Difference between revisions of "ENST00000456560.2"
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sequence = <dnaseq>CTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGACGACGACAAAATCTACTTCTTCTTTCGTGAGACGGCGGTAGAGGCGGCGCCGGCACTGGGACGCCTGTCCGTGTCCCGCGTTGGCCAGATCTGCCGGAACGACGTGGGCGGCCAGCGCAGCCTGGTCAACAAGTGGACGACGTTCCTGAAGGCGCGGCTGGTGTGCTCGGTGCCCGGCGTCGAGGGCGACACCCACTTCGATCAGCTCCAGGATGTGTTTCTGTTGTCCTCGCGGGACCACCGGACCCCGCTGCTCTATGCCGTCTTCTCCACGTCCAGCATCTTCCAGGGCTCTGCGGTGTGCGTGTACAGCATGAACGACGTGCGCCGGGCCTTCTTGGGACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTGTCATACCAGGGTCGCGTCCCCTACCCGCGGCCAGGCATGTGCCCCAGCAAGACCTTTGGCACCTTCAGTTCCACCAAGGACTTCCCAGACGATGTCATCCAGTTTGCGCGGAACCACCCCCTCATGTACAACTCTGTCCTGCCCACTGGGGGGCGCCCTCTTTTCCTACAAGTTGGAGCCAATTACACCTTCACTCAAATTGCCGCGGACCGGGTTGCAGCCGCTGACGGACACTATGACGTCCTCTTCATTGGCACAGACGTTGGCACGGTGCTGAAGGTGATCTCGGTCCCCAAGGGCAGTAGGCCCAGCGCAGAGGGGCTGCTCCTGGAGGAGCTGCACGTGTTTGAGGACTCGGCCGCTGTCACCAGCATGCAAATTTCTTCCAAGAGGCACCAGCTGTACGTAGCCTCGCGGAGCGCGGTGGCCCAGATCGCGTTGCACCGCTGCGCTGCCCACGGCCGCGTCTGCACCGAATGCTGTCTGGCGCGTGACCCCTACTGCGCCTGGGACGGGGTCGCGTGCACGCGCTTCCAGCCCAGTGCCAAGAGGCGGTTCCGGCGGCAAGACGTAAGGAATGGCGACCCCAGCACGTTGTGCTCCGGAGACTCGTCTCGTCCCGCGCTGCTGGAACACAAGGTGTTCGGCGTGGAGGGCAGCAGCGCCTTTCTGGAGTGTGAGCCCCGCTCGCTGCAGGCGCGCGTGGAGTGGACTTTCCAGCGCGCAGGGGTGACAGCCCACACCCAGGTGCTGGCAGAGGAGCGCACCGAGCGCACCGCCCGGGGACTACTGCTGCGCAGGCTGCGGCGCCGGGACTCGGGCGTGTACTTGTGCGCCGCCGTCGAGCAGGGCTTTACGCAACCGCTGCGTCGCCTGTCGCTGCACGTGTTGAGTGCTACGCAGGCCGAACGACTGGCGCGGGCCGAGGAGGCTGCGCCCGCCGCGCCGCCGGGCCCCAAACTCTGGTACCGGGACTTTCTGCAGCTGGTGGAGCCGGGCGGAGGTGGCAGCGCGAACTCCCTGCGCATGTGCCGCCCGCAGCCTGCGCTGCAGTCACTGCCCCTGGAGTCGCGGAGAAAGGGCCGTAACCGGAGGACCCACGCCCCTGAGCCTCGCGCTGAGCGGGGGCCGCGCAGCGCAACGCACTGGTGACCAGACTGTCCCCACGCCGGGAACCAAGCAGGAGACGACAGGCGAGAGAGGAGCCAGACAGACCCTGAAAAGAAGGACGGGTTGGGGCCGGGCACATTGGGGGTCACCGGCCGATGGAGACACCAACCGACAGGCCCTGGCTGAGGGCAGCTGCGCGGGCTTATTTATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGGCGGCACAGGTCGGGCGCAGGATTCAGCCGGAGGGAAGGGACGGGGAAGCCGAGCTCCAGAGCAACGACCAGGGCCGAGGAGGTGCCTGGAGTGCCCACCCTGGGAGACAGACCCCACCTCCTTGGGTAGTGAGCAGTGAGCAGAAAGCTGTGAACAGGCTGGGCTGCTGGAGGTGGGGCGAGGCAGGCCGACTGTACTAAAGTAACGCAATAAACGCATTATCAGCCAAAGCTGGAATGGCCCCAGCAGAAAA</dnaseq>| | sequence = <dnaseq>CTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGACGACGACAAAATCTACTTCTTCTTTCGTGAGACGGCGGTAGAGGCGGCGCCGGCACTGGGACGCCTGTCCGTGTCCCGCGTTGGCCAGATCTGCCGGAACGACGTGGGCGGCCAGCGCAGCCTGGTCAACAAGTGGACGACGTTCCTGAAGGCGCGGCTGGTGTGCTCGGTGCCCGGCGTCGAGGGCGACACCCACTTCGATCAGCTCCAGGATGTGTTTCTGTTGTCCTCGCGGGACCACCGGACCCCGCTGCTCTATGCCGTCTTCTCCACGTCCAGCATCTTCCAGGGCTCTGCGGTGTGCGTGTACAGCATGAACGACGTGCGCCGGGCCTTCTTGGGACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTGTCATACCAGGGTCGCGTCCCCTACCCGCGGCCAGGCATGTGCCCCAGCAAGACCTTTGGCACCTTCAGTTCCACCAAGGACTTCCCAGACGATGTCATCCAGTTTGCGCGGAACCACCCCCTCATGTACAACTCTGTCCTGCCCACTGGGGGGCGCCCTCTTTTCCTACAAGTTGGAGCCAATTACACCTTCACTCAAATTGCCGCGGACCGGGTTGCAGCCGCTGACGGACACTATGACGTCCTCTTCATTGGCACAGACGTTGGCACGGTGCTGAAGGTGATCTCGGTCCCCAAGGGCAGTAGGCCCAGCGCAGAGGGGCTGCTCCTGGAGGAGCTGCACGTGTTTGAGGACTCGGCCGCTGTCACCAGCATGCAAATTTCTTCCAAGAGGCACCAGCTGTACGTAGCCTCGCGGAGCGCGGTGGCCCAGATCGCGTTGCACCGCTGCGCTGCCCACGGCCGCGTCTGCACCGAATGCTGTCTGGCGCGTGACCCCTACTGCGCCTGGGACGGGGTCGCGTGCACGCGCTTCCAGCCCAGTGCCAAGAGGCGGTTCCGGCGGCAAGACGTAAGGAATGGCGACCCCAGCACGTTGTGCTCCGGAGACTCGTCTCGTCCCGCGCTGCTGGAACACAAGGTGTTCGGCGTGGAGGGCAGCAGCGCCTTTCTGGAGTGTGAGCCCCGCTCGCTGCAGGCGCGCGTGGAGTGGACTTTCCAGCGCGCAGGGGTGACAGCCCACACCCAGGTGCTGGCAGAGGAGCGCACCGAGCGCACCGCCCGGGGACTACTGCTGCGCAGGCTGCGGCGCCGGGACTCGGGCGTGTACTTGTGCGCCGCCGTCGAGCAGGGCTTTACGCAACCGCTGCGTCGCCTGTCGCTGCACGTGTTGAGTGCTACGCAGGCCGAACGACTGGCGCGGGCCGAGGAGGCTGCGCCCGCCGCGCCGCCGGGCCCCAAACTCTGGTACCGGGACTTTCTGCAGCTGGTGGAGCCGGGCGGAGGTGGCAGCGCGAACTCCCTGCGCATGTGCCGCCCGCAGCCTGCGCTGCAGTCACTGCCCCTGGAGTCGCGGAGAAAGGGCCGTAACCGGAGGACCCACGCCCCTGAGCCTCGCGCTGAGCGGGGGCCGCGCAGCGCAACGCACTGGTGACCAGACTGTCCCCACGCCGGGAACCAAGCAGGAGACGACAGGCGAGAGAGGAGCCAGACAGACCCTGAAAAGAAGGACGGGTTGGGGCCGGGCACATTGGGGGTCACCGGCCGATGGAGACACCAACCGACAGGCCCTGGCTGAGGGCAGCTGCGCGGGCTTATTTATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGGCGGCACAGGTCGGGCGCAGGATTCAGCCGGAGGGAAGGGACGGGGAAGCCGAGCTCCAGAGCAACGACCAGGGCCGAGGAGGTGCCTGGAGTGCCCACCCTGGGAGACAGACCCCACCTCCTTGGGTAGTGAGCAGTGAGCAGAAAGCTGTGAACAGGCTGGGCTGCTGGAGGTGGGGCGAGGCAGGCCGACTGTACTAAAGTAACGCAATAAACGCATTATCAGCCAAAGCTGGAATGGCCCCAGCAGAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:ENSG00000012171.13]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:ENSG00000012171.13]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 16:14, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000456560.2 |
Source |
Gencode19 |
Same with |
, |
Classification |
sense |
Length |
2221 nt |
Genomic location |
chr3+:50310550..50314596 |
Exon number |
11 |
Exons |
50310550..50310874,50310966..50311077,50311190..50311259,50311347..50311488,50311794..50312013,50312274..50312365,50312443..50312484,50312733..50312890,50312991..50313046,50313136..50313275,50313733..50314596 |
Genome context |
|
Sequence |
000001 CTGATCCTTT GGATTCGGTC CGCGCAGAGC GCCAACTGGA CATGGTGCTA GAGGTTGGGT GGTCAGACAC TGTGATCCCG 000080
000081 GGTGCTGTGC CCGCACTACG GGAAGGGGAA GCAGCGCGTG GGTCTCGCAT CAGGAGGCAA GGCCAGGACC CGCTGACCCA 000160 000161 TGCCTCCTGC CGCGGTCAGA GCCCAAGTTT GTCAAGGTAT TTTGGATCCC GGAGAGCGAG AACCCAGACG ACGACAAAAT 000240 000241 CTACTTCTTC TTTCGTGAGA CGGCGGTAGA GGCGGCGCCG GCACTGGGAC GCCTGTCCGT GTCCCGCGTT GGCCAGATCT 000320 000321 GCCGGAACGA CGTGGGCGGC CAGCGCAGCC TGGTCAACAA GTGGACGACG TTCCTGAAGG CGCGGCTGGT GTGCTCGGTG 000400 000401 CCCGGCGTCG AGGGCGACAC CCACTTCGAT CAGCTCCAGG ATGTGTTTCT GTTGTCCTCG CGGGACCACC GGACCCCGCT 000480 000481 GCTCTATGCC GTCTTCTCCA CGTCCAGCAT CTTCCAGGGC TCTGCGGTGT GCGTGTACAG CATGAACGAC GTGCGCCGGG 000560 000561 CCTTCTTGGG ACCCTTTGCA CACAAGGAGG GGCCCATGCA CCAGTGGGTG TCATACCAGG GTCGCGTCCC CTACCCGCGG 000640 000641 CCAGGCATGT GCCCCAGCAA GACCTTTGGC ACCTTCAGTT CCACCAAGGA CTTCCCAGAC GATGTCATCC AGTTTGCGCG 000720 000721 GAACCACCCC CTCATGTACA ACTCTGTCCT GCCCACTGGG GGGCGCCCTC TTTTCCTACA AGTTGGAGCC AATTACACCT 000800 000801 TCACTCAAAT TGCCGCGGAC CGGGTTGCAG CCGCTGACGG ACACTATGAC GTCCTCTTCA TTGGCACAGA CGTTGGCACG 000880 000881 GTGCTGAAGG TGATCTCGGT CCCCAAGGGC AGTAGGCCCA GCGCAGAGGG GCTGCTCCTG GAGGAGCTGC ACGTGTTTGA 000960 000961 GGACTCGGCC GCTGTCACCA GCATGCAAAT TTCTTCCAAG AGGCACCAGC TGTACGTAGC CTCGCGGAGC GCGGTGGCCC 001040 001041 AGATCGCGTT GCACCGCTGC GCTGCCCACG GCCGCGTCTG CACCGAATGC TGTCTGGCGC GTGACCCCTA CTGCGCCTGG 001120 001121 GACGGGGTCG CGTGCACGCG CTTCCAGCCC AGTGCCAAGA GGCGGTTCCG GCGGCAAGAC GTAAGGAATG GCGACCCCAG 001200 001201 CACGTTGTGC TCCGGAGACT CGTCTCGTCC CGCGCTGCTG GAACACAAGG TGTTCGGCGT GGAGGGCAGC AGCGCCTTTC 001280 001281 TGGAGTGTGA GCCCCGCTCG CTGCAGGCGC GCGTGGAGTG GACTTTCCAG CGCGCAGGGG TGACAGCCCA CACCCAGGTG 001360 001361 CTGGCAGAGG AGCGCACCGA GCGCACCGCC CGGGGACTAC TGCTGCGCAG GCTGCGGCGC CGGGACTCGG GCGTGTACTT 001440 001441 GTGCGCCGCC GTCGAGCAGG GCTTTACGCA ACCGCTGCGT CGCCTGTCGC TGCACGTGTT GAGTGCTACG CAGGCCGAAC 001520 001521 GACTGGCGCG GGCCGAGGAG GCTGCGCCCG CCGCGCCGCC GGGCCCCAAA CTCTGGTACC GGGACTTTCT GCAGCTGGTG 001600 001601 GAGCCGGGCG GAGGTGGCAG CGCGAACTCC CTGCGCATGT GCCGCCCGCA GCCTGCGCTG CAGTCACTGC CCCTGGAGTC 001680 001681 GCGGAGAAAG GGCCGTAACC GGAGGACCCA CGCCCCTGAG CCTCGCGCTG AGCGGGGGCC GCGCAGCGCA ACGCACTGGT 001760 001761 GACCAGACTG TCCCCACGCC GGGAACCAAG CAGGAGACGA CAGGCGAGAG AGGAGCCAGA CAGACCCTGA AAAGAAGGAC 001840 001841 GGGTTGGGGC CGGGCACATT GGGGGTCACC GGCCGATGGA GACACCAACC GACAGGCCCT GGCTGAGGGC AGCTGCGCGG 001920 001921 GCTTATTTAT TAACAGGATA ACCCTTGAAT GTAGCAGCCC CGGGAGGGCG GCACAGGTCG GGCGCAGGAT TCAGCCGGAG 002000 002001 GGAAGGGACG GGGAAGCCGA GCTCCAGAGC AACGACCAGG GCCGAGGAGG TGCCTGGAGT GCCCACCCTG GGAGACAGAC 002080 002081 CCCACCTCCT TGGGTAGTGA GCAGTGAGCA GAAAGCTGTG AACAGGCTGG GCTGCTGGAG GTGGGGCGAG GCAGGCCGAC 002160 002161 TGTACTAAAG TAACGCAATA AACGCATTAT CAGCCAAAGC TGGAATGGCC CCAGCAGAAA A |
Predicted Small Protein
Name | ENST00000456560.2_smProtein_41:268 |
Length | 76 |
Molecular weight | 8289.2324 |
Aromaticity | 0.0533333333333 |
Instability index | 73.8733333333 |
Isoelectric point | 11.8004760742 |
Runs | 13 |
Runs residual | 0.0243971631206 |
Runs probability | 0.0486527251233 |
Amino acid sequence | MVLEVGWSDTVIPGAVPALREGEAARGSRIRRQGQDPLTHASCRGQSPSLSRYFGSRRAR TQTTTKSTSSFVRRR |
Secondary structure | LEEEELLLLLLLLLLLHHHLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLEEELLLLEEE EEEEEELLLEEEEEL |
PRMN | - |
PiMo | - |