGAGGTC ATTACCCTAT GGTGGTAATG ACATCAGCAA TGTAATAAAT TCTCTCGTGG CTTTGTATCT 000560 000561 GGTTTATAAC ATGGGAAATG TTTCCTCAAG AGTGGTGATG CCAGTATGGC TTCTGCTCTC TGGTGGTGTT GGAATCTGCA 000640 000641 TTAGTCTGTG GGTTTGGAGG AGAGTGATTC AGGCCATGGG GAAGAATCTG ACACTGTAAC ACCCTCTCGT GCCTTCGGTA 000720 000721 CTGGACTGGC TCCTGCCCCC TCACTATGGT GATTGCATCA AATATCGGCC TCCCCATCAG TACAACACGT TGTAACATGG 000800 000801 GCTCCTTTGT ACCTGGCTTT AATCCAAGAA AGTTGTTGAC TTGACTCTTT CGTGATATTG TATAGCCTGG TTTGTCACAG 000880 000881 TCTTTATTTC TGGAATTGTC AGTGCTGCCA TCTTGGCTGT CTTCAAGTAT GTCATCCTC |
Predicted Small Protein
| Name | NONHSAT040565_smProtein_302:409 |
| Length | 36 |
| Molecular weight | 4124.3795 |
| Aromaticity | 0.114285714286 |
| Instability index | 69.7342857143 |
| Isoelectric point | 5.58734130859 |
| Runs | 6 |
| Runs residual | 0.00968523002421 |
| Runs probability | 0.0323558852971 |
| Amino acid sequence | MDSYTGYYNAVSDLLRIEDNHEYQGGDGSRREKRK |
| Secondary structure | LLLLLEEHHHHHHHHLHHHLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
