Difference between revisions of "NONHSAT138288"
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sequence = <dnaseq>tgattgttatgcttttcctcccccagcacccagagatcctctctgcaccacaccaccttgtctgctgggaagtgggggaggagtggcctcagtgattcaagactctcctttctacctcttgagagtgtctttcagcaatacgaagttgaaaccagggtctccctctgtaacccagcgtggagtgcagtggcacaaacatggctctctgcagccttgacctcctaggctcaagcaatcctcctgcctcagccttctgagtagttgggatcacaagagtgcaccactgcatctagctaattatgttattttactttttaaagagacagggtctcactttgtttgccaggctggtctcaaactgctgggctcaagcgattctcctgcctcagtctcccaaagtggtgagattataggtgtgaaccaccgctc</dnaseq>| | sequence = <dnaseq>tgattgttatgcttttcctcccccagcacccagagatcctctctgcaccacaccaccttgtctgctgggaagtgggggaggagtggcctcagtgattcaagactctcctttctacctcttgagagtgtctttcagcaatacgaagttgaaaccagggtctccctctgtaacccagcgtggagtgcagtggcacaaacatggctctctgcagccttgacctcctaggctcaagcaatcctcctgcctcagccttctgagtagttgggatcacaagagtgcaccactgcatctagctaattatgttattttactttttaaagagacagggtctcactttgtttgccaggctggtctcaaactgctgggctcaagcgattctcctgcctcagtctcccaaagtggtgagattataggtgtgaaccaccgctc</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG055168]] | + | [[Category:Intergenic]][[Category:NONHSAG055168]][[Category:Transcripts]] |
Latest revision as of 02:49, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
429 nt |
Genomic location |
chrX-:117396455..117397573 |
Exon number |
2 |
Exons |
117396455..117396728,117397419..117397573 |
Genome context |
|
Sequence |
000001 tgattgttat gcttttcctc ccccagcacc cagagatcct ctctgcacca caccaccttg tctgctggga agtgggggag 000080
000081 gagtggcctc agtgattcaa gactctcctt tctacctctt gagagtgtct ttcagcaata cgaagttgaa accagggtct 000160 000161 ccctctgtaa cccagcgtgg agtgcagtgg cacaaacatg gctctctgca gccttgacct cctaggctca agcaatcctc 000240 000241 ctgcctcagc cttctgagta gttgggatca caagagtgca ccactgcatc tagctaatta tgttatttta ctttttaaag 000320 000321 agacagggtc tcactttgtt tgccaggctg gtctcaaact gctgggctca agcgattctc ctgcctcagt ctcccaaagt 000400 000401 ggtgagatta taggtgtgaa ccaccgctc |
Predicted Small Protein
Name | NONHSAT138288_smProtein_299:412 |
Length | 38 |
Molecular weight | 4322.2359 |
Aromaticity | 0.135135135135 |
Instability index | 68.8948648649 |
Isoelectric point | 11.008605957 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0187876952583 |
Amino acid sequence | MLFYFLKRQGLTLFARLVSNCWAQAILLPQSPKVVRL |
Secondary structure | LHHHHHHHHLHHHHHHHHHHHHHHHHHLLLLLLEELL |
PRMN | - |
PiMo | - |