Difference between revisions of "NONHSAT053005"
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sequence = <dnaseq>TGTGTGTGTATTCTGATCCTGGATTTGTCAGATGGAAGTACATTTGGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCTGATCCTGGATTTGTCAGATGGAAGTACAGCCGGAACTATAGGTGGGAGCAAAGAATTAGCCTTTCCGCTGCCTACCTCTTTTTTCCTGAAACTCCACTGGCAGTCAGCTCCTGCTAGCAGCTCCAGGCCCTCTCCTACAGGAAGACTTCCTGGATTAATCTGCTAATCTTCAGCTCATCCACCTGTTTAATAGGCAAAACCTACAGAACTAGTCCACACTGAGTGGACCTCTGGGGCTCCCAGCTGCCGATTGACCTGAACCCCAGAGTGAACTCGTGTTGCTTTGTGGCTTCAGGAAACCTTGGAACATCTCTGTGCTGTTTTTTCATTTGTGCTCAATCATTCCTGAGGCCTCCTCCTCCTGCTGCAATTTGACAAGACTTGACCAAATCATTAACTCCCAGTTAATGGGATAAAATGAGTTTGAATCTGGGATTCTGGTCATTAACCCCATGTCACCATCTGCTCCAGCAGTTTGATGGCAGGGCTAGGTGAATTCTAATCACCCAACACTTGTTAAACTGCTGATTCCTGCTTCCCCACCTCTGCTGACTCAGCATCTCTGGGGTGGGGCCTGCAAAGGCTCTCTTCCTTGACGGGGTTATTGAGGGCAGCTCTAGGAACCCACCCAGGACCAGACCTGATGAGGAGTTCCTCCTATGCATCAGGTATGCTGGGTCGGTTTGCGGAGTTTCATAACTTGCATTTTCCTCTGCCTGGAGAGTTCCTTGCAGCTGGCTTCTTCTGTGTCACGGCCCCACAGAGATCTTGGCTGGTCTCCCTATCTCCACCCTCCACCATGCTCACTATTCCATTACAAGTTTCCTTTTCTACCCAGTACTAATCATTTTCTGCAATTCATCTCATTTCCTTGTGAACTATCTGTTGGTCCTACCAGAATGTAAGTCTCCACCTGGGGGCAGAGACCCTGCCTGGCTTGTTAGAAGCCATATCCCCAGGATTGAAGCATATGAGAGATGCTCAGAAATACAAGAATTCATGAACAA</dnaseq>| | sequence = <dnaseq>TGTGTGTGTATTCTGATCCTGGATTTGTCAGATGGAAGTACATTTGGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCTGATCCTGGATTTGTCAGATGGAAGTACAGCCGGAACTATAGGTGGGAGCAAAGAATTAGCCTTTCCGCTGCCTACCTCTTTTTTCCTGAAACTCCACTGGCAGTCAGCTCCTGCTAGCAGCTCCAGGCCCTCTCCTACAGGAAGACTTCCTGGATTAATCTGCTAATCTTCAGCTCATCCACCTGTTTAATAGGCAAAACCTACAGAACTAGTCCACACTGAGTGGACCTCTGGGGCTCCCAGCTGCCGATTGACCTGAACCCCAGAGTGAACTCGTGTTGCTTTGTGGCTTCAGGAAACCTTGGAACATCTCTGTGCTGTTTTTTCATTTGTGCTCAATCATTCCTGAGGCCTCCTCCTCCTGCTGCAATTTGACAAGACTTGACCAAATCATTAACTCCCAGTTAATGGGATAAAATGAGTTTGAATCTGGGATTCTGGTCATTAACCCCATGTCACCATCTGCTCCAGCAGTTTGATGGCAGGGCTAGGTGAATTCTAATCACCCAACACTTGTTAAACTGCTGATTCCTGCTTCCCCACCTCTGCTGACTCAGCATCTCTGGGGTGGGGCCTGCAAAGGCTCTCTTCCTTGACGGGGTTATTGAGGGCAGCTCTAGGAACCCACCCAGGACCAGACCTGATGAGGAGTTCCTCCTATGCATCAGGTATGCTGGGTCGGTTTGCGGAGTTTCATAACTTGCATTTTCCTCTGCCTGGAGAGTTCCTTGCAGCTGGCTTCTTCTGTGTCACGGCCCCACAGAGATCTTGGCTGGTCTCCCTATCTCCACCCTCCACCATGCTCACTATTCCATTACAAGTTTCCTTTTCTACCCAGTACTAATCATTTTCTGCAATTCATCTCATTTCCTTGTGAACTATCTGTTGGTCCTACCAGAATGTAAGTCTCCACCTGGGGGCAGAGACCCTGCCTGGCTTGTTAGAAGCCATATCCCCAGGATTGAAGCATATGAGAGATGCTCAGAAATACAAGAATTCATGAACAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG021513]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG021513]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:14, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT053005 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1098 nt |
| Genomic location |
chr17+:32484929..32489257 |
| Exon number |
3 |
| Exons |
32484929..32485139,32486062..32486134,32488444..32489257 |
| Genome context |
|
| Sequence |
000001 TGTGTGTGTA TTCTGATCCT GGATTTGTCA GATGGAAGTA CATTTGGGCA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT 000080
000081 GTGTGTATTC TGATCCTGGA TTTGTCAGAT GGAAGTACAG CCGGAACTAT AGGTGGGAGC AAAGAATTAG CCTTTCCGCT 000160 000161 GCCTACCTCT TTTTTCCTGA AACTCCACTG GCAGTCAGCT CCTGCTAGCA GCTCCAGGCC CTCTCCTACA GGAAGACTTC 000240 000241 CTGGATTAAT CTGCTAATCT TCAGCTCATC CACCTGTTTA ATAGGCAAAA CCTACAGAAC TAGTCCACAC TGAGTGGACC 000320 000321 TCTGGGGCTC CCAGCTGCCG ATTGACCTGA ACCCCAGAGT GAACTCGTGT TGCTTTGTGG CTTCAGGAAA CCTTGGAACA 000400 000401 TCTCTGTGCT GTTTTTTCAT TTGTGCTCAA TCATTCCTGA GGCCTCCTCC TCCTGCTGCA ATTTGACAAG ACTTGACCAA 000480 000481 ATCATTAACT CCCAGTTAAT GGGATAAAAT GAGTTTGAAT CTGGGATTCT GGTCATTAAC CCCATGTCAC CATCTGCTCC 000560 000561 AGCAGTTTGA TGGCAGGGCT AGGTGAATTC TAATCACCCA ACACTTGTTA AACTGCTGAT TCCTGCTTCC CCACCTCTGC 000640 000641 TGACTCAGCA TCTCTGGGGT GGGGCCTGCA AAGGCTCTCT TCCTTGACGG GGTTATTGAG GGCAGCTCTA GGAACCCACC 000720 000721 CAGGACCAGA CCTGATGAGG AGTTCCTCCT ATGCATCAGG TATGCTGGGT CGGTTTGCGG AGTTTCATAA CTTGCATTTT 000800 000801 CCTCTGCCTG GAGAGTTCCT TGCAGCTGGC TTCTTCTGTG TCACGGCCCC ACAGAGATCT TGGCTGGTCT CCCTATCTCC 000880 000881 ACCCTCCACC ATGCTCACTA TTCCATTACA AGTTTCCTTT TCTACCCAGT ACTAATCATT TTCTGCAATT CATCTCATTT 000960 000961 CCTTGTGAAC TATCTGTTGG TCCTACCAGA ATGTAAGTCT CCACCTGGGG GCAGAGACCC TGCCTGGCTT GTTAGAAGCC 001040 001041 ATATCCCCAG GATTGAAGCA TATGAGAGAT GCTCAGAAAT ACAAGAATTC ATGAACAA |
Predicted Small Protein
| Name | NONHSAT053005_smProtein_734:934 |
| Length | 67 |
| Molecular weight | 7314.3589 |
| Aromaticity | 0.151515151515 |
| Instability index | 57.003030303 |
| Isoelectric point | 7.99871826172 |
| Runs | 11 |
| Runs residual | 0.0160587915079 |
| Runs probability | 0.0582775288659 |
| Amino acid sequence | MRSSSYASGMLGRFAEFHNLHFPLPGEFLAAGFFCVTAPQRSWLVSLSPPSTMLTIPLQV SFSTQY |
| Secondary structure | LLLLHHHHHHHHHHHHHHHHLLLLLHHHHHLLEEEELLLLLEEEEEELLLLLEEEEEEEE EEEEEL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooo oooooo |
