Difference between revisions of "NONHSAT071227"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTTGGCTGAGCTCGTGGCGCTGTTGGCCTATGCGCCTGGGCTCGCTTGTGTGACCCCCTGGGGCTCACCCAAGTTTCAGCTGGTCGGAGGACAGCAAACCCAAGAACAAGGAGCACTGATACTAAGTTACGGATGTAAAATAAAACACTGGGAAGCAAACAGTCTTATAAAGAGGATTTTATAACATCAGCCCTCTTGGAACAGAGATCATGATGACACGGCATCTACTCGTTCAGGAGGAACCCCAGGCCCTTCCAGCGGTGGCCACACGTCACACAGTGGGGACAACAGCAGTGAGCAAGGTGATGGCTTGGACAACAGTGTAGCTTCCCCCAGCACAGGTGACGATGATGACCCTGATAAGGACAAAAAGCGTCACAAAAAGCGTGGCATCTTTCCCAAAGTAGCCACAAATATCATGAGGGCGTGGCTGTTCCAGCATCTAACACACCCTTACCCTTCTGAAGAACAGAAAAAGCAGTTGGCACAAGACACGGGACTCACCATCCTTCAAGTGAACAATTGGTTTATTAATGCCCGGAGAAGAATAGTGCAGCCCATGATAGACCAGTC</dnaseq>| | sequence = <dnaseq>TTTGGCTGAGCTCGTGGCGCTGTTGGCCTATGCGCCTGGGCTCGCTTGTGTGACCCCCTGGGGCTCACCCAAGTTTCAGCTGGTCGGAGGACAGCAAACCCAAGAACAAGGAGCACTGATACTAAGTTACGGATGTAAAATAAAACACTGGGAAGCAAACAGTCTTATAAAGAGGATTTTATAACATCAGCCCTCTTGGAACAGAGATCATGATGACACGGCATCTACTCGTTCAGGAGGAACCCCAGGCCCTTCCAGCGGTGGCCACACGTCACACAGTGGGGACAACAGCAGTGAGCAAGGTGATGGCTTGGACAACAGTGTAGCTTCCCCCAGCACAGGTGACGATGATGACCCTGATAAGGACAAAAAGCGTCACAAAAAGCGTGGCATCTTTCCCAAAGTAGCCACAAATATCATGAGGGCGTGGCTGTTCCAGCATCTAACACACCCTTACCCTTCTGAAGAACAGAAAAAGCAGTTGGCACAAGACACGGGACTCACCATCCTTCAAGTGAACAATTGGTTTATTAATGCCCGGAGAAGAATAGTGCAGCCCATGATAGACCAGTC</dnaseq>| | ||
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| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG028020]] |
Revision as of 12:52, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT071227 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
573 nt |
| Genomic location |
chr2+:66672325..66794632 |
| Exon number |
6 |
| Exons |
66672325..66672428,66681841..66681926,66691241..66691352,66739281..66739426,66775075..66775151,66794585..66794632 |
| Genome context |
|
| Sequence |
000001 TTTGGCTGAG CTCGTGGCGC TGTTGGCCTA TGCGCCTGGG CTCGCTTGTG TGACCCCCTG GGGCTCACCC AAGTTTCAGC 000080
000081 TGGTCGGAGG ACAGCAAACC CAAGAACAAG GAGCACTGAT ACTAAGTTAC GGATGTAAAA TAAAACACTG GGAAGCAAAC 000160 000161 AGTCTTATAA AGAGGATTTT ATAACATCAG CCCTCTTGGA ACAGAGATCA TGATGACACG GCATCTACTC GTTCAGGAGG 000240 000241 AACCCCAGGC CCTTCCAGCG GTGGCCACAC GTCACACAGT GGGGACAACA GCAGTGAGCA AGGTGATGGC TTGGACAACA 000320 000321 GTGTAGCTTC CCCCAGCACA GGTGACGATG ATGACCCTGA TAAGGACAAA AAGCGTCACA AAAAGCGTGG CATCTTTCCC 000400 000401 AAAGTAGCCA CAAATATCAT GAGGGCGTGG CTGTTCCAGC ATCTAACACA CCCTTACCCT TCTGAAGAAC AGAAAAAGCA 000480 000481 GTTGGCACAA GACACGGGAC TCACCATCCT TCAAGTGAAC AATTGGTTTA TTAATGCCCG GAGAAGAATA GTGCAGCCCA 000560 000561 TGATAGACCA GTC |
Predicted Small Protein
| Name | NONHSAT071227_smProtein_209:325 |
| Length | 39 |
| Molecular weight | 4162.8565 |
| Aromaticity | 0.0263157894737 |
| Instability index | 42.8842105263 |
| Isoelectric point | 8.53668212891 |
| Runs | 7 |
| Runs residual | 0.0115997229917 |
| Runs probability | 0.0440608675902 |
| Amino acid sequence | MMTRHLLVQEEPQALPAVATRHTVGTTAVSKVMAWTTV |
| Secondary structure | LLEEEELLLLLLLLLHHHHLLLLLLEEEEEEEEEEEEL |
| PRMN | - |
| PiMo | - |
