Difference between revisions of "NONHSAT138105"

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sequence = <dnaseq>GCCTGAGAGTGGCAGCAAAGTCCTGGGGGGCCCTTGCAACTTCTATTGGCACAGCTGGCTTAGTTGCTCAGACCCTACCTGCCTTGGTTCAGCAGCGGGTCAATGCTGTCAGGAAACTTCAGGCAGCATATGCACAAGTAGAAGCTCAAGTCTATAAAGGTCTTTACGGTCTTGAAAAAAATGTGCTTCCTTTTATCAACCTCTGTTTGATAAAAGATCTGAGATTATCAGTGTAATGTATGAGCCCGTAGAAAGTGAATGTCAGTGGGAAGTAGGTGGTCAGGAAGGAAGGAGCTTGGGAGGAAATGGAAAGAGCATGAAAACAAAGGACAAATAGATGGAATACCTCGCTTTAGGTTGACAGCTTTTAAAAATGTAAGGATTTTTGGTAGGATGATCCCAGAAAATGATGAACTTGTACTAGAGCACTTGAAAGATGTGAAAATAAATCTTTCAGGGGTTGAGAAACCAATGAGCTTCACCACAAAATTTAAGTTATAGAAATATTTTTCAGTGAAGTGAAGTTCTGACAAAAACATGTCAAATATTATCAGACCCAGATGATTCCGATCTCTTCTCTCAAGGGCCAGGAACAATCAGCAGCACAGGGTGTGAGATCTGTTGGAAAGAGGGGAAAAATATTATGGTGAAAAATATCAAGAAGCAAAAATGTGAGGGTCCTGGAAGTGTTGTACTTACCAGTAGGAACATTCTCAGCTATTCTTTTTCCCCTACATATTTCTATTCCCCAGGTTCTGCTGAGCATAGAGTATGGGATACGGCTACTGAGGATAAACTGGAATACCTTTTCCAAGAACGTCTCCCAATATCTGAATTATTCTTCTCTAAAGAAGCGGCTGAATATAAGTATGAAAATTCTGATGAGGAGGCTCAAGAAG</dnaseq>|
 
sequence = <dnaseq>GCCTGAGAGTGGCAGCAAAGTCCTGGGGGGCCCTTGCAACTTCTATTGGCACAGCTGGCTTAGTTGCTCAGACCCTACCTGCCTTGGTTCAGCAGCGGGTCAATGCTGTCAGGAAACTTCAGGCAGCATATGCACAAGTAGAAGCTCAAGTCTATAAAGGTCTTTACGGTCTTGAAAAAAATGTGCTTCCTTTTATCAACCTCTGTTTGATAAAAGATCTGAGATTATCAGTGTAATGTATGAGCCCGTAGAAAGTGAATGTCAGTGGGAAGTAGGTGGTCAGGAAGGAAGGAGCTTGGGAGGAAATGGAAAGAGCATGAAAACAAAGGACAAATAGATGGAATACCTCGCTTTAGGTTGACAGCTTTTAAAAATGTAAGGATTTTTGGTAGGATGATCCCAGAAAATGATGAACTTGTACTAGAGCACTTGAAAGATGTGAAAATAAATCTTTCAGGGGTTGAGAAACCAATGAGCTTCACCACAAAATTTAAGTTATAGAAATATTTTTCAGTGAAGTGAAGTTCTGACAAAAACATGTCAAATATTATCAGACCCAGATGATTCCGATCTCTTCTCTCAAGGGCCAGGAACAATCAGCAGCACAGGGTGTGAGATCTGTTGGAAAGAGGGGAAAAATATTATGGTGAAAAATATCAAGAAGCAAAAATGTGAGGGTCCTGGAAGTGTTGTACTTACCAGTAGGAACATTCTCAGCTATTCTTTTTCCCCTACATATTTCTATTCCCCAGGTTCTGCTGAGCATAGAGTATGGGATACGGCTACTGAGGATAAACTGGAATACCTTTTCCAAGAACGTCTCCCAATATCTGAATTATTCTTCTCTAAAGAAGCGGCTGAATATAAGTATGAAAATTCTGATGAGGAGGCTCAAGAAG</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG055063]]
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[[Category:Intergenic]][[Category:NONHSAG055063]][[Category:Transcripts]]

Latest revision as of 02:48, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT138105

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

899 nt

Genomic location

chrX-:105709772..105710670

Exon number

1

Exons

105709772..105710670

Genome context

Sequence
000001 GCCTGAGAGT GGCAGCAAAG TCCTGGGGGG CCCTTGCAAC TTCTATTGGC ACAGCTGGCT TAGTTGCTCA GACCCTACCT 000080
000081 GCCTTGGTTC AGCAGCGGGT CAATGCTGTC AGGAAACTTC AGGCAGCATA TGCACAAGTA GAAGCTCAAG TCTATAAAGG 000160
000161 TCTTTACGGT CTTGAAAAAA ATGTGCTTCC TTTTATCAAC CTCTGTTTGA TAAAAGATCT GAGATTATCA GTGTAATGTA 000240
000241 TGAGCCCGTA GAAAGTGAAT GTCAGTGGGA AGTAGGTGGT CAGGAAGGAA GGAGCTTGGG AGGAAATGGA AAGAGCATGA 000320
000321 AAACAAAGGA CAAATAGATG GAATACCTCG CTTTAGGTTG ACAGCTTTTA AAAATGTAAG GATTTTTGGT AGGATGATCC 000400
000401 CAGAAAATGA TGAACTTGTA CTAGAGCACT TGAAAGATGT GAAAATAAAT CTTTCAGGGG TTGAGAAACC AATGAGCTTC 000480
000481 ACCACAAAAT TTAAGTTATA GAAATATTTT TCAGTGAAGT GAAGTTCTGA CAAAAACATG TCAAATATTA TCAGACCCAG 000560
000561 ATGATTCCGA TCTCTTCTCT CAAGGGCCAG GAACAATCAG CAGCACAGGG TGTGAGATCT GTTGGAAAGA GGGGAAAAAT 000640
000641 ATTATGGTGA AAAATATCAA GAAGCAAAAA TGTGAGGGTC CTGGAAGTGT TGTACTTACC AGTAGGAACA TTCTCAGCTA 000720
000721 TTCTTTTTCC CCTACATATT TCTATTCCCC AGGTTCTGCT GAGCATAGAG TATGGGATAC GGCTACTGAG GATAAACTGG 000800
000801 AATACCTTTT CCAAGAACGT CTCCCAATAT CTGAATTATT CTTCTCTAAA GAAGCGGCTG AATATAAGTA TGAAAATTCT 000880
000881 GATGAGGAGG CTCAAGAAG
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Predicted Small Protein

Name NONHSAT138105_smProtein_560:649
Length 30
Molecular weight 3125.6465
Aromaticity 0.0344827586207
Instability index 64.4448275862
Isoelectric point 11.0969848633
Runs 5
Runs residual 0.0271551724138
Runs probability 0.0472354707648
Amino acid sequence MIPISSLKGQEQSAAQGVRSVGKRGKILW
Secondary structure LLLLLLLLLHHHHHHHHHHHHLLLLEEEL
PRMN -
PiMo -