Difference between revisions of "NONHSAT094131"
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sequence = <dnaseq>atcagatgccaggtatgtggaatatatctaatccttgtaacaaacttgaattggaggtcattgtccaattttacaaataaacagtctccaagatattaagcagattttccaaggccaatttgtaaatgccacagctagtgttcaaagccaagactttctggctccaactcccatgcactttccactacacAGGTGCATCTCAGCCCAGGCTATGTTCACAATACtcaccatcaccatcaccatcatcatTAACTCCAGCCCAGGCTATGGTCACAATACtcaccatcaccgtcatcaacatcattaactccagcccaggctatggtcacaatactcaccatcaccgtcatcttcatcattaactccagcccaggctatgttcacaatactcaccatcaccgtcatcatcattaACTCCAGCCCAGgctatgttcacaatactcaccatcaccgtcatcatcattaactccagcccaggctatgttcacagtactcaccatcaccgtcatcatcatcattaactccagcccaggctatgttcacagtactcaccatcaccgtcatcttcatcatGAACTCCAGCCCAGGCTATGTTCACAGTACTCACCATCACCGTCATCATCATCATTAACTCCAGCCCAGGCTATGTTCACAGaactcaccatcaccatcactgtcatcatcatcattaactccagcccaggctatgttcacagtactcaccatcaccgtcatcttcatcattaactccagcccaggctatggtcacaatactcaacatcaccgtcatcaacatcattaactccagcccaggctatggtcacaatactcaccatcaccgtcatcttcatcattaactccagcccaggCTATGTTCACAATACTCACCATCACCGTCATCATTAACTCCAGCCCAGGCTATGTTCACAGTACtcaccatcaccatcactgtcaccatcatcatTAACTCCAGCCCAGGCTATGGTCACAATACtcaccatcaccgtcaccttcatcattaactccagcccaggctatgttcacaatactcaccatcaccgtcatcatcatgaactccagcccaggctatgttcacagaactcaccatcaccgtcatcatcatcattaACTCCAGCCCAGGCTATGTTCACAGAACtcaccatcaccatcactgtcatcatcatcatTAACTCCAGCCCAGGCTATGTTCACAGTACTCACCATCACCGTCATCTTCATCATTAACTCCAGCCCAGGCTATGTTCACAGAACTCACCATCACCGTCATCATCATCATTAACTCCAGCCCAGGCTATGTTCACAGTACtcaccatcaccatcaccgtcaccatcatcatTAACTCCAGCCCAGGCTATGTTCACAGTACtcaccatc</dnaseq>| | sequence = <dnaseq>atcagatgccaggtatgtggaatatatctaatccttgtaacaaacttgaattggaggtcattgtccaattttacaaataaacagtctccaagatattaagcagattttccaaggccaatttgtaaatgccacagctagtgttcaaagccaagactttctggctccaactcccatgcactttccactacacAGGTGCATCTCAGCCCAGGCTATGTTCACAATACtcaccatcaccatcaccatcatcatTAACTCCAGCCCAGGCTATGGTCACAATACtcaccatcaccgtcatcaacatcattaactccagcccaggctatggtcacaatactcaccatcaccgtcatcttcatcattaactccagcccaggctatgttcacaatactcaccatcaccgtcatcatcattaACTCCAGCCCAGgctatgttcacaatactcaccatcaccgtcatcatcattaactccagcccaggctatgttcacagtactcaccatcaccgtcatcatcatcattaactccagcccaggctatgttcacagtactcaccatcaccgtcatcttcatcatGAACTCCAGCCCAGGCTATGTTCACAGTACTCACCATCACCGTCATCATCATCATTAACTCCAGCCCAGGCTATGTTCACAGaactcaccatcaccatcactgtcatcatcatcattaactccagcccaggctatgttcacagtactcaccatcaccgtcatcttcatcattaactccagcccaggctatggtcacaatactcaacatcaccgtcatcaacatcattaactccagcccaggctatggtcacaatactcaccatcaccgtcatcttcatcattaactccagcccaggCTATGTTCACAATACTCACCATCACCGTCATCATTAACTCCAGCCCAGGCTATGTTCACAGTACtcaccatcaccatcactgtcaccatcatcatTAACTCCAGCCCAGGCTATGGTCACAATACtcaccatcaccgtcaccttcatcattaactccagcccaggctatgttcacaatactcaccatcaccgtcatcatcatgaactccagcccaggctatgttcacagaactcaccatcaccgtcatcatcatcattaACTCCAGCCCAGGCTATGTTCACAGAACtcaccatcaccatcactgtcatcatcatcatTAACTCCAGCCCAGGCTATGTTCACAGTACTCACCATCACCGTCATCTTCATCATTAACTCCAGCCCAGGCTATGTTCACAGAACTCACCATCACCGTCATCATCATCATTAACTCCAGCCCAGGCTATGTTCACAGTACtcaccatcaccatcaccgtcaccatcatcatTAACTCCAGCCCAGGCTATGTTCACAGTACtcaccatc</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG037044]] | + | [[Category:Intergenic]][[Category:NONHSAG037044]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:49, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094131 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1396 nt |
Genomic location |
chr3-:194566123..194567634 |
Exon number |
2 |
Exons |
194566123..194567093,194567210..194567634 |
Genome context |
|
Sequence |
000001 atcagatgcc aggtatgtgg aatatatcta atccttgtaa caaacttgaa ttggaggtca ttgtccaatt ttacaaataa 000080
000081 acagtctcca agatattaag cagattttcc aaggccaatt tgtaaatgcc acagctagtg ttcaaagcca agactttctg 000160 000161 gctccaactc ccatgcactt tccactacac AGGTGCATCT CAGCCCAGGC TATGTTCACA ATACtcacca tcaccatcac 000240 000241 catcatcatT AACTCCAGCC CAGGCTATGG TCACAATACt caccatcacc gtcatcaaca tcattaactc cagcccaggc 000320 000321 tatggtcaca atactcacca tcaccgtcat cttcatcatt aactccagcc caggctatgt tcacaatact caccatcacc 000400 000401 gtcatcatca ttaACTCCAG CCCAGgctat gttcacaata ctcaccatca ccgtcatcat cattaactcc agcccaggct 000480 000481 atgttcacag tactcaccat caccgtcatc atcatcatta actccagccc aggctatgtt cacagtactc accatcaccg 000560 000561 tcatcttcat catGAACTCC AGCCCAGGCT ATGTTCACAG TACTCACCAT CACCGTCATC ATCATCATTA ACTCCAGCCC 000640 000641 AGGCTATGTT CACAGaactc accatcacca tcactgtcat catcatcatt aactccagcc caggctatgt tcacagtact 000720 000721 caccatcacc gtcatcttca tcattaactc cagcccaggc tatggtcaca atactcaaca tcaccgtcat caacatcatt 000800 000801 aactccagcc caggctatgg tcacaatact caccatcacc gtcatcttca tcattaactc cagcccaggC TATGTTCACA 000880 000881 ATACTCACCA TCACCGTCAT CATTAACTCC AGCCCAGGCT ATGTTCACAG TACtcaccat caccatcact gtcaccatca 000960 000961 tcatTAACTC CAGCCCAGGC TATGGTCACA ATACtcacca tcaccgtcac cttcatcatt aactccagcc caggctatgt 001040 001041 tcacaatact caccatcacc gtcatcatca tgaactccag cccaggctat gttcacagaa ctcaccatca ccgtcatcat 001120 001121 catcattaAC TCCAGCCCAG GCTATGTTCA CAGAACtcac catcaccatc actgtcatca tcatcatTAA CTCCAGCCCA 001200 001201 GGCTATGTTC ACAGTACTCA CCATCACCGT CATCTTCATC ATTAACTCCA GCCCAGGCTA TGTTCACAGA ACTCACCATC 001280 001281 ACCGTCATCA TCATCATTAA CTCCAGCCCA GGCTATGTTC ACAGTACtca ccatcaccat caccgtcacc atcatcatTA 001360 001361 ACTCCAGCCC AGGCTATGTT CACAGTACtc accatc |
Predicted Small Protein
Name | NONHSAT094131_smProtein_125:361 |
Length | 79 |
Molecular weight | 8732.9264 |
Aromaticity | 0.0897435897436 |
Instability index | 85.1 |
Isoelectric point | 9.59173583984 |
Runs | 10 |
Runs residual | 0.00547217010632 |
Runs probability | 0.0481363716658 |
Amino acid sequence | MPQLVFKAKTFWLQLPCTFHYTGASQPRLCSQYSPSPSPSSLTPAQAMVTILTITVINII NSSPGYGHNTHHHRHLHH |
Secondary structure | LLLEEEEEEEEEEELLLEEEELLLLLLLEEELLLLLLLLLLLLHHHHHHEEEEEEEEEEE ELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |