Difference between revisions of "ENST00000456560.2"

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sequence = <dnaseq>CTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGACGACGACAAAATCTACTTCTTCTTTCGTGAGACGGCGGTAGAGGCGGCGCCGGCACTGGGACGCCTGTCCGTGTCCCGCGTTGGCCAGATCTGCCGGAACGACGTGGGCGGCCAGCGCAGCCTGGTCAACAAGTGGACGACGTTCCTGAAGGCGCGGCTGGTGTGCTCGGTGCCCGGCGTCGAGGGCGACACCCACTTCGATCAGCTCCAGGATGTGTTTCTGTTGTCCTCGCGGGACCACCGGACCCCGCTGCTCTATGCCGTCTTCTCCACGTCCAGCATCTTCCAGGGCTCTGCGGTGTGCGTGTACAGCATGAACGACGTGCGCCGGGCCTTCTTGGGACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTGTCATACCAGGGTCGCGTCCCCTACCCGCGGCCAGGCATGTGCCCCAGCAAGACCTTTGGCACCTTCAGTTCCACCAAGGACTTCCCAGACGATGTCATCCAGTTTGCGCGGAACCACCCCCTCATGTACAACTCTGTCCTGCCCACTGGGGGGCGCCCTCTTTTCCTACAAGTTGGAGCCAATTACACCTTCACTCAAATTGCCGCGGACCGGGTTGCAGCCGCTGACGGACACTATGACGTCCTCTTCATTGGCACAGACGTTGGCACGGTGCTGAAGGTGATCTCGGTCCCCAAGGGCAGTAGGCCCAGCGCAGAGGGGCTGCTCCTGGAGGAGCTGCACGTGTTTGAGGACTCGGCCGCTGTCACCAGCATGCAAATTTCTTCCAAGAGGCACCAGCTGTACGTAGCCTCGCGGAGCGCGGTGGCCCAGATCGCGTTGCACCGCTGCGCTGCCCACGGCCGCGTCTGCACCGAATGCTGTCTGGCGCGTGACCCCTACTGCGCCTGGGACGGGGTCGCGTGCACGCGCTTCCAGCCCAGTGCCAAGAGGCGGTTCCGGCGGCAAGACGTAAGGAATGGCGACCCCAGCACGTTGTGCTCCGGAGACTCGTCTCGTCCCGCGCTGCTGGAACACAAGGTGTTCGGCGTGGAGGGCAGCAGCGCCTTTCTGGAGTGTGAGCCCCGCTCGCTGCAGGCGCGCGTGGAGTGGACTTTCCAGCGCGCAGGGGTGACAGCCCACACCCAGGTGCTGGCAGAGGAGCGCACCGAGCGCACCGCCCGGGGACTACTGCTGCGCAGGCTGCGGCGCCGGGACTCGGGCGTGTACTTGTGCGCCGCCGTCGAGCAGGGCTTTACGCAACCGCTGCGTCGCCTGTCGCTGCACGTGTTGAGTGCTACGCAGGCCGAACGACTGGCGCGGGCCGAGGAGGCTGCGCCCGCCGCGCCGCCGGGCCCCAAACTCTGGTACCGGGACTTTCTGCAGCTGGTGGAGCCGGGCGGAGGTGGCAGCGCGAACTCCCTGCGCATGTGCCGCCCGCAGCCTGCGCTGCAGTCACTGCCCCTGGAGTCGCGGAGAAAGGGCCGTAACCGGAGGACCCACGCCCCTGAGCCTCGCGCTGAGCGGGGGCCGCGCAGCGCAACGCACTGGTGACCAGACTGTCCCCACGCCGGGAACCAAGCAGGAGACGACAGGCGAGAGAGGAGCCAGACAGACCCTGAAAAGAAGGACGGGTTGGGGCCGGGCACATTGGGGGTCACCGGCCGATGGAGACACCAACCGACAGGCCCTGGCTGAGGGCAGCTGCGCGGGCTTATTTATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGGCGGCACAGGTCGGGCGCAGGATTCAGCCGGAGGGAAGGGACGGGGAAGCCGAGCTCCAGAGCAACGACCAGGGCCGAGGAGGTGCCTGGAGTGCCCACCCTGGGAGACAGACCCCACCTCCTTGGGTAGTGAGCAGTGAGCAGAAAGCTGTGAACAGGCTGGGCTGCTGGAGGTGGGGCGAGGCAGGCCGACTGTACTAAAGTAACGCAATAAACGCATTATCAGCCAAAGCTGGAATGGCCCCAGCAGAAAA</dnaseq>|
 
sequence = <dnaseq>CTGATCCTTTGGATTCGGTCCGCGCAGAGCGCCAACTGGACATGGTGCTAGAGGTTGGGTGGTCAGACACTGTGATCCCGGGTGCTGTGCCCGCACTACGGGAAGGGGAAGCAGCGCGTGGGTCTCGCATCAGGAGGCAAGGCCAGGACCCGCTGACCCATGCCTCCTGCCGCGGTCAGAGCCCAAGTTTGTCAAGGTATTTTGGATCCCGGAGAGCGAGAACCCAGACGACGACAAAATCTACTTCTTCTTTCGTGAGACGGCGGTAGAGGCGGCGCCGGCACTGGGACGCCTGTCCGTGTCCCGCGTTGGCCAGATCTGCCGGAACGACGTGGGCGGCCAGCGCAGCCTGGTCAACAAGTGGACGACGTTCCTGAAGGCGCGGCTGGTGTGCTCGGTGCCCGGCGTCGAGGGCGACACCCACTTCGATCAGCTCCAGGATGTGTTTCTGTTGTCCTCGCGGGACCACCGGACCCCGCTGCTCTATGCCGTCTTCTCCACGTCCAGCATCTTCCAGGGCTCTGCGGTGTGCGTGTACAGCATGAACGACGTGCGCCGGGCCTTCTTGGGACCCTTTGCACACAAGGAGGGGCCCATGCACCAGTGGGTGTCATACCAGGGTCGCGTCCCCTACCCGCGGCCAGGCATGTGCCCCAGCAAGACCTTTGGCACCTTCAGTTCCACCAAGGACTTCCCAGACGATGTCATCCAGTTTGCGCGGAACCACCCCCTCATGTACAACTCTGTCCTGCCCACTGGGGGGCGCCCTCTTTTCCTACAAGTTGGAGCCAATTACACCTTCACTCAAATTGCCGCGGACCGGGTTGCAGCCGCTGACGGACACTATGACGTCCTCTTCATTGGCACAGACGTTGGCACGGTGCTGAAGGTGATCTCGGTCCCCAAGGGCAGTAGGCCCAGCGCAGAGGGGCTGCTCCTGGAGGAGCTGCACGTGTTTGAGGACTCGGCCGCTGTCACCAGCATGCAAATTTCTTCCAAGAGGCACCAGCTGTACGTAGCCTCGCGGAGCGCGGTGGCCCAGATCGCGTTGCACCGCTGCGCTGCCCACGGCCGCGTCTGCACCGAATGCTGTCTGGCGCGTGACCCCTACTGCGCCTGGGACGGGGTCGCGTGCACGCGCTTCCAGCCCAGTGCCAAGAGGCGGTTCCGGCGGCAAGACGTAAGGAATGGCGACCCCAGCACGTTGTGCTCCGGAGACTCGTCTCGTCCCGCGCTGCTGGAACACAAGGTGTTCGGCGTGGAGGGCAGCAGCGCCTTTCTGGAGTGTGAGCCCCGCTCGCTGCAGGCGCGCGTGGAGTGGACTTTCCAGCGCGCAGGGGTGACAGCCCACACCCAGGTGCTGGCAGAGGAGCGCACCGAGCGCACCGCCCGGGGACTACTGCTGCGCAGGCTGCGGCGCCGGGACTCGGGCGTGTACTTGTGCGCCGCCGTCGAGCAGGGCTTTACGCAACCGCTGCGTCGCCTGTCGCTGCACGTGTTGAGTGCTACGCAGGCCGAACGACTGGCGCGGGCCGAGGAGGCTGCGCCCGCCGCGCCGCCGGGCCCCAAACTCTGGTACCGGGACTTTCTGCAGCTGGTGGAGCCGGGCGGAGGTGGCAGCGCGAACTCCCTGCGCATGTGCCGCCCGCAGCCTGCGCTGCAGTCACTGCCCCTGGAGTCGCGGAGAAAGGGCCGTAACCGGAGGACCCACGCCCCTGAGCCTCGCGCTGAGCGGGGGCCGCGCAGCGCAACGCACTGGTGACCAGACTGTCCCCACGCCGGGAACCAAGCAGGAGACGACAGGCGAGAGAGGAGCCAGACAGACCCTGAAAAGAAGGACGGGTTGGGGCCGGGCACATTGGGGGTCACCGGCCGATGGAGACACCAACCGACAGGCCCTGGCTGAGGGCAGCTGCGCGGGCTTATTTATTAACAGGATAACCCTTGAATGTAGCAGCCCCGGGAGGGCGGCACAGGTCGGGCGCAGGATTCAGCCGGAGGGAAGGGACGGGGAAGCCGAGCTCCAGAGCAACGACCAGGGCCGAGGAGGTGCCTGGAGTGCCCACCCTGGGAGACAGACCCCACCTCCTTGGGTAGTGAGCAGTGAGCAGAAAGCTGTGAACAGGCTGGGCTGCTGGAGGTGGGGCGAGGCAGGCCGACTGTACTAAAGTAACGCAATAAACGCATTATCAGCCAAAGCTGGAATGGCCCCAGCAGAAAA</dnaseq>|
 
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[[Category:Sense]][[Category:ENSG00000012171.13]][[Category:Transcripts]]
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[[Category:Sense]][[Category:ENSG00000012171.13]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 16:14, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000456560.2

Source

Gencode19

Same with

,

Classification

sense

Length

2221 nt

Genomic location

chr3+:50310550..50314596

Exon number

11

Exons

50310550..50310874,50310966..50311077,50311190..50311259,50311347..50311488,50311794..50312013,50312274..50312365,50312443..50312484,50312733..50312890,50312991..50313046,50313136..50313275,50313733..50314596

Genome context

Sequence
000001 CTGATCCTTT GGATTCGGTC CGCGCAGAGC GCCAACTGGA CATGGTGCTA GAGGTTGGGT GGTCAGACAC TGTGATCCCG 000080
000081 GGTGCTGTGC CCGCACTACG GGAAGGGGAA GCAGCGCGTG GGTCTCGCAT CAGGAGGCAA GGCCAGGACC CGCTGACCCA 000160
000161 TGCCTCCTGC CGCGGTCAGA GCCCAAGTTT GTCAAGGTAT TTTGGATCCC GGAGAGCGAG AACCCAGACG ACGACAAAAT 000240
000241 CTACTTCTTC TTTCGTGAGA CGGCGGTAGA GGCGGCGCCG GCACTGGGAC GCCTGTCCGT GTCCCGCGTT GGCCAGATCT 000320
000321 GCCGGAACGA CGTGGGCGGC CAGCGCAGCC TGGTCAACAA GTGGACGACG TTCCTGAAGG CGCGGCTGGT GTGCTCGGTG 000400
000401 CCCGGCGTCG AGGGCGACAC CCACTTCGAT CAGCTCCAGG ATGTGTTTCT GTTGTCCTCG CGGGACCACC GGACCCCGCT 000480
000481 GCTCTATGCC GTCTTCTCCA CGTCCAGCAT CTTCCAGGGC TCTGCGGTGT GCGTGTACAG CATGAACGAC GTGCGCCGGG 000560
000561 CCTTCTTGGG ACCCTTTGCA CACAAGGAGG GGCCCATGCA CCAGTGGGTG TCATACCAGG GTCGCGTCCC CTACCCGCGG 000640
000641 CCAGGCATGT GCCCCAGCAA GACCTTTGGC ACCTTCAGTT CCACCAAGGA CTTCCCAGAC GATGTCATCC AGTTTGCGCG 000720
000721 GAACCACCCC CTCATGTACA ACTCTGTCCT GCCCACTGGG GGGCGCCCTC TTTTCCTACA AGTTGGAGCC AATTACACCT 000800
000801 TCACTCAAAT TGCCGCGGAC CGGGTTGCAG CCGCTGACGG ACACTATGAC GTCCTCTTCA TTGGCACAGA CGTTGGCACG 000880
000881 GTGCTGAAGG TGATCTCGGT CCCCAAGGGC AGTAGGCCCA GCGCAGAGGG GCTGCTCCTG GAGGAGCTGC ACGTGTTTGA 000960
000961 GGACTCGGCC GCTGTCACCA GCATGCAAAT TTCTTCCAAG AGGCACCAGC TGTACGTAGC CTCGCGGAGC GCGGTGGCCC 001040
001041 AGATCGCGTT GCACCGCTGC GCTGCCCACG GCCGCGTCTG CACCGAATGC TGTCTGGCGC GTGACCCCTA CTGCGCCTGG 001120
001121 GACGGGGTCG CGTGCACGCG CTTCCAGCCC AGTGCCAAGA GGCGGTTCCG GCGGCAAGAC GTAAGGAATG GCGACCCCAG 001200
001201 CACGTTGTGC TCCGGAGACT CGTCTCGTCC CGCGCTGCTG GAACACAAGG TGTTCGGCGT GGAGGGCAGC AGCGCCTTTC 001280
001281 TGGAGTGTGA GCCCCGCTCG CTGCAGGCGC GCGTGGAGTG GACTTTCCAG CGCGCAGGGG TGACAGCCCA CACCCAGGTG 001360
001361 CTGGCAGAGG AGCGCACCGA GCGCACCGCC CGGGGACTAC TGCTGCGCAG GCTGCGGCGC CGGGACTCGG GCGTGTACTT 001440
001441 GTGCGCCGCC GTCGAGCAGG GCTTTACGCA ACCGCTGCGT CGCCTGTCGC TGCACGTGTT GAGTGCTACG CAGGCCGAAC 001520
001521 GACTGGCGCG GGCCGAGGAG GCTGCGCCCG CCGCGCCGCC GGGCCCCAAA CTCTGGTACC GGGACTTTCT GCAGCTGGTG 001600
001601 GAGCCGGGCG GAGGTGGCAG CGCGAACTCC CTGCGCATGT GCCGCCCGCA GCCTGCGCTG CAGTCACTGC CCCTGGAGTC 001680
001681 GCGGAGAAAG GGCCGTAACC GGAGGACCCA CGCCCCTGAG CCTCGCGCTG AGCGGGGGCC GCGCAGCGCA ACGCACTGGT 001760
001761 GACCAGACTG TCCCCACGCC GGGAACCAAG CAGGAGACGA CAGGCGAGAG AGGAGCCAGA CAGACCCTGA AAAGAAGGAC 001840
001841 GGGTTGGGGC CGGGCACATT GGGGGTCACC GGCCGATGGA GACACCAACC GACAGGCCCT GGCTGAGGGC AGCTGCGCGG 001920
001921 GCTTATTTAT TAACAGGATA ACCCTTGAAT GTAGCAGCCC CGGGAGGGCG GCACAGGTCG GGCGCAGGAT TCAGCCGGAG 002000
002001 GGAAGGGACG GGGAAGCCGA GCTCCAGAGC AACGACCAGG GCCGAGGAGG TGCCTGGAGT GCCCACCCTG GGAGACAGAC 002080
002081 CCCACCTCCT TGGGTAGTGA GCAGTGAGCA GAAAGCTGTG AACAGGCTGG GCTGCTGGAG GTGGGGCGAG GCAGGCCGAC 002160
002161 TGTACTAAAG TAACGCAATA AACGCATTAT CAGCCAAAGC TGGAATGGCC CCAGCAGAAA A
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Predicted Small Protein

Name ENST00000456560.2_smProtein_41:268
Length 76
Molecular weight 8289.2324
Aromaticity 0.0533333333333
Instability index 73.8733333333
Isoelectric point 11.8004760742
Runs 13
Runs residual 0.0243971631206
Runs probability 0.0486527251233
Amino acid sequence MVLEVGWSDTVIPGAVPALREGEAARGSRIRRQGQDPLTHASCRGQSPSLSRYFGSRRAR
TQTTTKSTSSFVRRR
Secondary structure LEEEELLLLLLLLLLLHHHLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLEEELLLLEEE
EEEEEELLLEEEEEL
PRMN -
PiMo -