Difference between revisions of "Lnc-SLC10A5-1:1"

Latest revision as of 05:17, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	lnc-SLC10A5-1:1
Source	LNCipedia2.1
Same with	NONHSAT127466
Classification	intergenic
Length	2135 nt
Genomic location	chr8-:82608603..82610929
Exon number	2
Exons	82608603..82609137,82609330..82610929
Genome context
Sequence	000001 CTTTCGTAAG CAATGACGCC AGCCACTTAG TCCATTGCAA AATAACTGAT GGTCCTGGAT ATTTAATCAT GTTAATGCAG 000080 000081 TCTGTTTCTT AACTAAAGAA AAATGGGTGC CCTTTAAAGT TTTTTTTTTT TTTTAAAGAT TAGGAAACAG GAAGTCAGAA 000160 000161 GAAGCAAAAT TAGACCTCCT AAGGTAGATG CCTAATGATT TACCATCAAA ATTCAAAATT TTCCTTGTTT TATGAGAGGA 000240 000241 ATGAGCAGGA GCATTGTCTT AGTGGAGAAG CAATCTCTGG TGAAGCTTAC CTGGGCATTT TTCTGCTAAA ACTTTGGCTG 000320 000321 TCTCTAAACA TTCTCATATT TTTTTTTTCT TTTTGTAGAG ATAGGTCTTG CTATGTTGCC CAGACTGGTC TTGAACTCCT 000400 000401 GGCCTCAATG GATCCTCCTG CCTTGGCCAC CAAAAGTGCT GAGACTACAG GCATAAGCCA CTGTACCCAG CCTCATAACA 000480 000481 CCTTTATAAT AAGCAGACGT TATTGTTCTT TGGCTCTCCA GAAAGTCAAC AAGAAAAATG CTTTGAGCAT CCCAAAAAAT 000560 000561 AGTTGCCATG ACCTTGCTTT TGACTAGTCC ACTTTTATTT TGACTGGACC ACTTCCACCT CTTGGTAGCT ATTGCTCTGT 000640 000641 TTGTGCTTTG TTTTCGGGAT TATTCTGGTA AAGCCATGTT TCATCTCCTG TTACAATTCT TGGAAGAAAT CCTTCAGGAT 000720 000721 CTTGATCCCA CTTGTTTAAA ATTTTTATTG AAAGACAACT GAAATTTTAA GTAGAAAACC CACCAGGAGA ACAAAAGTAC 000800 000801 TCTTGTCTGT AGCTGATCTG GGTGCAATAG TTTCGGTACC CATCAAGTGG AAAGTTTGCT CAAGTTTAAT TTTTCTGTCA 000880 000881 GCATTGTGTA AGCTGAACCA ACTGAGACAT CTATGATGTT GGATATTGTA TTAGTCCATT CTCACACTGC TATAAAGAAC 000960 000961 TACATGAGGT CGGGCGTGGT GGCTCACACC TGTAATCCCA GCACTTTGGG AGGCCAAGAC AGGTGGATCA CCTGAGATCA 001040 001041 GGAGTTCGAG ACAAACCTGG CCAACATGGT GAAACCCCAT ATCTACTAAA AATACAAAAA TTTGCTGGGC ATGATGACAA 001120 001121 ACACCTGTAA TCCCTGCTAC TCACAAGGCT GAGGCAGGAG AATCACTTGA ACCTGGGAGG CGGAGCTTGC AGTGAACCGA 001200 001201 GAGAGCACCA CTGCATTCCA GTCTGGGTGA CAAGAGTGAA ACTCTGTCCT CCCAAAAAAG AATTACCTGA GAGTGCGTAC 001280 001281 TGTATAAAGA AAAGAAGCTT GACTCAGTTC CACAGGCTCT ACAGGAAGCA TGGCTGGGAG GCTCAGGAAA CTTAAAATCA 001360 001361 TGGGAGAAGG GGAAGAAAGC ACATCTTCAC ATGGCCAGCA GGAGACAGCA AGTGAAGAGG GAGGTGCTAC ACACTTTCAA 001440 001441 ACAACCAGAT CTTGTGAGAA CTCTATCATG GGACAGCACT AGGGCGATGG TGCTAAACCA TCAGAAGCCA TGCACATGAT 001520 001521 CCAATCATCT CCCTCCATGT CCCTCCTCCA ACACTTCCTG TCATTACACT TCTGCATGAG ATTTGGGTGG GGACACACAG 001600 001601 CCAAACCTCA CCATAAATTT GATGTGTGTT CTTCCTTCAA TTTTAGCAGA ATTTATGTTT CTCTGATAAA AGAGCTCTTT 001680 001681 TCTAAATGTC TTATCATAGT TAGTGTCCCT CACTAGATCC TGTTCAGACA TGTTACAAAA AGTTTATTCT GGTGCAAAAA 001760 001761 AAAAATTGAA ATTCATACAC ACTTTTTTAT AATACATATT TTCCATGAAA ATTTAGAAGA ACACTTATAT AGATGAATGA 001840 001841 TAGATTATCA AAGTTTTCCT AGATTTGTCA GGCTTTGTTC TTCACGGTTT TCAAATGAAA GGGCCTGGAG AAACCGAAGA 001920 001921 ACTAAAAGGG TTGCAGAAAG AGTCCTAAGG GGAAAGAAAA ACTGATATAC TCACATCTTC GACCTAGGCA ACAAAAGTTA 002000 002001 TGA

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>CTTTCGTAAGCAATGACGCCAGCCACTTAGTCCATTGCAAAATAACTGATGGTCCTGGATATTTAATCATGTTAATGCAGTCTGTTTCTTAACTAAAGAAAAATGGGTGCCCTTTAAAGTTTTTTTTTTTTTTTAAAGATTAGGAAACAGGAAGTCAGAAGAAGCAAAATTAGACCTCCTAAGGTAGATGCCTAATGATTTACCATCAAAATTCAAAATTTTCCTTGTTTTATGAGAGGAATGAGCAGGAGCATTGTCTTAGTGGAGAAGCAATCTCTGGTGAAGCTTACCTGGGCATTTTTCTGCTAAAACTTTGGCTGTCTCTAAACATTCTCATATTTTTTTTTTCTTTTTGTAGAGATAGGTCTTGCTATGTTGCCCAGACTGGTCTTGAACTCCTGGCCTCAATGGATCCTCCTGCCTTGGCCACCAAAAGTGCTGAGACTACAGGCATAAGCCACTGTACCCAGCCTCATAACACCTTTATAATAAGCAGACGTTATTGTTCTTTGGCTCTCCAGAAAGTCAACAAGAAAAATGCTTTGAGCATCCCAAAAAATAGTTGCCATGACCTTGCTTTTGACTAGTCCACTTTTATTTTGACTGGACCACTTCCACCTCTTGGTAGCTATTGCTCTGTTTGTGCTTTGTTTTCGGGATTATTCTGGTAAAGCCATGTTTCATCTCCTGTTACAATTCTTGGAAGAAATCCTTCAGGATCTTGATCCCACTTGTTTAAAATTTTTATTGAAAGACAACTGAAATTTTAAGTAGAAAACCCACCAGGAGAACAAAAGTACTCTTGTCTGTAGCTGATCTGGGTGCAATAGTTTCGGTACCCATCAAGTGGAAAGTTTGCTCAAGTTTAATTTTTCTGTCAGCATTGTGTAAGCTGAACCAACTGAGACATCTATGATGTTGGATATTGTATTAGTCCATTCTCACACTGCTATAAAGAACTACATGAGGTCGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGACAGGTGGATCACCTGAGATCAGGAGTTCGAGACAAACCTGGCCAACATGGTGAAACCCCATATCTACTAAAAATACAAAAATTTGCTGGGCATGATGACAAACACCTGTAATCCCTGCTACTCACAAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGCTTGCAGTGAACCGAGAGAGCACCACTGCATTCCAGTCTGGGTGACAAGAGTGAAACTCTGTCCTCCCAAAAAAGAATTACCTGAGAGTGCGTACTGTATAAAGAAAAGAAGCTTGACTCAGTTCCACAGGCTCTACAGGAAGCATGGCTGGGAGGCTCAGGAAACTTAAAATCATGGGAGAAGGGGAAGAAAGCACATCTTCACATGGCCAGCAGGAGACAGCAAGTGAAGAGGGAGGTGCTACACACTTTCAAACAACCAGATCTTGTGAGAACTCTATCATGGGACAGCACTAGGGCGATGGTGCTAAACCATCAGAAGCCATGCACATGATCCAATCATCTCCCTCCATGTCCCTCCTCCAACACTTCCTGTCATTACACTTCTGCATGAGATTTGGGTGGGGACACACAGCCAAACCTCACCATAAATTTGATGTGTGTTCTTCCTTCAATTTTAGCAGAATTTATGTTTCTCTGATAAAAGAGCTCTTTTCTAAATGTCTTATCATAGTTAGTGTCCCTCACTAGATCCTGTTCAGACATGTTACAAAAAGTTTATTCTGGTGCAAAAAAAAAATTGAAATTCATACACACTTTTTTATAATACATATTTTCCATGAAAATTTAGAAGAACACTTATATAGATGAATGATAGATTATCAAAGTTTTCCTAGATTTGTCAGGCTTTGTTCTTCACGGTTTTCAAATGAAAGGGCCTGGAGAAACCGAAGAACTAAAAGGGTTGCAGAAAGAGTCCTAAGGGGAAAGAAAAACTGATATACTCACATCTTCGACCTAGGCAACAAAAGTTATGAGTCAAGATATTTGGTCACATAACTAAAGATAACTTAGGTTTTATGACATTTTTGTTTTTTGTTTTGTTTTTGTCAGTTAAAATAGGGAAATTTTAACTGAAATATCAATGAACAGTCCCATTCCCTATCCTC</dnaseq>|
 }}
-[[Category:Intergenic]][[Category:lnc-SLC10A5-1]][[Category:NONHSAG050628]]
+[[Category:Intergenic]][[Category:lnc-SLC10A5-1]][[Category:NONHSAG050628]][[Category:Transcripts]]