Difference between revisions of "NONHSAT075819"

Latest revision as of 23:40, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	NONHSAT075819
Source	NONCODE4.0
Same with	,
Classification	antisense
Length	1955 nt
Genomic location	chr2+:179641653..179644690
Exon number	2
Exons	179641653..179643482,179644565..179644690
Genome context
Sequence	000001 ATTTACTTTG CATCTTGTAG TGTCTCTGCC AGCTTTATTA ATAGCAGTCG CAGTATACCA GGCAGAATCT TGGCTGACAG 000080 000081 TGGAATCGAT TTTAAGGGCA GCTTCTCCCT TGGTTCCTTC AATTCTATAA AAAGTTGGGG GAGGGAATAA TCAATATAGT 000160 000161 GGTATAGCTT CCCTGGTTAT TGGATTTGTA TAATGAGCTT AGCTTTATTA TTTCCATACT TACCTGATTT TGGGATATTT 000240 000241 ATGAGGCACA ATGATGTCAC TGTTTTTCAA CCATACAATG TCAGGGTTGG GGTTACCCGT AGCTCTGACT TTCATTTCAA 000320 000321 GTCGGGAACC TTCCTTTATA TTGACATTTT TCAGTTTTTC TACAAACATC GGTTTTACCT GATGTTCCAC AGCTGAAAGA 000400 000401 GAAAGGTCAT GATTTAGAGG GAGTAAGGCT GAAATACCTG TTTATAACCC AAGTGATAAG AAAATTCATT TATTTTTATT 000480 000481 TTATCTCATT TTACCTTCCA CAGTTAAAAT CACTGAAATT GAAGATCTGC CTGCCCTGTT TTGGGCAACC ACAGTCCATT 000560 000561 CCCCAGAATC ACTGGGTGTG GCAGGGACAA TAATTAGTGA TTGAGTACCA TCTTCTTTAA TGACTACTTT ATGGGTATAG 000640 000641 TCATTGACAA TTTGCTGGCC TGTGAAAATA TGTTTAAAAG AAAGTAGATT TTAAAATAGT TTTTAAAAAT TGTTAGATGC 000720 000721 ATACATAAGC TTGTTTTTGT GTTTTTATGA TTCATGAGCA AAAACTTATC ACACTTACCA TCATGAAACC AGAACGTCTC 000800 000801 TGGCATAGGT CTACCAACAA CCTTTAAGTC AAATCTGGCA GTTTGCCCTT CTAAACATTT GAAAGAAACA GGTTTTAACA 000880 000881 CAAAGACTGG TTTATATAGT CTCTCAAGTT GTGACTCATC TGTCTCCTCC AGCCTACGTC CAGGGGACAT TCTTGCAGGG 000960 000961 GACATCCGTG CAGGAGACAT CCTTGCAGGT GACATCCGTG CAGGAGACAT GCGTATAGGA GACCTGCTCA CTGAACGTGG 001040 001041 AGAGAGAGAT CTGCAAAACA AAGACACACA ATACTTTCGT GAGGCATAAA GAAAACTCAG CAAAACAAAC TTCATTTTGT 001120 001121 CTTATTCATT ATTCATGTTA TTTTAGAATT TACTTCTTGC ACGTATTAGA AGGCACCTCA AACTCATTCA GATCTAAAAT 001200 001201 AGAATATATT ATTGTTGCCC CCACAACTAT GTTTTTCCTA TATTCTCAAT TTTAGCTGGT AGTCATTCAG TACATCCAGG 001280 001281 TACCCAGGCT CAAAAATCTT GGAATAATCC TCAATACTCT CTTTTCCTTA CCACTTGGAT TTAATCAGTC ACTAGACTTT 001360 001361 TTTGATTTAA CTACTAAAAC ATCCTAATAA ATGTTGGTTG GATAAGTAAA CCAATGAATA CATTTATGGA AAAATAAAAA 001440 001441 ATACACATTC TTTATCTCAG AGGAGGAAAA CATAGAAATG AATTTGGAAA CAAAACAAAG CAAAACAAGA CTCCATCTAC 001520 001521 ACATTGCAGC CAGACTGACT TGGAGTTTGA ATGCTGGCAC CACCGCTTAC AGGCTGGATG AATTAAGACA ATTTTCATAG 001600 001601 ATTCCCAGGG CCTCAGTGTT CCTATTTCCA AACCAATAAT AGTCATCTTT TTATTGCAGG GCTGTTGTAT AAATTTACAT 001680 001681 ATGTAAAAAT CAGGTGTCAA ATAAGAGCTA TTGTGATATT AGCTATAGCA CTAGGAAAAT AAACAGTATG TTACACTGAT 001760 001761 GAAAATTCTT TGCTCATCTT ACACAGGGGC AAGAAATAAA AACTTCTGGC AATTGTTGGT GTTGCCAATG GTGCAACATA 001840 001841 CCATGAAGAT TAAGGAAACT TAGCAACAGT GAACTTGGAC CTTCTAATAG CTGTCTAACC CCGAGCTCAT CACTTGAAAA 001920 001921 TGAAAATATC AAATAAAAAA AGGAAAGTAT AATTT

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Predicted Small Protein

Name	`NONHSAT075819_smProtein_746:826`
Length	`27`
Molecular weight	`3203.7816`
Aromaticity	`0.0384615384615`
Instability index	`51.6230769231`
Isoelectric point	`9.98443603516`
Runs	`5`
Runs residual	`0.0169946332737`
Runs probability	`0.0383854442678`
Amino acid sequence	`MIHEQKLITLTIMKP`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>ATTTACTTTGCATCTTGTAGTGTCTCTGCCAGCTTTATTAATAGCAGTCGCAGTATACCAGGCAGAATCTTGGCTGACAGTGGAATCGATTTTAAGGGCAGCTTCTCCCTTGGTTCCTTCAATTCTATAAAAAGTTGGGGGAGGGAATAATCAATATAGTGGTATAGCTTCCCTGGTTATTGGATTTGTATAATGAGCTTAGCTTTATTATTTCCATACTTACCTGATTTTGGGATATTTATGAGGCACAATGATGTCACTGTTTTTCAACCATACAATGTCAGGGTTGGGGTTACCCGTAGCTCTGACTTTCATTTCAAGTCGGGAACCTTCCTTTATATTGACATTTTTCAGTTTTTCTACAAACATCGGTTTTACCTGATGTTCCACAGCTGAAAGAGAAAGGTCATGATTTAGAGGGAGTAAGGCTGAAATACCTGTTTATAACCCAAGTGATAAGAAAATTCATTTATTTTTATTTTATCTCATTTTACCTTCCACAGTTAAAATCACTGAAATTGAAGATCTGCCTGCCCTGTTTTGGGCAACCACAGTCCATTCCCCAGAATCACTGGGTGTGGCAGGGACAATAATTAGTGATTGAGTACCATCTTCTTTAATGACTACTTTATGGGTATAGTCATTGACAATTTGCTGGCCTGTGAAAATATGTTTAAAAGAAAGTAGATTTTAAAATAGTTTTTAAAAATTGTTAGATGCATACATAAGCTTGTTTTTGTGTTTTTATGATTCATGAGCAAAAACTTATCACACTTACCATCATGAAACCAGAACGTCTCTGGCATAGGTCTACCAACAACCTTTAAGTCAAATCTGGCAGTTTGCCCTTCTAAACATTTGAAAGAAACAGGTTTTAACACAAAGACTGGTTTATATAGTCTCTCAAGTTGTGACTCATCTGTCTCCTCCAGCCTACGTCCAGGGGACATTCTTGCAGGGGACATCCGTGCAGGAGACATCCTTGCAGGTGACATCCGTGCAGGAGACATGCGTATAGGAGACCTGCTCACTGAACGTGGAGAGAGAGATCTGCAAAACAAAGACACACAATACTTTCGTGAGGCATAAAGAAAACTCAGCAAAACAAACTTCATTTTGTCTTATTCATTATTCATGTTATTTTAGAATTTACTTCTTGCACGTATTAGAAGGCACCTCAAACTCATTCAGATCTAAAATAGAATATATTATTGTTGCCCCCACAACTATGTTTTTCCTATATTCTCAATTTTAGCTGGTAGTCATTCAGTACATCCAGGTACCCAGGCTCAAAAATCTTGGAATAATCCTCAATACTCTCTTTTCCTTACCACTTGGATTTAATCAGTCACTAGACTTTTTTGATTTAACTACTAAAACATCCTAATAAATGTTGGTTGGATAAGTAAACCAATGAATACATTTATGGAAAAATAAAAAATACACATTCTTTATCTCAGAGGAGGAAAACATAGAAATGAATTTGGAAACAAAACAAAGCAAAACAAGACTCCATCTACACATTGCAGCCAGACTGACTTGGAGTTTGAATGCTGGCACCACCGCTTACAGGCTGGATGAATTAAGACAATTTTCATAGATTCCCAGGGCCTCAGTGTTCCTATTTCCAAACCAATAATAGTCATCTTTTTATTGCAGGGCTGTTGTATAAATTTACATATGTAAAAATCAGGTGTCAAATAAGAGCTATTGTGATATTAGCTATAGCACTAGGAAAATAAACAGTATGTTACACTGATGAAAATTCTTTGCTCATCTTACACAGGGGCAAGAAATAAAAACTTCTGGCAATTGTTGGTGTTGCCAATGGTGCAACATACCATGAAGATTAAGGAAACTTAGCAACAGTGAACTTGGACCTTCTAATAGCTGTCTAACCCCGAGCTCATCACTTGAAAATGAAAATATCAAATAAAAAAAGGAAAGTATAATTT</dnaseq>|
 }}
-[[Category:Antisense]][[Category:NONHSAG029967]][[Category:Transcripts]]
+[[Category:Antisense]][[Category:NONHSAG029967]][[Category:Transcripts]][[Category:Transcripts]]