Difference between revisions of "NONHSAT074563"
Line 42: | Line 42: | ||
sequence = <dnaseq>TCATCTTCCATTCCTGTGAGCGGCCATTGCATCCCTGCCTTGGATCCTGAGTAGATTTGCTCAGGTCATCCCTGCCTGGCAATCTTCCTCTGCCCCAGGGGAAGCCAGGCCTGGCGTGGGAGGTTACGGGCCTGCACAAACCTACCAGCAGGGCCTCCTTGGGCAGCGTGGACCTGGAGCTTCTCTTGGGGCCACCAGTGTGTTGGGGCAGGGGAGGAGCTGGTGTCCTTCGCGGGGAGACCCTAGAAGCTACCTTAAGCCATTCCCTTCCCTTCCCATGTGGCCTTTGACAGCTCTGGTAAAGTAGAAGTATCACATGTAAGCTGGGAGCCCCAGTGGGCTGCTGTGTGAAAGGAGATGGCAGTCACTATCTAGTAGCTCCAGTTCTGTTTTTATGGCCATTTCTCCAACCATGTAGCCAATACTTTGCAAAAAACTTAGCATAATAGACTTTACATTTCTCTTCTGGAGGGAAAGGAAAAAACCTCAGGTTACTTAGAGGAGACTCGGGAGGGAAAGGATGCAGGTTGGGATAGAAtgcccttctcaatctggataacctccatcaatgtatttaacctcattcttagttttctcatcggaaagcagggatgatgatgataATGTGACGTCACACGATTGAGAAAGGTTATAGGTAACCACACGTCCTGAACACCCAACTCGGAATCTGGCCCAGCAGACACTCAGATATGAGTCCCcaagtatttgaatgtctactgtgagcctggaactgtcctggggactgtggactcaacagaaaaccacacccctgcctctaggaggtttgcgttctagcgggcacgggcgagaccagctataaaccacatatggcgtcagttcccagaagagaaataaagcaggtacagaatgatggtgggggtgacggctctattctgggaggtatctggtgacatttgagcagagacttgatggGCCCAGGTGGTGGCTATCACTCGTGAGAGCTTTGGGCATCATTCCTCCCAGCACATGCTCCAGTTACGTGGAGGCAGGACTGGCATTTGGGTGATTTTCTTGGATTGCTTGGCACTGCCATCTAGCCTCTCTCCACTTCCTTTGCAGGGTTTAACTCCCTCGTGGGTGGCGTGATGGGCTTCTCCATTCTTCTGAGCGCGGAAGTGTTCAAGCATGACTCGGCGGTCTGGTACCTGGACGGCAGCATAGGCGTTCTGATCGGCCTCACCATATTTGCCTATGGGGTCAAACTCCTCATCGACATGGTGCCGAGGGTGAGGCAGACACGTCACTACGAGATGTTTGAGTGAAGGGGGCCAGCATCCGCATGAGACCATCGAGATGAGGAGTTTCCACATAGGCAAAGGGTGCCAATATTTAACTGAACATCTGGTTTCTTTTTGGAAGTTTTCTTTCACATGGTTTGTCATTACAAGACAAGGTCTGCCCAGCCAGGTGGATCTACCTTGCCCCCATCACCTGCCGCCCCCATCAAACATGTTGGGACAATGCCCATAGGAATGGACCTCCTTCCCCGTCTCCAGCTGGGACTGGCGTTTTTTAGTCTCTGGAGTATGATGGTTCTCATGGGTAGGATGAGATCTTTGGCAGAAAGGTCTTCGGTGGTGCTCTGAGCCTGCGCTGCATAGGACTGAGCAGACCCACCTCCTCCAGCTTGGGTGGCCCTGCCACTCCTGGTTCCAAGTCTCTCCTTTCCTGGCAGGTCTTAAGGGAAGATTGTACCCCTCACCCTTTACATACCCAGAATCATCAGTATGTCACTTCCTAATTTCTATCAGTGTATCTCATTATTTCATACTGTTTTACTAATCCTAAGTCTAAACAGATTTGCTCAAAAGGAGACCATTCTATTTTTTAAAGTACTTAGTGATACACGTATAAGCTTTGCATGGACGAATTAAATAAGCACATTGACCTTTTCTTGTACATTCAGAACCTGAACATCCATGTGAAAACTGGGTCCATTTTTGAGAGATGTGAAACTACAGTTTATTTGTAATAAATAAATATAATCTATCCGTATATGCATATATCTATATGCTGTGTTAAGTGGTAATGGGTACATTACAGTCTGTGAGAGATGGATCGCTCCCTCTGTAAGGAACAAGACGTTCTCAGCTGATGTCACGGTAGGTTTAGATTCTGTAGAGTGTTCCCCAACCCGCACCGTTCTGTACCTCTCACACCACTGCTTGCCCGGGCAGTAGTGGCTGACCAATAAAGACCTTTACCTGTTTTGTATGGC</dnaseq>| | sequence = <dnaseq>TCATCTTCCATTCCTGTGAGCGGCCATTGCATCCCTGCCTTGGATCCTGAGTAGATTTGCTCAGGTCATCCCTGCCTGGCAATCTTCCTCTGCCCCAGGGGAAGCCAGGCCTGGCGTGGGAGGTTACGGGCCTGCACAAACCTACCAGCAGGGCCTCCTTGGGCAGCGTGGACCTGGAGCTTCTCTTGGGGCCACCAGTGTGTTGGGGCAGGGGAGGAGCTGGTGTCCTTCGCGGGGAGACCCTAGAAGCTACCTTAAGCCATTCCCTTCCCTTCCCATGTGGCCTTTGACAGCTCTGGTAAAGTAGAAGTATCACATGTAAGCTGGGAGCCCCAGTGGGCTGCTGTGTGAAAGGAGATGGCAGTCACTATCTAGTAGCTCCAGTTCTGTTTTTATGGCCATTTCTCCAACCATGTAGCCAATACTTTGCAAAAAACTTAGCATAATAGACTTTACATTTCTCTTCTGGAGGGAAAGGAAAAAACCTCAGGTTACTTAGAGGAGACTCGGGAGGGAAAGGATGCAGGTTGGGATAGAAtgcccttctcaatctggataacctccatcaatgtatttaacctcattcttagttttctcatcggaaagcagggatgatgatgataATGTGACGTCACACGATTGAGAAAGGTTATAGGTAACCACACGTCCTGAACACCCAACTCGGAATCTGGCCCAGCAGACACTCAGATATGAGTCCCcaagtatttgaatgtctactgtgagcctggaactgtcctggggactgtggactcaacagaaaaccacacccctgcctctaggaggtttgcgttctagcgggcacgggcgagaccagctataaaccacatatggcgtcagttcccagaagagaaataaagcaggtacagaatgatggtgggggtgacggctctattctgggaggtatctggtgacatttgagcagagacttgatggGCCCAGGTGGTGGCTATCACTCGTGAGAGCTTTGGGCATCATTCCTCCCAGCACATGCTCCAGTTACGTGGAGGCAGGACTGGCATTTGGGTGATTTTCTTGGATTGCTTGGCACTGCCATCTAGCCTCTCTCCACTTCCTTTGCAGGGTTTAACTCCCTCGTGGGTGGCGTGATGGGCTTCTCCATTCTTCTGAGCGCGGAAGTGTTCAAGCATGACTCGGCGGTCTGGTACCTGGACGGCAGCATAGGCGTTCTGATCGGCCTCACCATATTTGCCTATGGGGTCAAACTCCTCATCGACATGGTGCCGAGGGTGAGGCAGACACGTCACTACGAGATGTTTGAGTGAAGGGGGCCAGCATCCGCATGAGACCATCGAGATGAGGAGTTTCCACATAGGCAAAGGGTGCCAATATTTAACTGAACATCTGGTTTCTTTTTGGAAGTTTTCTTTCACATGGTTTGTCATTACAAGACAAGGTCTGCCCAGCCAGGTGGATCTACCTTGCCCCCATCACCTGCCGCCCCCATCAAACATGTTGGGACAATGCCCATAGGAATGGACCTCCTTCCCCGTCTCCAGCTGGGACTGGCGTTTTTTAGTCTCTGGAGTATGATGGTTCTCATGGGTAGGATGAGATCTTTGGCAGAAAGGTCTTCGGTGGTGCTCTGAGCCTGCGCTGCATAGGACTGAGCAGACCCACCTCCTCCAGCTTGGGTGGCCCTGCCACTCCTGGTTCCAAGTCTCTCCTTTCCTGGCAGGTCTTAAGGGAAGATTGTACCCCTCACCCTTTACATACCCAGAATCATCAGTATGTCACTTCCTAATTTCTATCAGTGTATCTCATTATTTCATACTGTTTTACTAATCCTAAGTCTAAACAGATTTGCTCAAAAGGAGACCATTCTATTTTTTAAAGTACTTAGTGATACACGTATAAGCTTTGCATGGACGAATTAAATAAGCACATTGACCTTTTCTTGTACATTCAGAACCTGAACATCCATGTGAAAACTGGGTCCATTTTTGAGAGATGTGAAACTACAGTTTATTTGTAATAAATAAATATAATCTATCCGTATATGCATATATCTATATGCTGTGTTAAGTGGTAATGGGTACATTACAGTCTGTGAGAGATGGATCGCTCCCTCTGTAAGGAACAAGACGTTCTCAGCTGATGTCACGGTAGGTTTAGATTCTGTAGAGTGTTCCCCAACCCGCACCGTTCTGTACCTCTCACACCACTGCTTGCCCGGGCAGTAGTGGCTGACCAATAAAGACCTTTACCTGTTTTGTATGGC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG029355]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG029355]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:35, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT074563 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2260 nt |
Genomic location |
chr2-:135213331..135216845 |
Exon number |
2 |
Exons |
135213331..135214347,135215603..135216845 |
Genome context |
|
Sequence |
000001 TCATCTTCCA TTCCTGTGAG CGGCCATTGC ATCCCTGCCT TGGATCCTGA GTAGATTTGC TCAGGTCATC CCTGCCTGGC 000080
000081 AATCTTCCTC TGCCCCAGGG GAAGCCAGGC CTGGCGTGGG AGGTTACGGG CCTGCACAAA CCTACCAGCA GGGCCTCCTT 000160 000161 GGGCAGCGTG GACCTGGAGC TTCTCTTGGG GCCACCAGTG TGTTGGGGCA GGGGAGGAGC TGGTGTCCTT CGCGGGGAGA 000240 000241 CCCTAGAAGC TACCTTAAGC CATTCCCTTC CCTTCCCATG TGGCCTTTGA CAGCTCTGGT AAAGTAGAAG TATCACATGT 000320 000321 AAGCTGGGAG CCCCAGTGGG CTGCTGTGTG AAAGGAGATG GCAGTCACTA TCTAGTAGCT CCAGTTCTGT TTTTATGGCC 000400 000401 ATTTCTCCAA CCATGTAGCC AATACTTTGC AAAAAACTTA GCATAATAGA CTTTACATTT CTCTTCTGGA GGGAAAGGAA 000480 000481 AAAACCTCAG GTTACTTAGA GGAGACTCGG GAGGGAAAGG ATGCAGGTTG GGATAGAAtg cccttctcaa tctggataac 000560 000561 ctccatcaat gtatttaacc tcattcttag ttttctcatc ggaaagcagg gatgatgatg ataATGTGAC GTCACACGAT 000640 000641 TGAGAAAGGT TATAGGTAAC CACACGTCCT GAACACCCAA CTCGGAATCT GGCCCAGCAG ACACTCAGAT ATGAGTCCCc 000720 000721 aagtatttga atgtctactg tgagcctgga actgtcctgg ggactgtgga ctcaacagaa aaccacaccc ctgcctctag 000800 000801 gaggtttgcg ttctagcggg cacgggcgag accagctata aaccacatat ggcgtcagtt cccagaagag aaataaagca 000880 000881 ggtacagaat gatggtgggg gtgacggctc tattctggga ggtatctggt gacatttgag cagagacttg atggGCCCAG 000960 000961 GTGGTGGCTA TCACTCGTGA GAGCTTTGGG CATCATTCCT CCCAGCACAT GCTCCAGTTA CGTGGAGGCA GGACTGGCAT 001040 001041 TTGGGTGATT TTCTTGGATT GCTTGGCACT GCCATCTAGC CTCTCTCCAC TTCCTTTGCA GGGTTTAACT CCCTCGTGGG 001120 001121 TGGCGTGATG GGCTTCTCCA TTCTTCTGAG CGCGGAAGTG TTCAAGCATG ACTCGGCGGT CTGGTACCTG GACGGCAGCA 001200 001201 TAGGCGTTCT GATCGGCCTC ACCATATTTG CCTATGGGGT CAAACTCCTC ATCGACATGG TGCCGAGGGT GAGGCAGACA 001280 001281 CGTCACTACG AGATGTTTGA GTGAAGGGGG CCAGCATCCG CATGAGACCA TCGAGATGAG GAGTTTCCAC ATAGGCAAAG 001360 001361 GGTGCCAATA TTTAACTGAA CATCTGGTTT CTTTTTGGAA GTTTTCTTTC ACATGGTTTG TCATTACAAG ACAAGGTCTG 001440 001441 CCCAGCCAGG TGGATCTACC TTGCCCCCAT CACCTGCCGC CCCCATCAAA CATGTTGGGA CAATGCCCAT AGGAATGGAC 001520 001521 CTCCTTCCCC GTCTCCAGCT GGGACTGGCG TTTTTTAGTC TCTGGAGTAT GATGGTTCTC ATGGGTAGGA TGAGATCTTT 001600 001601 GGCAGAAAGG TCTTCGGTGG TGCTCTGAGC CTGCGCTGCA TAGGACTGAG CAGACCCACC TCCTCCAGCT TGGGTGGCCC 001680 001681 TGCCACTCCT GGTTCCAAGT CTCTCCTTTC CTGGCAGGTC TTAAGGGAAG ATTGTACCCC TCACCCTTTA CATACCCAGA 001760 001761 ATCATCAGTA TGTCACTTCC TAATTTCTAT CAGTGTATCT CATTATTTCA TACTGTTTTA CTAATCCTAA GTCTAAACAG 001840 001841 ATTTGCTCAA AAGGAGACCA TTCTATTTTT TAAAGTACTT AGTGATACAC GTATAAGCTT TGCATGGACG AATTAAATAA 001920 001921 GCACATTGAC CTTTTCTTGT ACATTCAGAA CCTGAACATC CATGTGAAAA CTGGGTCCAT TTTTGAGAGA TGTGAAACTA 002000 002001 CAGTTTATTT GTAATAAATA AATATAATCT ATCCGTATAT GCATATATCT ATATGCTGTG TTAAGTGGTA ATGGGTACAT 002080 002081 TACAGTCTGT GAGAGATGGA TCGCTCCCTC TGTAAGGAAC AAGACGTTCT CAGCTGATGT CACGGTAGGT TTAGATTCTG 002160 002161 TAGAGTGTTC CCCAACCCGC ACCGTTCTGT ACCTCTCACA CCACTGCTTG CCCGGGCAGT AGTGGCTGAC CAATAAAGAC 002240 002241 CTTTACCTGT TTTGTATGGC |
Predicted Small Protein
Name | NONHSAT074563_smProtein_1412:1627 |
Length | 72 |
Molecular weight | 7726.2524 |
Aromaticity | 0.056338028169 |
Instability index | 76.8323943662 |
Isoelectric point | 10.8866577148 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0321694243263 |
Amino acid sequence | MVCHYKTRSAQPGGSTLPPSPAAPIKHVGTMPIGMDLLPRLQLGLAFFSLWSMMVLMGRM RSLAERSSVVL |
Secondary structure | LEEEEELLLLLLLLLLLLLLLLLLHHHLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHLLEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiii iiiiiiiiiii |