Difference between revisions of "NONHSAT034571"
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sequence = <dnaseq>CTTAAAAAATGCAAAGACAACACCAGGAAGTGGAATTTGAGACAAGTTGTTATATTGCCAGAGGGAGAGGGCTTCAGTGAATGGATCACATGCAACAATGTGGATTTTTCTACCAGAATATTAAAGAATTATCTCCTGGAGCAAGCCGTCCAGTCGTGTCTGCATATCCAAAATATAAATATTATTTGGCAGGTGATATTAACATTAAAAAGCTAATCAAATATACTCTTCTAAAATGCATGCGTTATTTTGATGACTTTGGTTCTAAATCAGCTTGATGATACTCATTTTCCTTCTAAGATTACTATCCCATTTCCCAAAATCTTTGTAACAAAGCCTATTTATTCTCAAGTGTTTGTTTAGGGTTTATACCTGTATTTATCAGCAGCACATTGATTCTGTGATGCAAAAGCAGAGGAAGCCTACTTCAACACTTTCTTAAGTACTTAATTTTCTTTGTTTAAGAGCTCAATCTGACTGATAAGGATGAGTTGACACCTCTTCAGGAATTAATTGAGAAGCTTGCAACAAAGAT</dnaseq>| | sequence = <dnaseq>CTTAAAAAATGCAAAGACAACACCAGGAAGTGGAATTTGAGACAAGTTGTTATATTGCCAGAGGGAGAGGGCTTCAGTGAATGGATCACATGCAACAATGTGGATTTTTCTACCAGAATATTAAAGAATTATCTCCTGGAGCAAGCCGTCCAGTCGTGTCTGCATATCCAAAATATAAATATTATTTGGCAGGTGATATTAACATTAAAAAGCTAATCAAATATACTCTTCTAAAATGCATGCGTTATTTTGATGACTTTGGTTCTAAATCAGCTTGATGATACTCATTTTCCTTCTAAGATTACTATCCCATTTCCCAAAATCTTTGTAACAAAGCCTATTTATTCTCAAGTGTTTGTTTAGGGTTTATACCTGTATTTATCAGCAGCACATTGATTCTGTGATGCAAAAGCAGAGGAAGCCTACTTCAACACTTTCTTAAGTACTTAATTTTCTTTGTTTAAGAGCTCAATCTGACTGATAAGGATGAGTTGACACCTCTTCAGGAATTAATTGAGAAGCTTGCAACAAAGAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG013895]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG013895]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 21:27, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT034571 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
535 nt |
| Genomic location |
chr13+:86543134..86543668 |
| Exon number |
1 |
| Exons |
86543134..86543668 |
| Genome context |
|
| Sequence |
000001 CTTAAAAAAT GCAAAGACAA CACCAGGAAG TGGAATTTGA GACAAGTTGT TATATTGCCA GAGGGAGAGG GCTTCAGTGA 000080
000081 ATGGATCACA TGCAACAATG TGGATTTTTC TACCAGAATA TTAAAGAATT ATCTCCTGGA GCAAGCCGTC CAGTCGTGTC 000160 000161 TGCATATCCA AAATATAAAT ATTATTTGGC AGGTGATATT AACATTAAAA AGCTAATCAA ATATACTCTT CTAAAATGCA 000240 000241 TGCGTTATTT TGATGACTTT GGTTCTAAAT CAGCTTGATG ATACTCATTT TCCTTCTAAG ATTACTATCC CATTTCCCAA 000320 000321 AATCTTTGTA ACAAAGCCTA TTTATTCTCA AGTGTTTGTT TAGGGTTTAT ACCTGTATTT ATCAGCAGCA CATTGATTCT 000400 000401 GTGATGCAAA AGCAGAGGAA GCCTACTTCA ACACTTTCTT AAGTACTTAA TTTTCTTTGT TTAAGAGCTC AATCTGACTG 000480 000481 ATAAGGATGA GTTGACACCT CTTCAGGAAT TAATTGAGAA GCTTGCAACA AAGAT |
Predicted Small Protein
| Name | NONHSAT034571_smProtein_80:277 |
| Length | 66 |
| Molecular weight | 7582.7754 |
| Aromaticity | 0.169230769231 |
| Instability index | 42.7616923077 |
| Isoelectric point | 9.32940673828 |
| Runs | 9 |
| Runs residual | 0.0118269230769 |
| Runs probability | 0.0445151033387 |
| Amino acid sequence | MDHMQQCGFFYQNIKELSPGASRPVVSAYPKYKYYLAGDINIKKLIKYTLLKCMRYFDDF GSKSA |
| Secondary structure | LLHHHHHHHHHHHHHHLLLLLLLLEEELLLLEEEEELLLLLHHHHHHHHHHHHHHHHHHL LLLLL |
| PRMN | - |
| PiMo | - |
