Difference between revisions of "NONHSAT005231"
| Line 42: | Line 42: | ||
sequence = <dnaseq>AGCGTCGTGGAAAGGTAGGAGCAACTATCCCTGGGGCTTGGTGATGGCTGGGAGGCCGGGTTCTCAAGAGCAAAGCAAGGATAGGGGCACCGGTAGCCTCCCGCCGCCGTCTCAACGGCCTCTGGGCCCATCCCCTGAGGGGGCGGGGCCGTCTCCTCCACCTCCCGGTATTCCCCGAGGAGGCGGCTCCTCATCCTCCGAGGGTCCTCACAGCTACTTTTTGTCCCTCGTCGATTCCCAGCTCCTCAGAAGGGGCTTCCCTCTGACACCCCTCATTCAAAGGCACCTCCCACCCCGCACCTCAGCCTTGGCGGAGAGGACTCACAGGTACCGATTCTCTAGGCTGCCGCCCCCAACCCCATTTCGTACCCCCGGAAGGCCAAACATCCCTCCCTACACCTGTCCCTGCTCGCCAGGGTGGGACTGGAGCTGCTTTCCTCCGTAAGATAAAATTGGTGTTTCCCAAAAAGGAGGGATGGGGCGAAGCAAAAATCAAAGACCGACCTAGACAGCCAGCTTTACGGAGGAAGCGGCTTCTCCCACTTAAGTTCTTCCCATCCCCCATTCTCTGATGCTCAGTCTTCCTCCCGCAGCCCCTCGCATCCTCTGGCCTCTTGTGAGGAGTCGAGAGCTCTCCTGTTTTGGGACTGTTTTGGACTGTGAAAGAGGGAGAACTAGGACCTCCTCTCCTTCACCCTTTGTACCTTCCTTCTACTTTCTGTTCCTTCTGGGAGCACCCAGCCTCTAAGGGTTTCTTAGGTTTGAATTGCGTTTCATTTTTCCTTTTCCACCCTATTTCCTCCCTGAGAACTTGATGAAAAGCCATCTTATATTTCACAGTGAGGTGGGTGTGTTGGATATCTGCAGAGCTGGCTTTGTGTGGGCAGGAATGCAGTATATGTTGCTTGACAGTCAATGAATAACACCATGTTTTCAAATGAAACAGTATACATAAGTAAATAAGTAGCAGTGGATTAGGAATGAGTATATCCCAGTCTAGGGTGGGCTGGTCCATTGCTCAGGGAGACTGCAGTTAACCTTGAAGGTATACTGCAGGTTGAAACAAAAGACAGGAAGTGTTTGAAGAAAATTCAGGGTCAGTCATCTAGGTTTATGATTAATCTAGTCCTATGTCCTTTGGTAACTCTCTAACCCCTTTTTTATAGTGTCCTCCCCGCCCCCAGGAAACATTCATGTATATTTTGATTGGTTTTACGATCATCTATCAAAATTTAGAGGATGAAAAGTAAGAACAATTTTTAAATCTCAGAGATAAGAGTAAATAAAGGCAAGGTATTCTAGCTATTCATGTTTACCAAAAAGTGCCTCTTCTAGTGTGCTCCTAAAGGTTTTGTCAAGTGGTCTTCATTTCAGCAGGTGCAAAGTGTTGATTTTGACCTCATGTTAATGTCGTTGAATCCCCAGTAATCATCTATTGCTAGCGCTTTTATATATTAAAATTTACCATGTTTTTAGCATAGTTTCTTTTGCTTCCAATCTCAAGTCTACCTCCCCTCTGTCAGCTATAGCCAAAGCTGATGGCAATAAAATGCAAGGAGTTGGAATCACGGAGGGTGATTGTAATGACTGTTGTCTTTTACCTTCTTGATTAGACTTTCTGAAGGTAGACTTCCTAAAGATAATTACTTTTGAATAGTTAGGTTTGAAGTTTTCAGAGCCACTCGGTGCTCACAGGTCTTCTCAGTGATTGTTTCCAAATCTCCAGTAAGAAAGTACAAAGAAGAAACTGGAGGGTGTCTCTAGCAAACGCAATGTGTGCTGCAATAGAAGGGTAAGACGTGAGCTCCCAGCAATAACAGCAGAAAAAACTAAAAGCAGAACAGAAAATCCCAAAAAGATAAGTTGTATTATATCAACAGAGAACAGAAAATAAACTAAGGTAAGAGACTAAGCAAACCAAAGTTGTGATTGCCGAGGTTTAATAGGAAAAAGCAAATAATATTCTTTTATTATTTAGCACAGTAAGCAAGATCTGTTTGTTACACTTTTGGGTCTTGAAAATCTTTCCTTTAACCTTTTCAACACCTGTTTGGTCATGCTAGGTGAAGAAAAGCATAGTATGCAGAGGATAGATGTCTGATCTCTCTCCTTGAATTATAAATTCTTTGAGGGCAGATAGTAGTATTTTTTGTTTTTCATCTTTATATCTTTCACAGTTCCTAGTATATAGTATGACTTCATGAGTGTTTGTTTAACTTAGTTTGAGGCTGTCACCTTAGGGTAGACTGAAAGGCAATGTACTGATTAGATTTGGCACAATTTGTTAGTATAAACGGCCTACTTGTTGTCTTCATTTAACTTGATTTTCCCCATCTTCTGTCTTATGAAATTCCAGTGTCTTAAGTGACTAAAATTTTGAATTTCTTATAAAGAAATATCTGTGAGGCAGGGTGTGGTGGCTCATCCCTGTAATCCTTGCTACTTGGGAGGCTGAGGCAGGAGGCTTGCTTGAGCCCAGGTGTTTGAGGTTACAGTGAGCTATGATCATGCCACTGCACTCTCCAGCCTGGGCAGCAGAAAGAGACCCTGTCTCTTAAC</dnaseq>| | sequence = <dnaseq>AGCGTCGTGGAAAGGTAGGAGCAACTATCCCTGGGGCTTGGTGATGGCTGGGAGGCCGGGTTCTCAAGAGCAAAGCAAGGATAGGGGCACCGGTAGCCTCCCGCCGCCGTCTCAACGGCCTCTGGGCCCATCCCCTGAGGGGGCGGGGCCGTCTCCTCCACCTCCCGGTATTCCCCGAGGAGGCGGCTCCTCATCCTCCGAGGGTCCTCACAGCTACTTTTTGTCCCTCGTCGATTCCCAGCTCCTCAGAAGGGGCTTCCCTCTGACACCCCTCATTCAAAGGCACCTCCCACCCCGCACCTCAGCCTTGGCGGAGAGGACTCACAGGTACCGATTCTCTAGGCTGCCGCCCCCAACCCCATTTCGTACCCCCGGAAGGCCAAACATCCCTCCCTACACCTGTCCCTGCTCGCCAGGGTGGGACTGGAGCTGCTTTCCTCCGTAAGATAAAATTGGTGTTTCCCAAAAAGGAGGGATGGGGCGAAGCAAAAATCAAAGACCGACCTAGACAGCCAGCTTTACGGAGGAAGCGGCTTCTCCCACTTAAGTTCTTCCCATCCCCCATTCTCTGATGCTCAGTCTTCCTCCCGCAGCCCCTCGCATCCTCTGGCCTCTTGTGAGGAGTCGAGAGCTCTCCTGTTTTGGGACTGTTTTGGACTGTGAAAGAGGGAGAACTAGGACCTCCTCTCCTTCACCCTTTGTACCTTCCTTCTACTTTCTGTTCCTTCTGGGAGCACCCAGCCTCTAAGGGTTTCTTAGGTTTGAATTGCGTTTCATTTTTCCTTTTCCACCCTATTTCCTCCCTGAGAACTTGATGAAAAGCCATCTTATATTTCACAGTGAGGTGGGTGTGTTGGATATCTGCAGAGCTGGCTTTGTGTGGGCAGGAATGCAGTATATGTTGCTTGACAGTCAATGAATAACACCATGTTTTCAAATGAAACAGTATACATAAGTAAATAAGTAGCAGTGGATTAGGAATGAGTATATCCCAGTCTAGGGTGGGCTGGTCCATTGCTCAGGGAGACTGCAGTTAACCTTGAAGGTATACTGCAGGTTGAAACAAAAGACAGGAAGTGTTTGAAGAAAATTCAGGGTCAGTCATCTAGGTTTATGATTAATCTAGTCCTATGTCCTTTGGTAACTCTCTAACCCCTTTTTTATAGTGTCCTCCCCGCCCCCAGGAAACATTCATGTATATTTTGATTGGTTTTACGATCATCTATCAAAATTTAGAGGATGAAAAGTAAGAACAATTTTTAAATCTCAGAGATAAGAGTAAATAAAGGCAAGGTATTCTAGCTATTCATGTTTACCAAAAAGTGCCTCTTCTAGTGTGCTCCTAAAGGTTTTGTCAAGTGGTCTTCATTTCAGCAGGTGCAAAGTGTTGATTTTGACCTCATGTTAATGTCGTTGAATCCCCAGTAATCATCTATTGCTAGCGCTTTTATATATTAAAATTTACCATGTTTTTAGCATAGTTTCTTTTGCTTCCAATCTCAAGTCTACCTCCCCTCTGTCAGCTATAGCCAAAGCTGATGGCAATAAAATGCAAGGAGTTGGAATCACGGAGGGTGATTGTAATGACTGTTGTCTTTTACCTTCTTGATTAGACTTTCTGAAGGTAGACTTCCTAAAGATAATTACTTTTGAATAGTTAGGTTTGAAGTTTTCAGAGCCACTCGGTGCTCACAGGTCTTCTCAGTGATTGTTTCCAAATCTCCAGTAAGAAAGTACAAAGAAGAAACTGGAGGGTGTCTCTAGCAAACGCAATGTGTGCTGCAATAGAAGGGTAAGACGTGAGCTCCCAGCAATAACAGCAGAAAAAACTAAAAGCAGAACAGAAAATCCCAAAAAGATAAGTTGTATTATATCAACAGAGAACAGAAAATAAACTAAGGTAAGAGACTAAGCAAACCAAAGTTGTGATTGCCGAGGTTTAATAGGAAAAAGCAAATAATATTCTTTTATTATTTAGCACAGTAAGCAAGATCTGTTTGTTACACTTTTGGGTCTTGAAAATCTTTCCTTTAACCTTTTCAACACCTGTTTGGTCATGCTAGGTGAAGAAAAGCATAGTATGCAGAGGATAGATGTCTGATCTCTCTCCTTGAATTATAAATTCTTTGAGGGCAGATAGTAGTATTTTTTGTTTTTCATCTTTATATCTTTCACAGTTCCTAGTATATAGTATGACTTCATGAGTGTTTGTTTAACTTAGTTTGAGGCTGTCACCTTAGGGTAGACTGAAAGGCAATGTACTGATTAGATTTGGCACAATTTGTTAGTATAAACGGCCTACTTGTTGTCTTCATTTAACTTGATTTTCCCCATCTTCTGTCTTATGAAATTCCAGTGTCTTAAGTGACTAAAATTTTGAATTTCTTATAAAGAAATATCTGTGAGGCAGGGTGTGGTGGCTCATCCCTGTAATCCTTGCTACTTGGGAGGCTGAGGCAGGAGGCTTGCTTGAGCCCAGGTGTTTGAGGTTACAGTGAGCTATGATCATGCCACTGCACTCTCCAGCCTGGGCAGCAGAAAGAGACCCTGTCTCTTAAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG002433]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG002433]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 19:35, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT005231 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
2559 nt |
| Genomic location |
chr1+:112938881..112941439 |
| Exon number |
1 |
| Exons |
112938881..112941439 |
| Genome context |
|
| Sequence |
000001 AGCGTCGTGG AAAGGTAGGA GCAACTATCC CTGGGGCTTG GTGATGGCTG GGAGGCCGGG TTCTCAAGAG CAAAGCAAGG 000080
000081 ATAGGGGCAC CGGTAGCCTC CCGCCGCCGT CTCAACGGCC TCTGGGCCCA TCCCCTGAGG GGGCGGGGCC GTCTCCTCCA 000160 000161 CCTCCCGGTA TTCCCCGAGG AGGCGGCTCC TCATCCTCCG AGGGTCCTCA CAGCTACTTT TTGTCCCTCG TCGATTCCCA 000240 000241 GCTCCTCAGA AGGGGCTTCC CTCTGACACC CCTCATTCAA AGGCACCTCC CACCCCGCAC CTCAGCCTTG GCGGAGAGGA 000320 000321 CTCACAGGTA CCGATTCTCT AGGCTGCCGC CCCCAACCCC ATTTCGTACC CCCGGAAGGC CAAACATCCC TCCCTACACC 000400 000401 TGTCCCTGCT CGCCAGGGTG GGACTGGAGC TGCTTTCCTC CGTAAGATAA AATTGGTGTT TCCCAAAAAG GAGGGATGGG 000480 000481 GCGAAGCAAA AATCAAAGAC CGACCTAGAC AGCCAGCTTT ACGGAGGAAG CGGCTTCTCC CACTTAAGTT CTTCCCATCC 000560 000561 CCCATTCTCT GATGCTCAGT CTTCCTCCCG CAGCCCCTCG CATCCTCTGG CCTCTTGTGA GGAGTCGAGA GCTCTCCTGT 000640 000641 TTTGGGACTG TTTTGGACTG TGAAAGAGGG AGAACTAGGA CCTCCTCTCC TTCACCCTTT GTACCTTCCT TCTACTTTCT 000720 000721 GTTCCTTCTG GGAGCACCCA GCCTCTAAGG GTTTCTTAGG TTTGAATTGC GTTTCATTTT TCCTTTTCCA CCCTATTTCC 000800 000801 TCCCTGAGAA CTTGATGAAA AGCCATCTTA TATTTCACAG TGAGGTGGGT GTGTTGGATA TCTGCAGAGC TGGCTTTGTG 000880 000881 TGGGCAGGAA TGCAGTATAT GTTGCTTGAC AGTCAATGAA TAACACCATG TTTTCAAATG AAACAGTATA CATAAGTAAA 000960 000961 TAAGTAGCAG TGGATTAGGA ATGAGTATAT CCCAGTCTAG GGTGGGCTGG TCCATTGCTC AGGGAGACTG CAGTTAACCT 001040 001041 TGAAGGTATA CTGCAGGTTG AAACAAAAGA CAGGAAGTGT TTGAAGAAAA TTCAGGGTCA GTCATCTAGG TTTATGATTA 001120 001121 ATCTAGTCCT ATGTCCTTTG GTAACTCTCT AACCCCTTTT TTATAGTGTC CTCCCCGCCC CCAGGAAACA TTCATGTATA 001200 001201 TTTTGATTGG TTTTACGATC ATCTATCAAA ATTTAGAGGA TGAAAAGTAA GAACAATTTT TAAATCTCAG AGATAAGAGT 001280 001281 AAATAAAGGC AAGGTATTCT AGCTATTCAT GTTTACCAAA AAGTGCCTCT TCTAGTGTGC TCCTAAAGGT TTTGTCAAGT 001360 001361 GGTCTTCATT TCAGCAGGTG CAAAGTGTTG ATTTTGACCT CATGTTAATG TCGTTGAATC CCCAGTAATC ATCTATTGCT 001440 001441 AGCGCTTTTA TATATTAAAA TTTACCATGT TTTTAGCATA GTTTCTTTTG CTTCCAATCT CAAGTCTACC TCCCCTCTGT 001520 001521 CAGCTATAGC CAAAGCTGAT GGCAATAAAA TGCAAGGAGT TGGAATCACG GAGGGTGATT GTAATGACTG TTGTCTTTTA 001600 001601 CCTTCTTGAT TAGACTTTCT GAAGGTAGAC TTCCTAAAGA TAATTACTTT TGAATAGTTA GGTTTGAAGT TTTCAGAGCC 001680 001681 ACTCGGTGCT CACAGGTCTT CTCAGTGATT GTTTCCAAAT CTCCAGTAAG AAAGTACAAA GAAGAAACTG GAGGGTGTCT 001760 001761 CTAGCAAACG CAATGTGTGC TGCAATAGAA GGGTAAGACG TGAGCTCCCA GCAATAACAG CAGAAAAAAC TAAAAGCAGA 001840 001841 ACAGAAAATC CCAAAAAGAT AAGTTGTATT ATATCAACAG AGAACAGAAA ATAAACTAAG GTAAGAGACT AAGCAAACCA 001920 001921 AAGTTGTGAT TGCCGAGGTT TAATAGGAAA AAGCAAATAA TATTCTTTTA TTATTTAGCA CAGTAAGCAA GATCTGTTTG 002000 002001 TTACACTTTT GGGTCTTGAA AATCTTTCCT TTAACCTTTT CAACACCTGT TTGGTCATGC TAGGTGAAGA AAAGCATAGT 002080 002081 ATGCAGAGGA TAGATGTCTG ATCTCTCTCC TTGAATTATA AATTCTTTGA GGGCAGATAG TAGTATTTTT TGTTTTTCAT 002160 002161 CTTTATATCT TTCACAGTTC CTAGTATATA GTATGACTTC ATGAGTGTTT GTTTAACTTA GTTTGAGGCT GTCACCTTAG 002240 002241 GGTAGACTGA AAGGCAATGT ACTGATTAGA TTTGGCACAA TTTGTTAGTA TAAACGGCCT ACTTGTTGTC TTCATTTAAC 002320 002321 TTGATTTTCC CCATCTTCTG TCTTATGAAA TTCCAGTGTC TTAAGTGACT AAAATTTTGA ATTTCTTATA AAGAAATATC 002400 002401 TGTGAGGCAG GGTGTGGTGG CTCATCCCTG TAATCCTTGC TACTTGGGAG GCTGAGGCAG GAGGCTTGCT TGAGCCCAGG 002480 002481 TGTTTGAGGT TACAGTGAGC TATGATCATG CCACTGCACT CTCCAGCCTG GGCAGCAGAA AGAGACCCTG TCTCTTAAC |
Predicted Small Protein
| Name | NONHSAT005231_smProtein_1538:1612 |
| Length | 25 |
| Molecular weight | 2857.4997 |
| Aromaticity | 0.0833333333333 |
| Instability index | 59.9504166667 |
| Isoelectric point | 7.93548583984 |
| Runs | 6 |
| Runs residual | 0.014880952381 |
| Runs probability | 0.0129394099982 |
| Amino acid sequence | MAIKCKELESRRVIVMTVVFYLLD |
| Secondary structure | LLEEEEHHHLLLEEEEEEEEEELL |
| PRMN | - |
| PiMo | - |
