Difference between revisions of "NONHSAT136188"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTTCCCGGAAGTGGTTCTTCTCCCTCTCCACCCTTTCGCCCGCCTGGGCGGTCCAGCTGCCCCTAGGGGCCAACTCCAGCGGCTATTTTGGGGCTGGACATCCCGCAGCTTTTCAAGGCGTGCCTTTGGTTTTTTTaagaagtgctatctaaaggaaaagctggactatgactctggggaactttcatatcctcagttgaccttaggctgtgtgaccttgagcaggtagcataacctctctgagtttcccgcgtgccttatgtgcagattgagATGCTAAAATGAGAGAGCTAAATTGGAAAGCTTTTTCCACATAGGGGGCCGTGAGCAGGTGGCTGTTTTGTCCTCTGGCACCTTTGGCTCAGACTTAAGCAGCTTCAACGACCGCCAAGATGCCTGCCATGCCCACCAAGATTTAAAGGACTCTGATAATTCTTTCTCTCCCCAAACGGTGTTTTCCTTATCTAATCCTAATAACCAAGCCTGGAGGAATCCCTGACTTCGTGATTGAAGGCTCTCCAGGTCCCCTAGTTTAAGGGCAGAGATTTACTTTCTCTGAGGCTACAAAGGAGCGTCTGCGAGAATGTCTCTACCTTAGACAAAACAGGGAGGAGGGGTGGAGCTCTCCAAATTGCCTCTGGTTTGGGCTTTTTCTTTCTGTTTTGGTGTATCGTCTCTGGCCAACAACACCTGTGAGTCCTTGATGTGACGATTAGGGAAGATGTTTTTAATTCACATAACTATTCTTTAGAGAAAATTGATCCTGAAACACCTTATTGCCTTATCGTAGAATGACTGCATTACTCAGAATTCTTTACCTCTACCGGAATTTAGTGAAGGGAAGGCACAACGTACATTAGGAAAATACAGGACACACTCCAGTCCTTAAACCTTCCACAATCTTCTAGCTCTTTAAGGTCGAGTGTGATCCTCCCCAGAACTGCATCTTCCAGGAAGCTCATGAGAAAGGAAGGATCCCAGGTCCCATCTCTGATCTGAGTCGGCATCTGCGTTTTAACAGAATCCTGAAGCAGTGGTCTAACTCCTTTGGTGGtgttattgtttgcatgtatacctccaaaattcacatattgaaatactaacccccaaggtgatagtattaggaggtggggcctttgggaggtaattaagtcatgagggtgaagccctcatgaatgggattagtactcttagaaaagggaccccagagaggtctctttccaccatgtaaggataaaagtacacggagaagatggcaatctgcaaactggaaaagggccctcctcagaacctgaccatcttggcaccttgatctcagacttccatcttccagaactgtgagaaataaatttcttttataaacactcagtcaatgctactttattatagcagcctgaatggattaagacaGGTGGTCTGGTTTAAAGTGATGTGGTGGCATCAGAAGTTTAAGGAGAGACTGGATTTACAGAACCAGAATCTGGGATGCTGTTTACAGAGCAAGTTATTTCCTGCATTTGGACACTGTCAGCAGGTCGATTCAGGAGACAGGTGAAAACTTTATCACCGGGCAGCCTGGATGAACACCACAACTTTGATATCTTTCACTTAAAGGAAAGATAAGGGCATCCACTATTTCTACACCTGGCTGGCAGAGTGAGAGCTCACCAAAGGTAAGTCTCTTTGGAGCAGCAAAATGCTCCATAATTTAACTCTTAAAATTTTAAATTTATTTCCTCCTTACTCCCTTCAATCCCGTATCATATCTCCATGTAACTAGTTAAAAGTTCAGCTCTCAgctgggtgaggtggcatgtgcctg</dnaseq>| | sequence = <dnaseq>TTTCCCGGAAGTGGTTCTTCTCCCTCTCCACCCTTTCGCCCGCCTGGGCGGTCCAGCTGCCCCTAGGGGCCAACTCCAGCGGCTATTTTGGGGCTGGACATCCCGCAGCTTTTCAAGGCGTGCCTTTGGTTTTTTTaagaagtgctatctaaaggaaaagctggactatgactctggggaactttcatatcctcagttgaccttaggctgtgtgaccttgagcaggtagcataacctctctgagtttcccgcgtgccttatgtgcagattgagATGCTAAAATGAGAGAGCTAAATTGGAAAGCTTTTTCCACATAGGGGGCCGTGAGCAGGTGGCTGTTTTGTCCTCTGGCACCTTTGGCTCAGACTTAAGCAGCTTCAACGACCGCCAAGATGCCTGCCATGCCCACCAAGATTTAAAGGACTCTGATAATTCTTTCTCTCCCCAAACGGTGTTTTCCTTATCTAATCCTAATAACCAAGCCTGGAGGAATCCCTGACTTCGTGATTGAAGGCTCTCCAGGTCCCCTAGTTTAAGGGCAGAGATTTACTTTCTCTGAGGCTACAAAGGAGCGTCTGCGAGAATGTCTCTACCTTAGACAAAACAGGGAGGAGGGGTGGAGCTCTCCAAATTGCCTCTGGTTTGGGCTTTTTCTTTCTGTTTTGGTGTATCGTCTCTGGCCAACAACACCTGTGAGTCCTTGATGTGACGATTAGGGAAGATGTTTTTAATTCACATAACTATTCTTTAGAGAAAATTGATCCTGAAACACCTTATTGCCTTATCGTAGAATGACTGCATTACTCAGAATTCTTTACCTCTACCGGAATTTAGTGAAGGGAAGGCACAACGTACATTAGGAAAATACAGGACACACTCCAGTCCTTAAACCTTCCACAATCTTCTAGCTCTTTAAGGTCGAGTGTGATCCTCCCCAGAACTGCATCTTCCAGGAAGCTCATGAGAAAGGAAGGATCCCAGGTCCCATCTCTGATCTGAGTCGGCATCTGCGTTTTAACAGAATCCTGAAGCAGTGGTCTAACTCCTTTGGTGGtgttattgtttgcatgtatacctccaaaattcacatattgaaatactaacccccaaggtgatagtattaggaggtggggcctttgggaggtaattaagtcatgagggtgaagccctcatgaatgggattagtactcttagaaaagggaccccagagaggtctctttccaccatgtaaggataaaagtacacggagaagatggcaatctgcaaactggaaaagggccctcctcagaacctgaccatcttggcaccttgatctcagacttccatcttccagaactgtgagaaataaatttcttttataaacactcagtcaatgctactttattatagcagcctgaatggattaagacaGGTGGTCTGGTTTAAAGTGATGTGGTGGCATCAGAAGTTTAAGGAGAGACTGGATTTACAGAACCAGAATCTGGGATGCTGTTTACAGAGCAAGTTATTTCCTGCATTTGGACACTGTCAGCAGGTCGATTCAGGAGACAGGTGAAAACTTTATCACCGGGCAGCCTGGATGAACACCACAACTTTGATATCTTTCACTTAAAGGAAAGATAAGGGCATCCACTATTTCTACACCTGGCTGGCAGAGTGAGAGCTCACCAAAGGTAAGTCTCTTTGGAGCAGCAAAATGCTCCATAATTTAACTCTTAAAATTTTAAATTTATTTCCTCCTTACTCCCTTCAATCCCGTATCATATCTCCATGTAACTAGTTAAAAGTTCAGCTCTCAgctgggtgaggtggcatgtgcctg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG053984]] |
Revision as of 12:51, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT136188 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1822 nt |
| Genomic location |
chrX+:7895782..7897603 |
| Exon number |
1 |
| Exons |
7895782..7897603 |
| Genome context |
|
| Sequence |
000001 TTTCCCGGAA GTGGTTCTTC TCCCTCTCCA CCCTTTCGCC CGCCTGGGCG GTCCAGCTGC CCCTAGGGGC CAACTCCAGC 000080
000081 GGCTATTTTG GGGCTGGACA TCCCGCAGCT TTTCAAGGCG TGCCTTTGGT TTTTTTaaga agtgctatct aaaggaaaag 000160 000161 ctggactatg actctgggga actttcatat cctcagttga ccttaggctg tgtgaccttg agcaggtagc ataacctctc 000240 000241 tgagtttccc gcgtgcctta tgtgcagatt gagATGCTAA AATGAGAGAG CTAAATTGGA AAGCTTTTTC CACATAGGGG 000320 000321 GCCGTGAGCA GGTGGCTGTT TTGTCCTCTG GCACCTTTGG CTCAGACTTA AGCAGCTTCA ACGACCGCCA AGATGCCTGC 000400 000401 CATGCCCACC AAGATTTAAA GGACTCTGAT AATTCTTTCT CTCCCCAAAC GGTGTTTTCC TTATCTAATC CTAATAACCA 000480 000481 AGCCTGGAGG AATCCCTGAC TTCGTGATTG AAGGCTCTCC AGGTCCCCTA GTTTAAGGGC AGAGATTTAC TTTCTCTGAG 000560 000561 GCTACAAAGG AGCGTCTGCG AGAATGTCTC TACCTTAGAC AAAACAGGGA GGAGGGGTGG AGCTCTCCAA ATTGCCTCTG 000640 000641 GTTTGGGCTT TTTCTTTCTG TTTTGGTGTA TCGTCTCTGG CCAACAACAC CTGTGAGTCC TTGATGTGAC GATTAGGGAA 000720 000721 GATGTTTTTA ATTCACATAA CTATTCTTTA GAGAAAATTG ATCCTGAAAC ACCTTATTGC CTTATCGTAG AATGACTGCA 000800 000801 TTACTCAGAA TTCTTTACCT CTACCGGAAT TTAGTGAAGG GAAGGCACAA CGTACATTAG GAAAATACAG GACACACTCC 000880 000881 AGTCCTTAAA CCTTCCACAA TCTTCTAGCT CTTTAAGGTC GAGTGTGATC CTCCCCAGAA CTGCATCTTC CAGGAAGCTC 000960 000961 ATGAGAAAGG AAGGATCCCA GGTCCCATCT CTGATCTGAG TCGGCATCTG CGTTTTAACA GAATCCTGAA GCAGTGGTCT 001040 001041 AACTCCTTTG GTGGtgttat tgtttgcatg tatacctcca aaattcacat attgaaatac taacccccaa ggtgatagta 001120 001121 ttaggaggtg gggcctttgg gaggtaatta agtcatgagg gtgaagccct catgaatggg attagtactc ttagaaaagg 001200 001201 gaccccagag aggtctcttt ccaccatgta aggataaaag tacacggaga agatggcaat ctgcaaactg gaaaagggcc 001280 001281 ctcctcagaa cctgaccatc ttggcacctt gatctcagac ttccatcttc cagaactgtg agaaataaat ttcttttata 001360 001361 aacactcagt caatgctact ttattatagc agcctgaatg gattaagaca GGTGGTCTGG TTTAAAGTGA TGTGGTGGCA 001440 001441 TCAGAAGTTT AAGGAGAGAC TGGATTTACA GAACCAGAAT CTGGGATGCT GTTTACAGAG CAAGTTATTT CCTGCATTTG 001520 001521 GACACTGTCA GCAGGTCGAT TCAGGAGACA GGTGAAAACT TTATCACCGG GCAGCCTGGA TGAACACCAC AACTTTGATA 001600 001601 TCTTTCACTT AAAGGAAAGA TAAGGGCATC CACTATTTCT ACACCTGGCT GGCAGAGTGA GAGCTCACCA AAGGTAAGTC 001680 001681 TCTTTGGAGC AGCAAAATGC TCCATAATTT AACTCTTAAA ATTTTAAATT TATTTCCTCC TTACTCCCTT CAATCCCGTA 001760 001761 TCATATCTCC ATGTAACTAG TTAAAAGTTC AGCTCTCAgc tgggtgaggt ggcatgtgcc tg |
Predicted Small Protein
| Name | NONHSAT136188_smProtein_1175:1294 |
| Length | 40 |
| Molecular weight | 4595.4079 |
| Aromaticity | 0.0769230769231 |
| Instability index | 82.0615384615 |
| Isoelectric point | 11.7235717773 |
| Runs | 5 |
| Runs residual | 0.0405354449472 |
| Runs probability | 0.0129305776365 |
| Amino acid sequence | MGLVLLEKGPQRGLFPPCKDKSTRRRWQSANWKRALLRT |
| Secondary structure | LLEEEELLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
