Difference between revisions of "ENST00000475953.1"

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sequence = <dnaseq>TCCCGTTGTTATGGAGGTAGGCTCTCTAGGAATCTGGGAGTAGTAGCTGGGGGGCAAGAGCAAATAAAGAGCTCGAGCTTCTGTGGTCTCTGGGGAGATGTTCCCGGGAAGCCTGTCTAGAGGGCGGAGGGCAGCTGTTGAGATGGCGTGGCTCCCCGGCTCCTGCGCCCGCGTGGCTTTCGCGGCGGGCGCTGCGGCCCGGTATTGGACAGCCTGGCAGGGCAGCGCGGGGCCGAATCCGGCTGCCGTGGCTGAGGCTCATGGATCACTCTTTTGTGGTAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAATAAAGGATGGTCTTGGGTGTCAATTCTTGAAAA</dnaseq>|
 
sequence = <dnaseq>TCCCGTTGTTATGGAGGTAGGCTCTCTAGGAATCTGGGAGTAGTAGCTGGGGGGCAAGAGCAAATAAAGAGCTCGAGCTTCTGTGGTCTCTGGGGAGATGTTCCCGGGAAGCCTGTCTAGAGGGCGGAGGGCAGCTGTTGAGATGGCGTGGCTCCCCGGCTCCTGCGCCCGCGTGGCTTTCGCGGCGGGCGCTGCGGCCCGGTATTGGACAGCCTGGCAGGGCAGCGCGGGGCCGAATCCGGCTGCCGTGGCTGAGGCTCATGGATCACTCTTTTGTGGTAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAATAAAGGATGGTCTTGGGTGTCAATTCTTGAAAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000175061.13]]
+
[[Category:Intergenic]][[Category:ENSG00000175061.13]][[Category:lnc-TRPV2-1]][[Category:Transcripts]]

Latest revision as of 16:23, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000475953.1

Source

Gencode19

Same with

lnc-TRPV2-1:18

Classification

intergenic

Length

1201 nt

Genomic location

chr17+:16342359..16345342

Exon number

5

Exons

16342359..16342728,16342974..16343017,16343499..16343567,16344388..16344444,16344682..16345342

Genome context

Sequence
000001 TCCCGTTGTT ATGGAGGTAG GCTCTCTAGG AATCTGGGAG TAGTAGCTGG GGGGCAAGAG CAAATAAAGA GCTCGAGCTT 000080
000081 CTGTGGTCTC TGGGGAGATG TTCCCGGGAA GCCTGTCTAG AGGGCGGAGG GCAGCTGTTG AGATGGCGTG GCTCCCCGGC 000160
000161 TCCTGCGCCC GCGTGGCTTT CGCGGCGGGC GCTGCGGCCC GGTATTGGAC AGCCTGGCAG GGCAGCGCGG GGCCGAATCC 000240
000241 GGCTGCCGTG GCTGAGGCTC ATGGATCACT CTTTTGTGGT AGGGCCACAT CTGCCAGAGC CTGGAGTCTG CGAAGGCCGG 000320
000321 GACCCGGTTC CCCGGCCCAC AGTGGGGGTG TGCAAACCCG AGAGAACTGG ATTGCGTACC CACTGCAGAG TGCTGAAGAC 000400
000401 GGGGTAGCCA CGAGGTTGCA AATTCGTGAA GAATCAGCAT CATGTTTGGC AGCTGAGTAT TGGAGCCAGG AGCCTGCCAT 000480
000481 GAGGTTTTGA GAACAGAGTG CTGTTTTAGA GCTGGCAGCA GCATCTCAGC CCAAGAGAAG GTTATATTCC CAGAGGATGT 000560
000561 CAGTCCCAAG GACCAGTAGC TGCCATCAGT TTGGATTCTG AAAACTAACT GGCATCAACA CTGGGTGTAG AAACATGCTT 000640
000641 GCCTTATGTA TCAGAGGACA TGCTCAGCAG ATCCAAGAGA TATATTTGGC AACTTTTTCT AGAAAAGGCA CATTGGGTAT 000720
000721 CATTCATTAC ATTCTTGAGT TTTTTTGGGT TTTTTTTTTT TTTTTTGAGA CAGTCTTGCT GTATTGCCCA GGCTGGAGTG 000800
000801 TGGTGGCACA ATCACAGCTC ATTGCATCCT CAATCACCCA GGCCTAAGCA ATCCTCCCAC CTTGTAGCTG GGACTACAGC 000880
000881 TCACAGCACA CCTGGCTAAA ATTTTTTTTT TGTTGAGACG GATTCTCTAT GTTGCCCAGG CTGGTCTCAG GCTCCTGGGC 000960
000961 TCAGATGGTC CTCCTGCCTC AGCTTCCAAA GGCACAGGCC AAGTTGTAGC TTTGTCCCTT GCCATCATGC CCAACAAGAG 001040
001041 GTTCTATACC TTTTAATGAA TTGACTTTCA TAAATTGGTT ATGTTGGTGG GCAAAGTTCT TTAAGCTGGA AATTGTAAAT 001120
001121 TCCTCCTGAA ATGTTTTTTC ATGCAGTTAC CATGAACTAA TACTACAATA AAGGATGGTC TTGGGTGTCA ATTCTTGAAA 001200
001201 A
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Predicted Small Protein

Name ENST00000475953.1_smProtein_659:898
Length 80
Molecular weight 9214.4964
Aromaticity 0.189873417722
Instability index 66.6151898734
Isoelectric point 10.4531860352
Runs 11
Runs residual 0.00104040228889
Runs probability 0.0156091920798
Amino acid sequence MLSRSKRYIWQLFLEKAHWVSFITFLSFFGFFFFFLRQSCCIAQAGVWWHNHSSLHPQSP
RPKQSSHLVAGTTAHSTPG
Secondary structure LLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEELLLLLLLLLLL
LLLLLLEEEELLEELLLLL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooooo
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