Difference between revisions of "NONHSAT138459"
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sequence = <dnaseq>CAAAAGTACAGTAACGAAGTATTGAAAAGAAAATTTTGGAGACATTGGAGCATATTATATATAGCTTGTGGAAAGACATAAGGCTACAGATGGAATGGAACATTCCTGTTTTCTTGAAGAAATTCACATACACATAGCTGACCTGACTAGTACTTCAGCTCTTCCACAGCCTTCTATAAAGGTTCTTTCTTCTGCAAAGAAAACAAAACAAAACAAAACAAAACAAAAAAAAACAAAAAAAGCGCAAAAAACAAAAAAACAAAAAAAAGCAAAGTAAAATTTAAAAATACAGAAAACAAACAACAAAAAAGAATTCAACCATAAATAGTGACTATTATTTTCAGTGTGTCCTTCATGTGAAAGCTATTAAGGACCAAATATACTACTGTTCATAAGAAGAAATTACTTTCTAAACAGTAACTGAAAATACTTAGAGTTAAACTTGCTGTGGATTTTGTCTTGGCAGTTGTCATCTTACATTATTTGTCAAAGGAAATGTGTTTGGCAGTTAAAAATCTTTCCTTAGATTTAGTGGTGGACTTTAACCTCTTAAATAAATGTTAGTATATCAGATTGTGTCCTTGAAAAATATTTTACTTGTATGAATCATGACAACGTCTAAATCTTTACTATTCTTCTGGCAAAAGCATCAGTAAGAAAGAAGGCGAAAAAGAGAAGTATAGCCTTTATGTCAGAAAAACATTCTTTTTAGCTGCTTACTTTCTCATGAAAAGTAAAGATGTTTACAGTGTATGCCAAGTTTTAAGTTTCTGTATAACAACAGGTAGAGGTTCTAATCATATTGAAAATTGTGTTATAATGGTCTGAGCCATGTTGCTAGGAAACAATAGGTTCCAATTTTGTATTCCTGCTCTCCTGTGCTGAAAAGTGACTGGATACTGTACAGGTTCATGTTCTCTGGCTGCAGTTAAATGGTCTTTTGCATTTTGCTCTGGCTTTCAGGCCAGAAGCATGCATTTTTCTACAAGAGCATCACAACAACATGCTGTAAATATTTAAAGTTAAACATTATGTGTTGATATTTGAAAGAAAAGTACTTTGAATATTTCATTTTTAAAAAATAAAATTGCCAATGAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>CAAAAGTACAGTAACGAAGTATTGAAAAGAAAATTTTGGAGACATTGGAGCATATTATATATAGCTTGTGGAAAGACATAAGGCTACAGATGGAATGGAACATTCCTGTTTTCTTGAAGAAATTCACATACACATAGCTGACCTGACTAGTACTTCAGCTCTTCCACAGCCTTCTATAAAGGTTCTTTCTTCTGCAAAGAAAACAAAACAAAACAAAACAAAACAAAAAAAAACAAAAAAAGCGCAAAAAACAAAAAAACAAAAAAAAGCAAAGTAAAATTTAAAAATACAGAAAACAAACAACAAAAAAGAATTCAACCATAAATAGTGACTATTATTTTCAGTGTGTCCTTCATGTGAAAGCTATTAAGGACCAAATATACTACTGTTCATAAGAAGAAATTACTTTCTAAACAGTAACTGAAAATACTTAGAGTTAAACTTGCTGTGGATTTTGTCTTGGCAGTTGTCATCTTACATTATTTGTCAAAGGAAATGTGTTTGGCAGTTAAAAATCTTTCCTTAGATTTAGTGGTGGACTTTAACCTCTTAAATAAATGTTAGTATATCAGATTGTGTCCTTGAAAAATATTTTACTTGTATGAATCATGACAACGTCTAAATCTTTACTATTCTTCTGGCAAAAGCATCAGTAAGAAAGAAGGCGAAAAAGAGAAGTATAGCCTTTATGTCAGAAAAACATTCTTTTTAGCTGCTTACTTTCTCATGAAAAGTAAAGATGTTTACAGTGTATGCCAAGTTTTAAGTTTCTGTATAACAACAGGTAGAGGTTCTAATCATATTGAAAATTGTGTTATAATGGTCTGAGCCATGTTGCTAGGAAACAATAGGTTCCAATTTTGTATTCCTGCTCTCCTGTGCTGAAAAGTGACTGGATACTGTACAGGTTCATGTTCTCTGGCTGCAGTTAAATGGTCTTTTGCATTTTGCTCTGGCTTTCAGGCCAGAAGCATGCATTTTTCTACAAGAGCATCACAACAACATGCTGTAAATATTTAAAGTTAAACATTATGTGTTGATATTTGAAAGAAAAGTACTTTGAATATTTCATTTTTAAAAAATAAAATTGCCAATGAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG055264]] | + | [[Category:Sense]][[Category:NONHSAG055264]][[Category:Transcripts]] |
Latest revision as of 02:50, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT138459 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1112 nt |
| Genomic location |
chrX-:123509753..123510852 |
| Exon number |
1 |
| Exons |
123509753..123510852 |
| Genome context |
|
| Sequence |
000001 CAAAAGTACA GTAACGAAGT ATTGAAAAGA AAATTTTGGA GACATTGGAG CATATTATAT ATAGCTTGTG GAAAGACATA 000080
000081 AGGCTACAGA TGGAATGGAA CATTCCTGTT TTCTTGAAGA AATTCACATA CACATAGCTG ACCTGACTAG TACTTCAGCT 000160 000161 CTTCCACAGC CTTCTATAAA GGTTCTTTCT TCTGCAAAGA AAACAAAACA AAACAAAACA AAACAAAAAA AAACAAAAAA 000240 000241 AGCGCAAAAA ACAAAAAAAC AAAAAAAAGC AAAGTAAAAT TTAAAAATAC AGAAAACAAA CAACAAAAAA GAATTCAACC 000320 000321 ATAAATAGTG ACTATTATTT TCAGTGTGTC CTTCATGTGA AAGCTATTAA GGACCAAATA TACTACTGTT CATAAGAAGA 000400 000401 AATTACTTTC TAAACAGTAA CTGAAAATAC TTAGAGTTAA ACTTGCTGTG GATTTTGTCT TGGCAGTTGT CATCTTACAT 000480 000481 TATTTGTCAA AGGAAATGTG TTTGGCAGTT AAAAATCTTT CCTTAGATTT AGTGGTGGAC TTTAACCTCT TAAATAAATG 000560 000561 TTAGTATATC AGATTGTGTC CTTGAAAAAT ATTTTACTTG TATGAATCAT GACAACGTCT AAATCTTTAC TATTCTTCTG 000640 000641 GCAAAAGCAT CAGTAAGAAA GAAGGCGAAA AAGAGAAGTA TAGCCTTTAT GTCAGAAAAA CATTCTTTTT AGCTGCTTAC 000720 000721 TTTCTCATGA AAAGTAAAGA TGTTTACAGT GTATGCCAAG TTTTAAGTTT CTGTATAACA ACAGGTAGAG GTTCTAATCA 000800 000801 TATTGAAAAT TGTGTTATAA TGGTCTGAGC CATGTTGCTA GGAAACAATA GGTTCCAATT TTGTATTCCT GCTCTCCTGT 000880 000881 GCTGAAAAGT GACTGGATAC TGTACAGGTT CATGTTCTCT GGCTGCAGTT AAATGGTCTT TTGCATTTTG CTCTGGCTTT 000960 000961 CAGGCCAGAA GCATGCATTT TTCTACAAGA GCATCACAAC AACATGCTGT AAATATTTAA AGTTAAACAT TATGTGTTGA 001040 001041 TATTTGAAAG AAAAGTACTT TGAATATTTC ATTTTTAAAA AATAAAATTG CCAATGAAAA AAAAAAAAAA AA |
Predicted Small Protein
| Name | NONHSAT138459_smProtein_932:1039 |
| Length | 36 |
| Molecular weight | 4149.1042 |
| Aromaticity | 0.171428571429 |
| Instability index | 42.526 |
| Isoelectric point | 9.12945556641 |
| Runs | 6 |
| Runs residual | 0.00968523002421 |
| Runs probability | 0.00934758287698 |
| Amino acid sequence | MVFCILLWLSGQKHAFFYKSITTTCCKYLKLNIMC |
| Secondary structure | LEEEEHHHHLLLHHHHHHHHHHHHHHHHHHHLLLL |
| PRMN | - |
| PiMo | - |
