Difference between revisions of "NONHSAT021426"
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>CCCGTGGGCTTCTCTCTGTGGAAAATGGTGGAGGCTGCTTCTGCCCCAGGAGGGAGAAACACCGACTCCCTGGCTTTGGCGCCAGAAGCCTGGATCGGCTGCCAGGTGACTTCTATTTCTATCTGGTTCTCGTCTGGGGGGGCCCTGGCCGGGCAGCCCCCCAACACTTCTCCTGCCCTGAAACACGGCTCTAGCCAACCTGCTCCGCTGCTTCACCTGCGACCGTCTCTGCGGGGGCTGCACGGCGCCAGCCCCTCCAGCCCACCAGGGCATTGTCCTCCAGCCCGTCATGCCCAGCTGTGACCCCGGTCCGGGCCCTGCCTGCCTCCCCACCAAGACTTTCCGCAGCTATCTGCCCCGCTGTCACCGCACTTACAGCTGTGTCCACTGCCGTGCACACCTGGCCAAACACGATGAGCTTATTTCCAAGTCCTTCCAAGGGAGCCATGGCCGAGCCTACCTGTTTAACTCCGTGTGAGTCTACCTCTTTCCTTGTGCGTGTGCTTGTGCTTGTGTGTGAGTGAGTAATTTTCCTCTGTGGAGAAAGGGGGGAATCCATCAGGTGATCTTGTGCCTTCAGTCTTTGCCTCCCCTTTTGCAAAGAGGGTCTCAATCTGAAGTTCTCACATGGGGAGCCGGGGGAGAATTGAAATCATAACGGTGGAAAAAGAAGGCCCAGGCTCTAGTCTTAAAGGGGTGGATTATCAAAGGCAGGGGCTGTCCAGTTCTCTCCAGATGGAAGTTCCCTTGGGCTGTCTGGGGACTGGACTGACAGTGCAACCCCACTGGGTGCTGGGTCCTTCCTGTTTCCTGAGACAGGGTCAACGTGGGTTGCGGGCCAGCTGAACAGCGCCTCTTGCTCACGGGGCTCCACTCGGTAGCTGACATTTTCTGTGAGAGCTGCAAAACCACACTGGGCTGGAAATATGAGCAAGCTTTTGAGACGAGCCAGAAGTACAAGGAAGGGAAATACATCATTGAAATGTCACACATGGTGAAGGACAACGGCTGGGACTGAGGGGCTCAGGCAGGGTGTGCCCTTCCTCCGCATGCCCCTCCCTCCCCACGGCCCTGCCAAGCAGTCTATACCAGCATGAGTACTGCCCCACCCCTGGGGGAAACCTGGCTCCAACCAACCCCTCCCCTGCCTCCACCATATCCACTACCAGGCACCCTTTAGAACAGGGGTCTGGGGGTACCCCAGGGGTGTTAAGGCTCAGGAGTGGGCAGCAGTCAGGGAGAGACAGAACTGGGGGAAAGGGATGGTTGTGGGTCTTTCTGTTCCCAAGATCCTGAACATGGAAGCGATGGCAGGGCATAGACTCAGGCAGAGAGGATTGTGGGAGGAATCCGTTTTTGCTCCACCTCTTTTTGAGTGAACAGAGGACAAACCTTGGGTCACAGGGCAAGTAGATCATGGACCACAGAACAGCAGATGAGAAAAGACTTGGGTTGGAGTGAAATTCTGGTCTCAGACACCAGGAGACCAGAGTCTCTGAGGATGAAGTTTCCTACCCCTATTTGTAGGGAAAAGGACTTGAGTGCAGGGAAAACTCAAATCCCAGGCCCTGGGAAATAGTAAAATAATCAAAGGGTTTTCCATTTCACTCCACTTGTTAGTTTATCTTGGCACTGAAGAGGCACTTTCGAGTATCTAACTTTTGCCATTGGGTGGGGTGGGGACAGCTGCTCGCGGAACAGCCCCTAGTCGGCTGCTTCCAGAGTAAGCAGTCTTTATGGGCTTTCTCTGAGGCCCAGTCACTGCTCCTGGGACCCAGTCCCCTGGAGGGGAGGTGGAAAATCAGTGCTACGGGGCCAGTCTTTCCCGTGGCTGCCACCAGCGAATGAAACTTTTGTATGATACATAAAGTGCTTGAGTCTATTTTTAATAAAAAGGGAAAAAGCAACTTGA</dnaseq>| | sequence = <dnaseq>CCCGTGGGCTTCTCTCTGTGGAAAATGGTGGAGGCTGCTTCTGCCCCAGGAGGGAGAAACACCGACTCCCTGGCTTTGGCGCCAGAAGCCTGGATCGGCTGCCAGGTGACTTCTATTTCTATCTGGTTCTCGTCTGGGGGGGCCCTGGCCGGGCAGCCCCCCAACACTTCTCCTGCCCTGAAACACGGCTCTAGCCAACCTGCTCCGCTGCTTCACCTGCGACCGTCTCTGCGGGGGCTGCACGGCGCCAGCCCCTCCAGCCCACCAGGGCATTGTCCTCCAGCCCGTCATGCCCAGCTGTGACCCCGGTCCGGGCCCTGCCTGCCTCCCCACCAAGACTTTCCGCAGCTATCTGCCCCGCTGTCACCGCACTTACAGCTGTGTCCACTGCCGTGCACACCTGGCCAAACACGATGAGCTTATTTCCAAGTCCTTCCAAGGGAGCCATGGCCGAGCCTACCTGTTTAACTCCGTGTGAGTCTACCTCTTTCCTTGTGCGTGTGCTTGTGCTTGTGTGTGAGTGAGTAATTTTCCTCTGTGGAGAAAGGGGGGAATCCATCAGGTGATCTTGTGCCTTCAGTCTTTGCCTCCCCTTTTGCAAAGAGGGTCTCAATCTGAAGTTCTCACATGGGGAGCCGGGGGAGAATTGAAATCATAACGGTGGAAAAAGAAGGCCCAGGCTCTAGTCTTAAAGGGGTGGATTATCAAAGGCAGGGGCTGTCCAGTTCTCTCCAGATGGAAGTTCCCTTGGGCTGTCTGGGGACTGGACTGACAGTGCAACCCCACTGGGTGCTGGGTCCTTCCTGTTTCCTGAGACAGGGTCAACGTGGGTTGCGGGCCAGCTGAACAGCGCCTCTTGCTCACGGGGCTCCACTCGGTAGCTGACATTTTCTGTGAGAGCTGCAAAACCACACTGGGCTGGAAATATGAGCAAGCTTTTGAGACGAGCCAGAAGTACAAGGAAGGGAAATACATCATTGAAATGTCACACATGGTGAAGGACAACGGCTGGGACTGAGGGGCTCAGGCAGGGTGTGCCCTTCCTCCGCATGCCCCTCCCTCCCCACGGCCCTGCCAAGCAGTCTATACCAGCATGAGTACTGCCCCACCCCTGGGGGAAACCTGGCTCCAACCAACCCCTCCCCTGCCTCCACCATATCCACTACCAGGCACCCTTTAGAACAGGGGTCTGGGGGTACCCCAGGGGTGTTAAGGCTCAGGAGTGGGCAGCAGTCAGGGAGAGACAGAACTGGGGGAAAGGGATGGTTGTGGGTCTTTCTGTTCCCAAGATCCTGAACATGGAAGCGATGGCAGGGCATAGACTCAGGCAGAGAGGATTGTGGGAGGAATCCGTTTTTGCTCCACCTCTTTTTGAGTGAACAGAGGACAAACCTTGGGTCACAGGGCAAGTAGATCATGGACCACAGAACAGCAGATGAGAAAAGACTTGGGTTGGAGTGAAATTCTGGTCTCAGACACCAGGAGACCAGAGTCTCTGAGGATGAAGTTTCCTACCCCTATTTGTAGGGAAAAGGACTTGAGTGCAGGGAAAACTCAAATCCCAGGCCCTGGGAAATAGTAAAATAATCAAAGGGTTTTCCATTTCACTCCACTTGTTAGTTTATCTTGGCACTGAAGAGGCACTTTCGAGTATCTAACTTTTGCCATTGGGTGGGGTGGGGACAGCTGCTCGCGGAACAGCCCCTAGTCGGCTGCTTCCAGAGTAAGCAGTCTTTATGGGCTTTCTCTGAGGCCCAGTCACTGCTCCTGGGACCCAGTCCCCTGGAGGGGAGGTGGAAAATCAGTGCTACGGGGCCAGTCTTTCCCGTGGCTGCCACCAGCGAATGAAACTTTTGTATGATACATAAAGTGCTTGAGTCTATTTTTAATAAAAAGGGAAAAAGCAACTTGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG008359]] | + | [[Category:Sense]][[Category:NONHSAG008359]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:33, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT021426 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1912 nt |
Genomic location |
chr11-:57412560..57415050 |
Exon number |
4 |
Exons |
57412560..57413543,57413770..57414267,57414440..57414764,57414946..57415050 |
Genome context |
|
Sequence |
000001 CCCGTGGGCT TCTCTCTGTG GAAAATGGTG GAGGCTGCTT CTGCCCCAGG AGGGAGAAAC ACCGACTCCC TGGCTTTGGC 000080
000081 GCCAGAAGCC TGGATCGGCT GCCAGGTGAC TTCTATTTCT ATCTGGTTCT CGTCTGGGGG GGCCCTGGCC GGGCAGCCCC 000160 000161 CCAACACTTC TCCTGCCCTG AAACACGGCT CTAGCCAACC TGCTCCGCTG CTTCACCTGC GACCGTCTCT GCGGGGGCTG 000240 000241 CACGGCGCCA GCCCCTCCAG CCCACCAGGG CATTGTCCTC CAGCCCGTCA TGCCCAGCTG TGACCCCGGT CCGGGCCCTG 000320 000321 CCTGCCTCCC CACCAAGACT TTCCGCAGCT ATCTGCCCCG CTGTCACCGC ACTTACAGCT GTGTCCACTG CCGTGCACAC 000400 000401 CTGGCCAAAC ACGATGAGCT TATTTCCAAG TCCTTCCAAG GGAGCCATGG CCGAGCCTAC CTGTTTAACT CCGTGTGAGT 000480 000481 CTACCTCTTT CCTTGTGCGT GTGCTTGTGC TTGTGTGTGA GTGAGTAATT TTCCTCTGTG GAGAAAGGGG GGAATCCATC 000560 000561 AGGTGATCTT GTGCCTTCAG TCTTTGCCTC CCCTTTTGCA AAGAGGGTCT CAATCTGAAG TTCTCACATG GGGAGCCGGG 000640 000641 GGAGAATTGA AATCATAACG GTGGAAAAAG AAGGCCCAGG CTCTAGTCTT AAAGGGGTGG ATTATCAAAG GCAGGGGCTG 000720 000721 TCCAGTTCTC TCCAGATGGA AGTTCCCTTG GGCTGTCTGG GGACTGGACT GACAGTGCAA CCCCACTGGG TGCTGGGTCC 000800 000801 TTCCTGTTTC CTGAGACAGG GTCAACGTGG GTTGCGGGCC AGCTGAACAG CGCCTCTTGC TCACGGGGCT CCACTCGGTA 000880 000881 GCTGACATTT TCTGTGAGAG CTGCAAAACC ACACTGGGCT GGAAATATGA GCAAGCTTTT GAGACGAGCC AGAAGTACAA 000960 000961 GGAAGGGAAA TACATCATTG AAATGTCACA CATGGTGAAG GACAACGGCT GGGACTGAGG GGCTCAGGCA GGGTGTGCCC 001040 001041 TTCCTCCGCA TGCCCCTCCC TCCCCACGGC CCTGCCAAGC AGTCTATACC AGCATGAGTA CTGCCCCACC CCTGGGGGAA 001120 001121 ACCTGGCTCC AACCAACCCC TCCCCTGCCT CCACCATATC CACTACCAGG CACCCTTTAG AACAGGGGTC TGGGGGTACC 001200 001201 CCAGGGGTGT TAAGGCTCAG GAGTGGGCAG CAGTCAGGGA GAGACAGAAC TGGGGGAAAG GGATGGTTGT GGGTCTTTCT 001280 001281 GTTCCCAAGA TCCTGAACAT GGAAGCGATG GCAGGGCATA GACTCAGGCA GAGAGGATTG TGGGAGGAAT CCGTTTTTGC 001360 001361 TCCACCTCTT TTTGAGTGAA CAGAGGACAA ACCTTGGGTC ACAGGGCAAG TAGATCATGG ACCACAGAAC AGCAGATGAG 001440 001441 AAAAGACTTG GGTTGGAGTG AAATTCTGGT CTCAGACACC AGGAGACCAG AGTCTCTGAG GATGAAGTTT CCTACCCCTA 001520 001521 TTTGTAGGGA AAAGGACTTG AGTGCAGGGA AAACTCAAAT CCCAGGCCCT GGGAAATAGT AAAATAATCA AAGGGTTTTC 001600 001601 CATTTCACTC CACTTGTTAG TTTATCTTGG CACTGAAGAG GCACTTTCGA GTATCTAACT TTTGCCATTG GGTGGGGTGG 001680 001681 GGACAGCTGC TCGCGGAACA GCCCCTAGTC GGCTGCTTCC AGAGTAAGCA GTCTTTATGG GCTTTCTCTG AGGCCCAGTC 001760 001761 ACTGCTCCTG GGACCCAGTC CCCTGGAGGG GAGGTGGAAA ATCAGTGCTA CGGGGCCAGT CTTTCCCGTG GCTGCCACCA 001840 001841 GCGAATGAAA CTTTTGTATG ATACATAAAG TGCTTGAGTC TATTTTTAAT AAAAAGGGAA AAAGCAACTT GA |
Predicted Small Protein
Name | NONHSAT021426_smProtein_1262:1378 |
Length | 39 |
Molecular weight | 4310.0747 |
Aromaticity | 0.0789473684211 |
Instability index | 56.5710526316 |
Isoelectric point | 6.54669189453 |
Runs | 7 |
Runs residual | 0.0115997229917 |
Runs probability | 0.0176142529084 |
Amino acid sequence | MVVGLSVPKILNMEAMAGHRLRQRGLWEESVFAPPLFE |
Secondary structure | LEEELLLHHHHHHHHHHHHHHHHLLLLLLEEELLLLLL |
PRMN | - |
PiMo | - |