Difference between revisions of "NONHSAT007465"

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sequence = <dnaseq>TCTGACGTCCCAGGGCTCAAGCGCGGAGGACATGTGGAACTCCACTCCAAAAGCGGCGGCTTGCGGCGGAGCTCTCTCTAGTGAGGCGGCCAGCTGGCGTTCGTGGCACACTTGCTGTCGGCTCCGCTCATCTGTTGGGAATGCGTCCTGTGGGCCTAGTCCTCCGCTGGAAGAAACGCGCTGTTCTCCCCAACCACCGTTTATCATTCTTATTCACCGTCTCCGGAATGTCCATTCAGTTTCCGCTCCTGAGAGACTTAGTGACTGAGGCCAGGCAAAGATTTCACCTTGGGGAGGGGGAACGTTAAACCTTTCCTCCAGCAGCTTTCGTGTTTTAAATTGTATTCATCCGCCATGGAAAGACATCAGAAGCCCAGGATCTAAGAGACAGACTGAAATGAAGAAAGTAGATAATATTGTGAGAATAATGAACAAGCTGGTCACTGAACAGCAGAACCGTAATGGAGTCCCAGTTAAAGGGTTTTAACTTTATTTCGTCACTTTTTGCAAGCATGATACAAAGAAAACAAACACCTAACTACGCTACGGTTTATAGTTAAAAGGAAGGTGGAAGATCCTGAGTCATTACAGCAATCACAAAACATGATGGATTTCTTCATTTAAAAACACAAAAGAGGTCTTGGCATAGTTTTCAAGGGCAAAGCATGACAAGACTCTCCAGTGCTTTCTTTCATCCCCCTCTGTGTGCCTTTTTCTGCCTGACTCACAGCCTGGCTCAATCCTAATCTTTCTACTGCAAAGATGCAGCATTTAAAGCAATTTTTCCTGTGCAGTATTTGTAGAATGACAGATCCTGCCAGAAGCTCTTGGAAACATTTTGGAACTATCTTGCTTTTCTGTATGTTATGATCCATCTAGCACCGTTTTCCTCCTGTGGTAGCAAATGACACTTTTTTCAAGCATCAGCAGCAGAAATGAGTCTACCAGATGGAATAAGATACTGGTAAAGGGAAAGATTTGTTTCTAAGACTGCACAAATGAATGCACCCAAATCTGTGAGTTGATTAATCTGTGAAGAAATACAACTGGCAGTATTTACATATCTcaatgagtctcaaagtgtggtcgaggaagccctgggggtccttgggaccctttcagaggttccacgagctcaaatctattttcataaccatgctaagtctttatttccttttccactccagaggctatataatgtctgatgacatcatcgctttataggatgagagaatacgtgcttgtatattcttgtgtttgtaagactttccaggtttaatttattaccatatggcaattttcaataagtataacccacaaaacccaacagatttttggggcacctctaacaagggtcctaagaccaaaatgtttgaggactgctAATCGATATTATTCAATTGTCTAGTCCCCTAAACTCCAACCCTTCTTATCAGGACTACAGAGAGAAAACAGGTGGTCTTCTTGACAATCGCTTTGTATTTACATTCAGTGCTTTAGTAGAAGAGAAGAAAGAAAGAGAAAGCAAGCCAGAGAGGCCTCGGAAAGAGAAGCCTACTTATTAAAAATAGCTTTCTggctggtcacggtggctcactcctgtaatcccagcactttgggaggccgagacgggcggatcacttgaggtcaggagtctcagaccagccaggccaacatggcgaaaacacgtctctactaaaaatgcaaaaattagccgggcatagtggcatgcacgcctgtagtcccagctacttgggaggcagaggcaggagagccacttgaacccaggaggcggaggttgcagtgagcggagagcgagactcgcgagtactcgtctcaaaaaacaaaacaacaataacaaaaaCAGCTTTCCATCCCTTCCCTGAGGCTTGGGTACCTGAACCACGTTAATCTGTAAATCACTGCTTCTGTAACTTTTCCTTGGTATAAATCACATAGGCAATGAGGTTGGGTATAAACAGTAATTGTCCTTGAATTGGGTAGATGTTTTCTTATTATTTTTGTCTAAGAGGTCATtgcgataggcagaattctaagaatgatccccagtgacgcttgcccttgtataacccccacccatttgagtgtgaggtgaaacctatgaatttgatgaggcaatactcctgttattatgttacgttttatgacagatgtgagattttccaggtgggcccaatctaatcacaacagccctttaaaagcagagattttccgtctgctaagagcagaagaggaagtcagagagatttgaaggatgagaagaatttgacgtgctgctgttggagggggctacataccaagaaatgtgggcatcctatagcaactgaaactggctcctggctgacagccagcagagaatcaggatatcagtcccagaatcataaggaactgaattctgctaaaaacctaaatgagcttggaagtgggattcttccgagaagagcccagccgggtcaccatcttaattttggtctgcgaaaccgtaagcagagaatccactcaagcccacctggatctacagaactgtgagctaagctgatgtggtaatattttaaagccgctaaatttttgttcatttgttgtgcagcaataggaatctaacacaAAGGTAAATAGAATATAttttttaaatcgaggcaatattcacataacataaaattaaccattaattaagtgtacaacccagtggcattactacattcataatattgtgaaaccatcacttctgtctaattccaagacattttcaccaccctacaggaaactgatacccattaagcagtcactccctgttccctcctccccttagtccctggcaaacactaatatgctttctgcctatggatttgtctattctggaggttacatacaatttgtgaccttttgtgtctagcttctttcacttagtttaatgttttaaagattcatccacattgtagcatgtatcagtacttcgttcctttttatggctaagtaatatgtgtatatacaacattttgtttatccatcaattgataacatttggattatttttacttttg</dnaseq>|
 
sequence = <dnaseq>TCTGACGTCCCAGGGCTCAAGCGCGGAGGACATGTGGAACTCCACTCCAAAAGCGGCGGCTTGCGGCGGAGCTCTCTCTAGTGAGGCGGCCAGCTGGCGTTCGTGGCACACTTGCTGTCGGCTCCGCTCATCTGTTGGGAATGCGTCCTGTGGGCCTAGTCCTCCGCTGGAAGAAACGCGCTGTTCTCCCCAACCACCGTTTATCATTCTTATTCACCGTCTCCGGAATGTCCATTCAGTTTCCGCTCCTGAGAGACTTAGTGACTGAGGCCAGGCAAAGATTTCACCTTGGGGAGGGGGAACGTTAAACCTTTCCTCCAGCAGCTTTCGTGTTTTAAATTGTATTCATCCGCCATGGAAAGACATCAGAAGCCCAGGATCTAAGAGACAGACTGAAATGAAGAAAGTAGATAATATTGTGAGAATAATGAACAAGCTGGTCACTGAACAGCAGAACCGTAATGGAGTCCCAGTTAAAGGGTTTTAACTTTATTTCGTCACTTTTTGCAAGCATGATACAAAGAAAACAAACACCTAACTACGCTACGGTTTATAGTTAAAAGGAAGGTGGAAGATCCTGAGTCATTACAGCAATCACAAAACATGATGGATTTCTTCATTTAAAAACACAAAAGAGGTCTTGGCATAGTTTTCAAGGGCAAAGCATGACAAGACTCTCCAGTGCTTTCTTTCATCCCCCTCTGTGTGCCTTTTTCTGCCTGACTCACAGCCTGGCTCAATCCTAATCTTTCTACTGCAAAGATGCAGCATTTAAAGCAATTTTTCCTGTGCAGTATTTGTAGAATGACAGATCCTGCCAGAAGCTCTTGGAAACATTTTGGAACTATCTTGCTTTTCTGTATGTTATGATCCATCTAGCACCGTTTTCCTCCTGTGGTAGCAAATGACACTTTTTTCAAGCATCAGCAGCAGAAATGAGTCTACCAGATGGAATAAGATACTGGTAAAGGGAAAGATTTGTTTCTAAGACTGCACAAATGAATGCACCCAAATCTGTGAGTTGATTAATCTGTGAAGAAATACAACTGGCAGTATTTACATATCTcaatgagtctcaaagtgtggtcgaggaagccctgggggtccttgggaccctttcagaggttccacgagctcaaatctattttcataaccatgctaagtctttatttccttttccactccagaggctatataatgtctgatgacatcatcgctttataggatgagagaatacgtgcttgtatattcttgtgtttgtaagactttccaggtttaatttattaccatatggcaattttcaataagtataacccacaaaacccaacagatttttggggcacctctaacaagggtcctaagaccaaaatgtttgaggactgctAATCGATATTATTCAATTGTCTAGTCCCCTAAACTCCAACCCTTCTTATCAGGACTACAGAGAGAAAACAGGTGGTCTTCTTGACAATCGCTTTGTATTTACATTCAGTGCTTTAGTAGAAGAGAAGAAAGAAAGAGAAAGCAAGCCAGAGAGGCCTCGGAAAGAGAAGCCTACTTATTAAAAATAGCTTTCTggctggtcacggtggctcactcctgtaatcccagcactttgggaggccgagacgggcggatcacttgaggtcaggagtctcagaccagccaggccaacatggcgaaaacacgtctctactaaaaatgcaaaaattagccgggcatagtggcatgcacgcctgtagtcccagctacttgggaggcagaggcaggagagccacttgaacccaggaggcggaggttgcagtgagcggagagcgagactcgcgagtactcgtctcaaaaaacaaaacaacaataacaaaaaCAGCTTTCCATCCCTTCCCTGAGGCTTGGGTACCTGAACCACGTTAATCTGTAAATCACTGCTTCTGTAACTTTTCCTTGGTATAAATCACATAGGCAATGAGGTTGGGTATAAACAGTAATTGTCCTTGAATTGGGTAGATGTTTTCTTATTATTTTTGTCTAAGAGGTCATtgcgataggcagaattctaagaatgatccccagtgacgcttgcccttgtataacccccacccatttgagtgtgaggtgaaacctatgaatttgatgaggcaatactcctgttattatgttacgttttatgacagatgtgagattttccaggtgggcccaatctaatcacaacagccctttaaaagcagagattttccgtctgctaagagcagaagaggaagtcagagagatttgaaggatgagaagaatttgacgtgctgctgttggagggggctacataccaagaaatgtgggcatcctatagcaactgaaactggctcctggctgacagccagcagagaatcaggatatcagtcccagaatcataaggaactgaattctgctaaaaacctaaatgagcttggaagtgggattcttccgagaagagcccagccgggtcaccatcttaattttggtctgcgaaaccgtaagcagagaatccactcaagcccacctggatctacagaactgtgagctaagctgatgtggtaatattttaaagccgctaaatttttgttcatttgttgtgcagcaataggaatctaacacaAAGGTAAATAGAATATAttttttaaatcgaggcaatattcacataacataaaattaaccattaattaagtgtacaacccagtggcattactacattcataatattgtgaaaccatcacttctgtctaattccaagacattttcaccaccctacaggaaactgatacccattaagcagtcactccctgttccctcctccccttagtccctggcaaacactaatatgctttctgcctatggatttgtctattctggaggttacatacaatttgtgaccttttgtgtctagcttctttcacttagtttaatgttttaaagattcatccacattgtagcatgtatcagtacttcgttcctttttatggctaagtaatatgtgtatatacaacattttgtttatccatcaattgataacatttggattatttttacttttg</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG003413]][[Category:Transcripts]]
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[[Category:Intergenic]][[Category:NONHSAG003413]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 19:46, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT007465

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3062 nt

Genomic location

chr1+:169455353..169458414

Exon number

1

Exons

169455353..169458414

Genome context

Sequence
000001 TCTGACGTCC CAGGGCTCAA GCGCGGAGGA CATGTGGAAC TCCACTCCAA AAGCGGCGGC TTGCGGCGGA GCTCTCTCTA 000080
000081 GTGAGGCGGC CAGCTGGCGT TCGTGGCACA CTTGCTGTCG GCTCCGCTCA TCTGTTGGGA ATGCGTCCTG TGGGCCTAGT 000160
000161 CCTCCGCTGG AAGAAACGCG CTGTTCTCCC CAACCACCGT TTATCATTCT TATTCACCGT CTCCGGAATG TCCATTCAGT 000240
000241 TTCCGCTCCT GAGAGACTTA GTGACTGAGG CCAGGCAAAG ATTTCACCTT GGGGAGGGGG AACGTTAAAC CTTTCCTCCA 000320
000321 GCAGCTTTCG TGTTTTAAAT TGTATTCATC CGCCATGGAA AGACATCAGA AGCCCAGGAT CTAAGAGACA GACTGAAATG 000400
000401 AAGAAAGTAG ATAATATTGT GAGAATAATG AACAAGCTGG TCACTGAACA GCAGAACCGT AATGGAGTCC CAGTTAAAGG 000480
000481 GTTTTAACTT TATTTCGTCA CTTTTTGCAA GCATGATACA AAGAAAACAA ACACCTAACT ACGCTACGGT TTATAGTTAA 000560
000561 AAGGAAGGTG GAAGATCCTG AGTCATTACA GCAATCACAA AACATGATGG ATTTCTTCAT TTAAAAACAC AAAAGAGGTC 000640
000641 TTGGCATAGT TTTCAAGGGC AAAGCATGAC AAGACTCTCC AGTGCTTTCT TTCATCCCCC TCTGTGTGCC TTTTTCTGCC 000720
000721 TGACTCACAG CCTGGCTCAA TCCTAATCTT TCTACTGCAA AGATGCAGCA TTTAAAGCAA TTTTTCCTGT GCAGTATTTG 000800
000801 TAGAATGACA GATCCTGCCA GAAGCTCTTG GAAACATTTT GGAACTATCT TGCTTTTCTG TATGTTATGA TCCATCTAGC 000880
000881 ACCGTTTTCC TCCTGTGGTA GCAAATGACA CTTTTTTCAA GCATCAGCAG CAGAAATGAG TCTACCAGAT GGAATAAGAT 000960
000961 ACTGGTAAAG GGAAAGATTT GTTTCTAAGA CTGCACAAAT GAATGCACCC AAATCTGTGA GTTGATTAAT CTGTGAAGAA 001040
001041 ATACAACTGG CAGTATTTAC ATATCTcaat gagtctcaaa gtgtggtcga ggaagccctg ggggtccttg ggaccctttc 001120
001121 agaggttcca cgagctcaaa tctattttca taaccatgct aagtctttat ttccttttcc actccagagg ctatataatg 001200
001201 tctgatgaca tcatcgcttt ataggatgag agaatacgtg cttgtatatt cttgtgtttg taagactttc caggtttaat 001280
001281 ttattaccat atggcaattt tcaataagta taacccacaa aacccaacag atttttgggg cacctctaac aagggtccta 001360
001361 agaccaaaat gtttgaggac tgctAATCGA TATTATTCAA TTGTCTAGTC CCCTAAACTC CAACCCTTCT TATCAGGACT 001440
001441 ACAGAGAGAA AACAGGTGGT CTTCTTGACA ATCGCTTTGT ATTTACATTC AGTGCTTTAG TAGAAGAGAA GAAAGAAAGA 001520
001521 GAAAGCAAGC CAGAGAGGCC TCGGAAAGAG AAGCCTACTT ATTAAAAATA GCTTTCTggc tggtcacggt ggctcactcc 001600
001601 tgtaatccca gcactttggg aggccgagac gggcggatca cttgaggtca ggagtctcag accagccagg ccaacatggc 001680
001681 gaaaacacgt ctctactaaa aatgcaaaaa ttagccgggc atagtggcat gcacgcctgt agtcccagct acttgggagg 001760
001761 cagaggcagg agagccactt gaacccagga ggcggaggtt gcagtgagcg gagagcgaga ctcgcgagta ctcgtctcaa 001840
001841 aaaacaaaac aacaataaca aaaaCAGCTT TCCATCCCTT CCCTGAGGCT TGGGTACCTG AACCACGTTA ATCTGTAAAT 001920
001921 CACTGCTTCT GTAACTTTTC CTTGGTATAA ATCACATAGG CAATGAGGTT GGGTATAAAC AGTAATTGTC CTTGAATTGG 002000
002001 GTAGATGTTT TCTTATTATT TTTGTCTAAG AGGTCATtgc gataggcaga attctaagaa tgatccccag tgacgcttgc 002080
002081 ccttgtataa cccccaccca tttgagtgtg aggtgaaacc tatgaatttg atgaggcaat actcctgtta ttatgttacg 002160
002161 ttttatgaca gatgtgagat tttccaggtg ggcccaatct aatcacaaca gccctttaaa agcagagatt ttccgtctgc 002240
002241 taagagcaga agaggaagtc agagagattt gaaggatgag aagaatttga cgtgctgctg ttggaggggg ctacatacca 002320
002321 agaaatgtgg gcatcctata gcaactgaaa ctggctcctg gctgacagcc agcagagaat caggatatca gtcccagaat 002400
002401 cataaggaac tgaattctgc taaaaaccta aatgagcttg gaagtgggat tcttccgaga agagcccagc cgggtcacca 002480
002481 tcttaatttt ggtctgcgaa accgtaagca gagaatccac tcaagcccac ctggatctac agaactgtga gctaagctga 002560
002561 tgtggtaata ttttaaagcc gctaaatttt tgttcatttg ttgtgcagca ataggaatct aacacaAAGG TAAATAGAAT 002640
002641 ATAtttttta aatcgaggca atattcacat aacataaaat taaccattaa ttaagtgtac aacccagtgg cattactaca 002720
002721 ttcataatat tgtgaaacca tcacttctgt ctaattccaa gacattttca ccaccctaca ggaaactgat acccattaag 002800
002801 cagtcactcc ctgttccctc ctccccttag tccctggcaa acactaatat gctttctgcc tatggatttg tctattctgg 002880
002881 aggttacata caatttgtga ccttttgtgt ctagcttctt tcacttagtt taatgtttta aagattcatc cacattgtag 002960
002961 catgtatcag tacttcgttc ctttttatgg ctaagtaata tgtgtatata caacattttg tttatccatc aattgataac 003040
003041 atttggatta tttttacttt tg
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Predicted Small Protein

Name NONHSAT007465_smProtein_140:307
Length 56
Molecular weight 6460.5889
Aromaticity 0.0909090909091
Instability index 53.5927272727
Isoelectric point 11.7855834961
Runs 11
Runs residual 0.0484848484848
Runs probability 0.0403076873665
Amino acid sequence MRPVGLVLRWKKRAVLPNHRLSFLFTVSGMSIQFPLLRDLVTEARQRFHLGEGER
Secondary structure LLLEEEEEEEELEEELLLLLEEEEEEELLLEEELHHHHHHHHHHHHHHHLLLLLL
PRMN -
PiMo -