Difference between revisions of "NONHSAT138380"

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sequence = <dnaseq>GGGAAGGAAGGCGCTGCCAGGAAAGGGGATCGCGAAGGGGAGCGGGAGCAGGAGCGAACTAGCGCGAGCGTCTGGGGCACTTTAGCCGCCCCTTTCCAGCCGCCCCCTCACGCGCGAGCTCCCCCGCCCCCCGGGCGGCTGCAGCGCTTCCCTCACCCCCACTCCCTGAGGTTTTTCTTCCCCCAGTCCCTCAGCTGCTGCTGCTGCTCAGGAGGTCAGATCTGCCACTGATGGTAATACCAGCACCACTCCGCCCACCTCTGCCAAGAAGAGAAAGTTAAAcagcagcagcagtagcagcagtaacagtagTAACGAGAGAGAAGACTTTGATTCCACCTCTTCCTCCTCTTCCACTCCTCCTTTACAACCCAGGGATTCGGCATCCCCTTCAACCTCGTCCTTCTGCCTGGGGGTTTCAGTGGCTGCTTCCAGCCACGTACCGATACAGAAGAAGCTGCGTTTTGAAGACACCCTGGAGTTTGTAGGGTTTGATGCGAAGATGGCTGAGGAAtcctcctcctcctcctcctcATCTTCACCAACTGCTGCAACATCTCAGCAGCAGCAACTTAAAAATAAGAGTATATTAATCTCTTCTGTGGCTTCGGTGCATCATGCAAACGGCCTAGCCAAATCTTCTACCACCGTCTCTAGCTTTGCTAACAGCAAACCTGGCTCTGCTAAGAAGTTAGTGATCAAGAACTTTAAAGATAAGCCTAAATTACCAGAAAACTACACAGATGAAACCTGGCAAAAACTGAAAGAAGCAGTGGAAGCTATTCAGAATAGTACTTCAATTAAGTACAATTTAGAAGAACTCTACCAGGTATGTA</dnaseq>|
 
sequence = <dnaseq>GGGAAGGAAGGCGCTGCCAGGAAAGGGGATCGCGAAGGGGAGCGGGAGCAGGAGCGAACTAGCGCGAGCGTCTGGGGCACTTTAGCCGCCCCTTTCCAGCCGCCCCCTCACGCGCGAGCTCCCCCGCCCCCCGGGCGGCTGCAGCGCTTCCCTCACCCCCACTCCCTGAGGTTTTTCTTCCCCCAGTCCCTCAGCTGCTGCTGCTGCTCAGGAGGTCAGATCTGCCACTGATGGTAATACCAGCACCACTCCGCCCACCTCTGCCAAGAAGAGAAAGTTAAAcagcagcagcagtagcagcagtaacagtagTAACGAGAGAGAAGACTTTGATTCCACCTCTTCCTCCTCTTCCACTCCTCCTTTACAACCCAGGGATTCGGCATCCCCTTCAACCTCGTCCTTCTGCCTGGGGGTTTCAGTGGCTGCTTCCAGCCACGTACCGATACAGAAGAAGCTGCGTTTTGAAGACACCCTGGAGTTTGTAGGGTTTGATGCGAAGATGGCTGAGGAAtcctcctcctcctcctcctcATCTTCACCAACTGCTGCAACATCTCAGCAGCAGCAACTTAAAAATAAGAGTATATTAATCTCTTCTGTGGCTTCGGTGCATCATGCAAACGGCCTAGCCAAATCTTCTACCACCGTCTCTAGCTTTGCTAACAGCAAACCTGGCTCTGCTAAGAAGTTAGTGATCAAGAACTTTAAAGATAAGCCTAAATTACCAGAAAACTACACAGATGAAACCTGGCAAAAACTGAAAGAAGCAGTGGAAGCTATTCAGAATAGTACTTCAATTAAGTACAATTTAGAAGAACTCTACCAGGTATGTA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG055217]]
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[[Category:Sense]][[Category:NONHSAG055217]][[Category:Transcripts]]

Latest revision as of 02:49, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT138380

Source

NONCODE4.0

Same with

,

Classification

sense

Length

836 nt

Genomic location

chrX-:119691772..119695157

Exon number

3

Exons

119691772..119691894,119693938..119694480,119694988..119695157

Genome context

Sequence
000001 GGGAAGGAAG GCGCTGCCAG GAAAGGGGAT CGCGAAGGGG AGCGGGAGCA GGAGCGAACT AGCGCGAGCG TCTGGGGCAC 000080
000081 TTTAGCCGCC CCTTTCCAGC CGCCCCCTCA CGCGCGAGCT CCCCCGCCCC CCGGGCGGCT GCAGCGCTTC CCTCACCCCC 000160
000161 ACTCCCTGAG GTTTTTCTTC CCCCAGTCCC TCAGCTGCTG CTGCTGCTCA GGAGGTCAGA TCTGCCACTG ATGGTAATAC 000240
000241 CAGCACCACT CCGCCCACCT CTGCCAAGAA GAGAAAGTTA AAcagcagca gcagtagcag cagtaacagt agTAACGAGA 000320
000321 GAGAAGACTT TGATTCCACC TCTTCCTCCT CTTCCACTCC TCCTTTACAA CCCAGGGATT CGGCATCCCC TTCAACCTCG 000400
000401 TCCTTCTGCC TGGGGGTTTC AGTGGCTGCT TCCAGCCACG TACCGATACA GAAGAAGCTG CGTTTTGAAG ACACCCTGGA 000480
000481 GTTTGTAGGG TTTGATGCGA AGATGGCTGA GGAAtcctcc tcctcctcct cctcATCTTC ACCAACTGCT GCAACATCTC 000560
000561 AGCAGCAGCA ACTTAAAAAT AAGAGTATAT TAATCTCTTC TGTGGCTTCG GTGCATCATG CAAACGGCCT AGCCAAATCT 000640
000641 TCTACCACCG TCTCTAGCTT TGCTAACAGC AAACCTGGCT CTGCTAAGAA GTTAGTGATC AAGAACTTTA AAGATAAGCC 000720
000721 TAAATTACCA GAAAACTACA CAGATGAAAC CTGGCAAAAA CTGAAAGAAG CAGTGGAAGC TATTCAGAAT AGTACTTCAA 000800
000801 TTAAGTACAA TTTAGAAGAA CTCTACCAGG TATGTA
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Predicted Small Protein

Name NONHSAT138380_smProtein_494:592
Length 33
Molecular weight 3882.5483
Aromaticity 0.0625
Instability index 100.61875
Isoelectric point 12.0084838867
Runs 5
Runs residual 0.0353954081633
Runs probability 0.0331390213743
Amino acid sequence MRRWLRNPPPPPPHLHQLLQHLSSSNLKIRVY
Secondary structure LLLLLLLLLLLLHHHHHHHHHHLLLLLLEEEL
PRMN -
PiMo -