Difference between revisions of "ENST00000501173.2"
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sequence = <dnaseq>GTGGTACCCGAGGCCGGGCCGGAGCCGCAGGCCAGCCGCGATTCCTTCGGGCGATGCTGGGGGCTTTCCGGTCGGGGCCGCAGCCGCTTCCGGAGCCGCGGGCGAGGTGCGTTCCCCAGCCTGGTTTGCTCTGGGCTCTGACCCGCCGCCGCGAATCTCCGCTCGTAACTCCGGGCCTGAACCTGGAGGAGGGAGGATTTCCTCTGTGCAGCTTTCGAGCGGTAGACTCACCCTGCCAGGCAGACCTAGATTGGCATAACCAGAGATCAGTTCCAGTTGTGATGCAGTGGGTGTCTACACACTTCTGATGACACCTTTATTTTAAAAGCTGATGTTCCAAGTCGATTCACCATGATCTTGGCTGGCTGTCTTCTTCCTTCATGGCTGCTAGTAATGACAATTCAGTGGCTGTTTCTTCAGCTGTGCAAAGTTGGAACATGTTTGGGAGTTCAACGGCATTGGTTTCTGGTGCAAGCGGTCTTCTCTGTCTTCTTTATGGCCAGTAAAATTCTCCAGAAGAGATTTATGGCAGCCTCACTCCCAGTAGTTTCTGCATTTAGTGAGATAAGGAATGGATTTTCTTCTGTGTATTGCTGACACGAACAGGAGACGGAAATACTGAGTAGAAGAGGGCGGTTCCCTGGCTAAGGCCCCACCCTCAAGCCTGGATACCCGCGGCCCTAAATGAGAAGAGGCGTTTCTGTTTGGGGCCCAAAAAGTTGCTTTTTGACCCACCACGCCCCCTATCCTGCCCCCATATAAACCCCAAACCCCAACCTCCAGAGCATACCAGCAGGTGAGGAGATACGAGGCAAGCCGACTGACGGCAAAACGACGTAGCAGAGAAAGAGAGAAGAGGAGGGACGTCTGGACACCGAGAGATGTTTGGCTCGGGGCAGTCAGAGCGGAGTCCAGCCCCTGGGCGGCCCAACTCCAGGGGAAGATCACC</dnaseq>| | sequence = <dnaseq>GTGGTACCCGAGGCCGGGCCGGAGCCGCAGGCCAGCCGCGATTCCTTCGGGCGATGCTGGGGGCTTTCCGGTCGGGGCCGCAGCCGCTTCCGGAGCCGCGGGCGAGGTGCGTTCCCCAGCCTGGTTTGCTCTGGGCTCTGACCCGCCGCCGCGAATCTCCGCTCGTAACTCCGGGCCTGAACCTGGAGGAGGGAGGATTTCCTCTGTGCAGCTTTCGAGCGGTAGACTCACCCTGCCAGGCAGACCTAGATTGGCATAACCAGAGATCAGTTCCAGTTGTGATGCAGTGGGTGTCTACACACTTCTGATGACACCTTTATTTTAAAAGCTGATGTTCCAAGTCGATTCACCATGATCTTGGCTGGCTGTCTTCTTCCTTCATGGCTGCTAGTAATGACAATTCAGTGGCTGTTTCTTCAGCTGTGCAAAGTTGGAACATGTTTGGGAGTTCAACGGCATTGGTTTCTGGTGCAAGCGGTCTTCTCTGTCTTCTTTATGGCCAGTAAAATTCTCCAGAAGAGATTTATGGCAGCCTCACTCCCAGTAGTTTCTGCATTTAGTGAGATAAGGAATGGATTTTCTTCTGTGTATTGCTGACACGAACAGGAGACGGAAATACTGAGTAGAAGAGGGCGGTTCCCTGGCTAAGGCCCCACCCTCAAGCCTGGATACCCGCGGCCCTAAATGAGAAGAGGCGTTTCTGTTTGGGGCCCAAAAAGTTGCTTTTTGACCCACCACGCCCCCTATCCTGCCCCCATATAAACCCCAAACCCCAACCTCCAGAGCATACCAGCAGGTGAGGAGATACGAGGCAAGCCGACTGACGGCAAAACGACGTAGCAGAGAAAGAGAGAAGAGGAGGGACGTCTGGACACCGAGAGATGTTTGGCTCGGGGCAGTCAGAGCGGAGTCCAGCCCCTGGGCGGCCCAACTCCAGGGGAAGATCACC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-FBN2-2]][[Category:NONHSAG041473]] | + | [[Category:Intergenic]][[Category:lnc-FBN2-2]][[Category:NONHSAG041473]][[Category:ENSG00000245937.3]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:31, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000501173.2 |
| Source |
Gencode19 |
| Same with |
lnc-FBN2-2:3,NONHSAT103646 |
| Classification |
intergenic |
| Length |
949 nt |
| Genomic location |
chr5-:127302241..127418767 |
| Exon number |
4 |
| Exons |
127302241..127302620,127396836..127396936,127398066..127398192,127418427..127418767 |
| Genome context |
|
| Sequence |
000001 GTGGTACCCG AGGCCGGGCC GGAGCCGCAG GCCAGCCGCG ATTCCTTCGG GCGATGCTGG GGGCTTTCCG GTCGGGGCCG 000080
000081 CAGCCGCTTC CGGAGCCGCG GGCGAGGTGC GTTCCCCAGC CTGGTTTGCT CTGGGCTCTG ACCCGCCGCC GCGAATCTCC 000160 000161 GCTCGTAACT CCGGGCCTGA ACCTGGAGGA GGGAGGATTT CCTCTGTGCA GCTTTCGAGC GGTAGACTCA CCCTGCCAGG 000240 000241 CAGACCTAGA TTGGCATAAC CAGAGATCAG TTCCAGTTGT GATGCAGTGG GTGTCTACAC ACTTCTGATG ACACCTTTAT 000320 000321 TTTAAAAGCT GATGTTCCAA GTCGATTCAC CATGATCTTG GCTGGCTGTC TTCTTCCTTC ATGGCTGCTA GTAATGACAA 000400 000401 TTCAGTGGCT GTTTCTTCAG CTGTGCAAAG TTGGAACATG TTTGGGAGTT CAACGGCATT GGTTTCTGGT GCAAGCGGTC 000480 000481 TTCTCTGTCT TCTTTATGGC CAGTAAAATT CTCCAGAAGA GATTTATGGC AGCCTCACTC CCAGTAGTTT CTGCATTTAG 000560 000561 TGAGATAAGG AATGGATTTT CTTCTGTGTA TTGCTGACAC GAACAGGAGA CGGAAATACT GAGTAGAAGA GGGCGGTTCC 000640 000641 CTGGCTAAGG CCCCACCCTC AAGCCTGGAT ACCCGCGGCC CTAAATGAGA AGAGGCGTTT CTGTTTGGGG CCCAAAAAGT 000720 000721 TGCTTTTTGA CCCACCACGC CCCCTATCCT GCCCCCATAT AAACCCCAAA CCCCAACCTC CAGAGCATAC CAGCAGGTGA 000800 000801 GGAGATACGA GGCAAGCCGA CTGACGGCAA AACGACGTAG CAGAGAAAGA GAGAAGAGGA GGGACGTCTG GACACCGAGA 000880 000881 GATGTTTGGC TCGGGGCAGT CAGAGCGGAG TCCAGCCCCT GGGCGGCCCA ACTCCAGGGG AAGATCACC |
Predicted Small Protein
| Name | ENST00000501173.2_smProtein_53:307 |
| Length | 85 |
| Molecular weight | 9408.7275 |
| Aromaticity | 0.0833333333333 |
| Instability index | 73.5916666667 |
| Isoelectric point | 7.78692626953 |
| Runs | 9 |
| Runs residual | 0.0268425841674 |
| Runs probability | 0.0478419596067 |
| Amino acid sequence | MLGAFRSGPQPLPEPRARCVPQPGLLWALTRRRESPLVTPGLNLEEGGFPLCSFRAVDSP CQADLDWHNQRSVPVVMQWVSTHF |
| Secondary structure | LLLLLLLLLLLLLLLLLEELLLLLHHHHHHLLLLLLLLLLLLLLLLLLLEEEEEEELLLL LLLLLLLLLLLLLLEEEEEEEELL |
| PRMN | - |
| PiMo | - |
