Difference between revisions of "NONHSAT021808"
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sequence = <dnaseq>CTGGTGGTCAGGGCGCCATGGCGCTGTCCTGGCTGCAGCGCGTCGAGCTTGCGCTCTTTGCTGCCGCCTTCCTGTGCGGGGCCGTGGCGGCCGCGGCGATGACTCGGACCCAGCAGCTGCATCGAGGACTCCCACAGAGGTGCTATAGGGCTGCGCATTGCACTGGCCATCTCAGCTATAGCCGTCTTCCTGGTCTTGGTGTCTGCCTGTATCCTTCGATTTGGCACCAGGTCTCTCTGCAACTCCATCATCTCCTTGAACACTACAATTAGCTGTTCTGAAGCCCAGAAAATTCCATGGACACCCCCTGGAACTGCTCTGCAGTTTTACTCCAACCTACACAATGCTGAAGTGAGACCCAAGGATAGGAGGAAAAACTGACATAAATATCTGTAGCTGTGTGGGTGCTCACCAGTGTATTGTGAGCTTGGCCTACCAGTGAGAGGAGCTGAAGGGGTTGTCAGCTTAAAATTCAGCAGTTCAGAGTGGTGTGTGGGTGGGAAGGACTGGATTTGAAATGGTCCCACTCCTGACGATCCTGTCCCTGTCTCCTACAGACCTCTTCTTGGGTGAATTTGGTATTGTGGTGTGTGGTCTTGGTGCTCCAGGTCGTGCAGTGGAAGTCTGAAGCCACCCCATACCGGCCTCTGGAGAGGGGTGACCCTGAGTGGAGCTCTGAGACAGATGCTCTCGTTGGGTCACGCCTTTCCCATTCCTGAAGAATAAGCGGAGTGCTTCCTGCAGCCGAAGACTCCATGCCCAAGTGCCTGTAATCCCCCCCCTCAAGGCCCTGTTTATGTTGGGAGTCTTAGTTTTCCTTTCGTTGGGGGGTGGGGGGG</dnaseq>| | sequence = <dnaseq>CTGGTGGTCAGGGCGCCATGGCGCTGTCCTGGCTGCAGCGCGTCGAGCTTGCGCTCTTTGCTGCCGCCTTCCTGTGCGGGGCCGTGGCGGCCGCGGCGATGACTCGGACCCAGCAGCTGCATCGAGGACTCCCACAGAGGTGCTATAGGGCTGCGCATTGCACTGGCCATCTCAGCTATAGCCGTCTTCCTGGTCTTGGTGTCTGCCTGTATCCTTCGATTTGGCACCAGGTCTCTCTGCAACTCCATCATCTCCTTGAACACTACAATTAGCTGTTCTGAAGCCCAGAAAATTCCATGGACACCCCCTGGAACTGCTCTGCAGTTTTACTCCAACCTACACAATGCTGAAGTGAGACCCAAGGATAGGAGGAAAAACTGACATAAATATCTGTAGCTGTGTGGGTGCTCACCAGTGTATTGTGAGCTTGGCCTACCAGTGAGAGGAGCTGAAGGGGTTGTCAGCTTAAAATTCAGCAGTTCAGAGTGGTGTGTGGGTGGGAAGGACTGGATTTGAAATGGTCCCACTCCTGACGATCCTGTCCCTGTCTCCTACAGACCTCTTCTTGGGTGAATTTGGTATTGTGGTGTGTGGTCTTGGTGCTCCAGGTCGTGCAGTGGAAGTCTGAAGCCACCCCATACCGGCCTCTGGAGAGGGGTGACCCTGAGTGGAGCTCTGAGACAGATGCTCTCGTTGGGTCACGCCTTTCCCATTCCTGAAGAATAAGCGGAGTGCTTCCTGCAGCCGAAGACTCCATGCCCAAGTGCCTGTAATCCCCCCCCTCAAGGCCCTGTTTATGTTGGGAGTCTTAGTTTTCCTTTCGTTGGGGGGTGGGGGGG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG008544]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG008544]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:35, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT021808 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
839 nt |
Genomic location |
chr11+:62554887..62557639 |
Exon number |
4 |
Exons |
62554887..62554999,62556659..62556682,62556764..62556898,62557073..62557639 |
Genome context |
|
Sequence |
000001 CTGGTGGTCA GGGCGCCATG GCGCTGTCCT GGCTGCAGCG CGTCGAGCTT GCGCTCTTTG CTGCCGCCTT CCTGTGCGGG 000080
000081 GCCGTGGCGG CCGCGGCGAT GACTCGGACC CAGCAGCTGC ATCGAGGACT CCCACAGAGG TGCTATAGGG CTGCGCATTG 000160 000161 CACTGGCCAT CTCAGCTATA GCCGTCTTCC TGGTCTTGGT GTCTGCCTGT ATCCTTCGAT TTGGCACCAG GTCTCTCTGC 000240 000241 AACTCCATCA TCTCCTTGAA CACTACAATT AGCTGTTCTG AAGCCCAGAA AATTCCATGG ACACCCCCTG GAACTGCTCT 000320 000321 GCAGTTTTAC TCCAACCTAC ACAATGCTGA AGTGAGACCC AAGGATAGGA GGAAAAACTG ACATAAATAT CTGTAGCTGT 000400 000401 GTGGGTGCTC ACCAGTGTAT TGTGAGCTTG GCCTACCAGT GAGAGGAGCT GAAGGGGTTG TCAGCTTAAA ATTCAGCAGT 000480 000481 TCAGAGTGGT GTGTGGGTGG GAAGGACTGG ATTTGAAATG GTCCCACTCC TGACGATCCT GTCCCTGTCT CCTACAGACC 000560 000561 TCTTCTTGGG TGAATTTGGT ATTGTGGTGT GTGGTCTTGG TGCTCCAGGT CGTGCAGTGG AAGTCTGAAG CCACCCCATA 000640 000641 CCGGCCTCTG GAGAGGGGTG ACCCTGAGTG GAGCTCTGAG ACAGATGCTC TCGTTGGGTC ACGCCTTTCC CATTCCTGAA 000720 000721 GAATAAGCGG AGTGCTTCCT GCAGCCGAAG ACTCCATGCC CAAGTGCCTG TAATCCCCCC CCTCAAGGCC CTGTTTATGT 000800 000801 TGGGAGTCTT AGTTTTCCTT TCGTTGGGGG GTGGGGGGG |
Predicted Small Protein
Name | NONHSAT021808_smProtein_17:271 |
Length | 85 |
Molecular weight | 9425.9149 |
Aromaticity | 0.0952380952381 |
Instability index | 40.9392857143 |
Isoelectric point | 9.20037841797 |
Runs | 9 |
Runs residual | 0.0268425841674 |
Runs probability | 0.0326502973561 |
Amino acid sequence | MALSWLQRVELALFAAAFLCGAVAAAAMTRTQQLHRGLPQRCYRAAHCTGHLSYSRLPGL GVCLYPSIWHQVSLQLHHLLEHYN |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHLLLLLLLLLLLL LEEEELLHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |