Difference between revisions of "ENST00000506534.2"
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sequence = <dnaseq>AAACTAAAAATGAGTGTGCGTACGCGTGGAGAGGGGGAACAAGGCTTCTCTAATCAGCAAAGGGGCTGTCGGCAGGCGATGTACAAATGAAAGCGCGCTTTCTAAATTTCCAAAGCACTAAAGGGAGAGAAATGCGCAATTACTGTGGGATTCGCCCAGAGGAGCAGCCTCAGGAGTTGAAGGGGATCCTGTCCCTCCCAGAGGAAAGCTCACGATTGGATTGGAACTTCTAGCGACTGCCTGAGGCGCGTCCTCCGGGTCATGGGGAAACAGAGGCAGAGACTTGGGAAGGAGAAATGGAGAAACCAGGGCAACGTGGTCAGTGCTGCAGCGCCATCCCTTTTTCACTAAGACCACCCTGGGCCCCTGGGCGGGAAGCCCTTCGCACACTCCAGCCGGGGAGAGTCCGGGCTGGGTTCCGCAGCGCCTGTGGCTGTGTGGCCGGGAGGCTCCTTGCTCTCGCCCGCGTGGTCCTGAGATCGGTCGCTCGTTCCCACAGGCCCCGGGATTGGCTGCACCACGCAGCTGTTGTCCAGTTCCGGAGCTGCCGCGTTCAATCCGAGTCCCTCCGATGCTTTCACTGATATTAAAATTTCACTTTTCGAA</dnaseq>| | sequence = <dnaseq>AAACTAAAAATGAGTGTGCGTACGCGTGGAGAGGGGGAACAAGGCTTCTCTAATCAGCAAAGGGGCTGTCGGCAGGCGATGTACAAATGAAAGCGCGCTTTCTAAATTTCCAAAGCACTAAAGGGAGAGAAATGCGCAATTACTGTGGGATTCGCCCAGAGGAGCAGCCTCAGGAGTTGAAGGGGATCCTGTCCCTCCCAGAGGAAAGCTCACGATTGGATTGGAACTTCTAGCGACTGCCTGAGGCGCGTCCTCCGGGTCATGGGGAAACAGAGGCAGAGACTTGGGAAGGAGAAATGGAGAAACCAGGGCAACGTGGTCAGTGCTGCAGCGCCATCCCTTTTTCACTAAGACCACCCTGGGCCCCTGGGCGGGAAGCCCTTCGCACACTCCAGCCGGGGAGAGTCCGGGCTGGGTTCCGCAGCGCCTGTGGCTGTGTGGCCGGGAGGCTCCTTGCTCTCGCCCGCGTGGTCCTGAGATCGGTCGCTCGTTCCCACAGGCCCCGGGATTGGCTGCACCACGCAGCTGTTGTCCAGTTCCGGAGCTGCCGCGTTCAATCCGAGTCCCTCCGATGCTTTCACTGATATTAAAATTTCACTTTTCGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-EMB-3]][[Category:NONHSAG040350]][[Category:ENSG00000251573.2]] | + | [[Category:Intergenic]][[Category:lnc-EMB-3]][[Category:NONHSAG040350]][[Category:ENSG00000251573.2]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:38, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000506534.2 |
| Source |
Gencode19 |
| Same with |
lnc-EMB-3:2,NONHSAT101379 |
| Classification |
intergenic |
| Length |
606 nt |
| Genomic location |
chr5-:50265051..50266001 |
| Exon number |
2 |
| Exons |
50265051..50265411,50265757..50266001 |
| Genome context |
|
| Sequence |
000001 AAACTAAAAA TGAGTGTGCG TACGCGTGGA GAGGGGGAAC AAGGCTTCTC TAATCAGCAA AGGGGCTGTC GGCAGGCGAT 000080
000081 GTACAAATGA AAGCGCGCTT TCTAAATTTC CAAAGCACTA AAGGGAGAGA AATGCGCAAT TACTGTGGGA TTCGCCCAGA 000160 000161 GGAGCAGCCT CAGGAGTTGA AGGGGATCCT GTCCCTCCCA GAGGAAAGCT CACGATTGGA TTGGAACTTC TAGCGACTGC 000240 000241 CTGAGGCGCG TCCTCCGGGT CATGGGGAAA CAGAGGCAGA GACTTGGGAA GGAGAAATGG AGAAACCAGG GCAACGTGGT 000320 000321 CAGTGCTGCA GCGCCATCCC TTTTTCACTA AGACCACCCT GGGCCCCTGG GCGGGAAGCC CTTCGCACAC TCCAGCCGGG 000400 000401 GAGAGTCCGG GCTGGGTTCC GCAGCGCCTG TGGCTGTGTG GCCGGGAGGC TCCTTGCTCT CGCCCGCGTG GTCCTGAGAT 000480 000481 CGGTCGCTCG TTCCCACAGG CCCCGGGATT GGCTGCACCA CGCAGCTGTT GTCCAGTTCC GGAGCTGCCG CGTTCAATCC 000560 000561 GAGTCCCTCC GATGCTTTCA CTGATATTAA AATTTCACTT TTCGAA |
Predicted Small Protein
| Name | ENST00000506534.2_smProtein_296:583 |
| Length | 96 |
| Molecular weight | 10631.3285 |
| Aromaticity | 0.0631578947368 |
| Instability index | 63.0863157895 |
| Isoelectric point | 11.6619262695 |
| Runs | 12 |
| Runs residual | 0.00273518441774 |
| Runs probability | 0.0432712123889 |
| Amino acid sequence | MEKPGQRGQCCSAIPFSLRPPWAPGREALRTLQPGRVRAGFRSACGCVAGRLLALARVVL RSVARSHRPRDWLHHAAVVQFRSCRVQSESLRCFH |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLEEELLLLHHHHHHHHHHHHHHHHH HHHHHHLLLLHHHHHHEEEEEEEEEEELLEEEELL |
| PRMN | - |
| PiMo | - |
