Difference between revisions of "ENST00000557355.1"
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sequence = <dnaseq>AGGACTTCCCAAGAGTGTCCCATGGAACCTGAGTTCTAAGGACGGTACATGAAAAAAATCAACATGGGTTCCATGATCAAAGAAGTTTGGGAAATGGGCTAAATGAAAGGACTTCCAAGGCCTTTTATCTGCTAATGAGAAAGAACAAGCCCTGTGAAAAACAAGCTGCTGTCCCTGCTAGAGGCATCCTGCAATCCATGGATGTTTATCACCAAGCCATTGTTAACATGAGGTGGTTTCCAAAAGGAAAAGCTTTGGGAGATAGAAGTCCTCGTTTTGACCTCTGCCCTCCTTGTACACCAGGAGCCAGAAAAACTTCATCTCTTTTACAAGAAACATTGAGATTCCTGTAAAATTAAGAAATCACACAATTTGATGGTCTACATTATCTAAAGCAAATGAGACTTCTATTTGGAACAAAGACTACCTTGTTGGGAAATGAGTCTGCAAGTTAAAGTGTTTTCTGGCACCTGTGCAATTGTTTCCTACTACCCTGCGTGCTGCTTAAGTCTGATGAAGACATTCTTCTTTGGAGTCTGACATTAGGT</dnaseq>| | sequence = <dnaseq>AGGACTTCCCAAGAGTGTCCCATGGAACCTGAGTTCTAAGGACGGTACATGAAAAAAATCAACATGGGTTCCATGATCAAAGAAGTTTGGGAAATGGGCTAAATGAAAGGACTTCCAAGGCCTTTTATCTGCTAATGAGAAAGAACAAGCCCTGTGAAAAACAAGCTGCTGTCCCTGCTAGAGGCATCCTGCAATCCATGGATGTTTATCACCAAGCCATTGTTAACATGAGGTGGTTTCCAAAAGGAAAAGCTTTGGGAGATAGAAGTCCTCGTTTTGACCTCTGCCCTCCTTGTACACCAGGAGCCAGAAAAACTTCATCTCTTTTACAAGAAACATTGAGATTCCTGTAAAATTAAGAAATCACACAATTTGATGGTCTACATTATCTAAAGCAAATGAGACTTCTATTTGGAACAAAGACTACCTTGTTGGGAAATGAGTCTGCAAGTTAAAGTGTTTTCTGGCACCTGTGCAATTGTTTCCTACTACCCTGCGTGCTGCTTAAGTCTGATGAAGACATTCTTCTTTGGAGTCTGACATTAGGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-GPR65-1]][[Category:NONHSAG015652]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:lnc-GPR65-1]][[Category:NONHSAG015652]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 17:40, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000557355.1 |
| Source |
Gencode19 |
| Same with |
lnc-GPR65-1:10,NONHSAT038183 |
| Classification |
intergenic |
| Length |
548 nt |
| Genomic location |
chr14+:88503281..88514483 |
| Exon number |
4 |
| Exons |
88503281..88503423,88503695..88503783,88510959..88511192,88514402..88514483 |
| Genome context |
|
| Sequence |
000001 AGGACTTCCC AAGAGTGTCC CATGGAACCT GAGTTCTAAG GACGGTACAT GAAAAAAATC AACATGGGTT CCATGATCAA 000080
000081 AGAAGTTTGG GAAATGGGCT AAATGAAAGG ACTTCCAAGG CCTTTTATCT GCTAATGAGA AAGAACAAGC CCTGTGAAAA 000160 000161 ACAAGCTGCT GTCCCTGCTA GAGGCATCCT GCAATCCATG GATGTTTATC ACCAAGCCAT TGTTAACATG AGGTGGTTTC 000240 000241 CAAAAGGAAA AGCTTTGGGA GATAGAAGTC CTCGTTTTGA CCTCTGCCCT CCTTGTACAC CAGGAGCCAG AAAAACTTCA 000320 000321 TCTCTTTTAC AAGAAACATT GAGATTCCTG TAAAATTAAG AAATCACACA ATTTGATGGT CTACATTATC TAAAGCAAAT 000400 000401 GAGACTTCTA TTTGGAACAA AGACTACCTT GTTGGGAAAT GAGTCTGCAA GTTAAAGTGT TTTCTGGCAC CTGTGCAATT 000480 000481 GTTTCCTACT ACCCTGCGTG CTGCTTAAGT CTGATGAAGA CATTCTTCTT TGGAGTCTGA CATTAGGT |
Predicted Small Protein
| Name | ENST00000557355.1_smProtein_134:352 |
| Length | 73 |
| Molecular weight | 8157.533 |
| Aromaticity | 0.0694444444444 |
| Instability index | 68.3305555556 |
| Isoelectric point | 10.1506958008 |
| Runs | 9 |
| Runs residual | 0.0159164639092 |
| Runs probability | 0.0477241947831 |
| Amino acid sequence | MRKNKPCEKQAAVPARGILQSMDVYHQAIVNMRWFPKGKALGDRSPRFDLCPPCTPGARK TSSLLQETLRFL |
| Secondary structure | LLLLLHHHHLLLLLHHHHHHHHHHHHHHHHHLEELLLLLLLLLLLLLLLLLLLLLLLLLL LLHHHHHHHHHL |
| PRMN | - |
| PiMo | - |
