Difference between revisions of "ENST00000506053.1"
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sequence = <dnaseq>TCTGACTTTTGTCTTTATGGCTAAAGAAGCAGTGCTGTATCCCACAGTAGTACAAAGGGCAAAAGATGAGTGCCAGACAAATCCTGCCCTGATTCTGGGGACCATGCCTGTGGAGATGCACAGTTCTACCATTCAAAATGACTATCTGAAAATACCTCCTAAGAAGGACAAAACTTTTCTTCAGCCAAGAGGGCACTTGTTAATATGATTAGATACATATGTAATGGTGTCCCCCTCCCCTCTTAGCCCCTCAGTGTGTGTTCTCTCAGTCAGTGTATCTACATGCAGGAGACATTAAAGGATGGATGTAACTTCAGACCTTCATTTCCCCATAAGTATTGCTTTCAGAGAATATCTAATGAAGTCACATGGATGAAGATTTCTGTATCATTTGTTTCCCAGAATGGCTCTCCAACTTACATTTCATCATCCACCCACATATCCACTTATCCATTCAACCTTCATGTACTGACTGAAAACTCCTCTTATATAGTTTTCCTCAGCAGTTTCCTCTTCTGGGGATTTTCTGCTGTTTTGGTAACCTGTTTTAATGTTGTATTTTATGTGTTCCTAAGGGCAATGCAAGTTGTTTAAAGAGGCAATTATCTCATGTGATTTATGAGATTTGCTGGACAAATTCCAATAAAAAATG</dnaseq>| | sequence = <dnaseq>TCTGACTTTTGTCTTTATGGCTAAAGAAGCAGTGCTGTATCCCACAGTAGTACAAAGGGCAAAAGATGAGTGCCAGACAAATCCTGCCCTGATTCTGGGGACCATGCCTGTGGAGATGCACAGTTCTACCATTCAAAATGACTATCTGAAAATACCTCCTAAGAAGGACAAAACTTTTCTTCAGCCAAGAGGGCACTTGTTAATATGATTAGATACATATGTAATGGTGTCCCCCTCCCCTCTTAGCCCCTCAGTGTGTGTTCTCTCAGTCAGTGTATCTACATGCAGGAGACATTAAAGGATGGATGTAACTTCAGACCTTCATTTCCCCATAAGTATTGCTTTCAGAGAATATCTAATGAAGTCACATGGATGAAGATTTCTGTATCATTTGTTTCCCAGAATGGCTCTCCAACTTACATTTCATCATCCACCCACATATCCACTTATCCATTCAACCTTCATGTACTGACTGAAAACTCCTCTTATATAGTTTTCCTCAGCAGTTTCCTCTTCTGGGGATTTTCTGCTGTTTTGGTAACCTGTTTTAATGTTGTATTTTATGTGTTCCTAAGGGCAATGCAAGTTGTTTAAAGAGGCAATTATCTCATGTGATTTATGAGATTTGCTGGACAAATTCCAATAAAAAATG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:lnc-LOX-4]] | + | [[Category:Antisense]][[Category:lnc-LOX-4]][[Category:NONHSAG041374]][[Category:ENSG00000250328.1]][[Category:Transcripts]] |
Latest revision as of 16:37, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000506053.1 |
| Source |
Gencode19 |
| Same with |
lnc-LOX-4:4,NONHSAT103476 |
| Classification |
antisense |
| Length |
652 nt |
| Genomic location |
chr5-:121772457..121804754 |
| Exon number |
2 |
| Exons |
121772457..121773032,121804679..121804754 |
| Genome context |
|
| Sequence |
000001 TCTGACTTTT GTCTTTATGG CTAAAGAAGC AGTGCTGTAT CCCACAGTAG TACAAAGGGC AAAAGATGAG TGCCAGACAA 000080
000081 ATCCTGCCCT GATTCTGGGG ACCATGCCTG TGGAGATGCA CAGTTCTACC ATTCAAAATG ACTATCTGAA AATACCTCCT 000160 000161 AAGAAGGACA AAACTTTTCT TCAGCCAAGA GGGCACTTGT TAATATGATT AGATACATAT GTAATGGTGT CCCCCTCCCC 000240 000241 TCTTAGCCCC TCAGTGTGTG TTCTCTCAGT CAGTGTATCT ACATGCAGGA GACATTAAAG GATGGATGTA ACTTCAGACC 000320 000321 TTCATTTCCC CATAAGTATT GCTTTCAGAG AATATCTAAT GAAGTCACAT GGATGAAGAT TTCTGTATCA TTTGTTTCCC 000400 000401 AGAATGGCTC TCCAACTTAC ATTTCATCAT CCACCCACAT ATCCACTTAT CCATTCAACC TTCATGTACT GACTGAAAAC 000480 000481 TCCTCTTATA TAGTTTTCCT CAGCAGTTTC CTCTTCTGGG GATTTTCTGC TGTTTTGGTA ACCTGTTTTA ATGTTGTATT 000560 000561 TTATGTGTTC CTAAGGGCAA TGCAAGTTGT TTAAAGAGGC AATTATCTCA TGTGATTTAT GAGATTTGCT GGACAAATTC 000640 000641 CAATAAAAAA TG |
Predicted Small Protein
| Name | ENST00000506053.1_smProtein_368:475 |
| Length | 36 |
| Molecular weight | 4152.7503 |
| Aromaticity | 0.114285714286 |
| Instability index | 68.2171428571 |
| Isoelectric point | 4.86065673828 |
| Runs | 7 |
| Runs residual | 0.0188861985472 |
| Runs probability | 0.013690160749 |
| Amino acid sequence | MDEDFCIICFPEWLSNLHFIIHPHIHLSIQPSCTD |
| Secondary structure | LLLLEEEELLLHHHHLLLLEELLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
