Difference between revisions of "NONHSAT002328"
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sequence = <dnaseq>CAGAGTTAAGACTGTTACTTCTTCAGGTGTCCAGGTTTCATGTCATAGTTGTAAAACCTCAGCAATCCCTCAGTATCACCTAGCCATGTCAAATGGAACTATATACAGCTTCTGCAGCTCCAGTTGTGTGGTTGCTTTCCAGAATGTATTTAGCAAGCCAAAAGGAACAAACTCTTCGGCGGTGCCCCTGTCTCAGGGCCAAGTGGTTGTAAGCCCGCCCTCCTCCAGGTCAGCAGTGTCAATAGGAGGAGGTAACACCTCTGCCGTTTCCCCCAGCTCCATCCGTGGCTCTGCTGCAGCCAGCCTCCAACCTCTTGCTGAACAATCCCAGCAAGTTGCTTTAACCCATACAGTTGTTAAACTCAAGTGTCAGCACTGTAACCATCTATTTGCCACAAAACCAGAACTTCTTTTTTACAAGGTAAAGAGAGATCATGAAAGGGATTGTATATAAACTCATCCAGTAGAAACACTTTTGTGTTTTCAATTTTGATCACTCAATTTGCTTTGACATGAAAAGGAGTTCTTAAAGATAAAGCAACTGTTTAGTTGGCTCTTAATGGACTGTTGTTTCTCTGCAGGGTAAAATGTTTCTGTTTTGTGGCAAGAATTGCTCTGATGAATACAAGAAG</dnaseq>| | sequence = <dnaseq>CAGAGTTAAGACTGTTACTTCTTCAGGTGTCCAGGTTTCATGTCATAGTTGTAAAACCTCAGCAATCCCTCAGTATCACCTAGCCATGTCAAATGGAACTATATACAGCTTCTGCAGCTCCAGTTGTGTGGTTGCTTTCCAGAATGTATTTAGCAAGCCAAAAGGAACAAACTCTTCGGCGGTGCCCCTGTCTCAGGGCCAAGTGGTTGTAAGCCCGCCCTCCTCCAGGTCAGCAGTGTCAATAGGAGGAGGTAACACCTCTGCCGTTTCCCCCAGCTCCATCCGTGGCTCTGCTGCAGCCAGCCTCCAACCTCTTGCTGAACAATCCCAGCAAGTTGCTTTAACCCATACAGTTGTTAAACTCAAGTGTCAGCACTGTAACCATCTATTTGCCACAAAACCAGAACTTCTTTTTTACAAGGTAAAGAGAGATCATGAAAGGGATTGTATATAAACTCATCCAGTAGAAACACTTTTGTGTTTTCAATTTTGATCACTCAATTTGCTTTGACATGAAAAGGAGTTCTTAAAGATAAAGCAACTGTTTAGTTGGCTCTTAATGGACTGTTGTTTCTCTGCAGGGTAAAATGTTTCTGTTTTGTGGCAAGAATTGCTCTGATGAATACAAGAAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG001005]][[Category:Transcripts]] | + | [[Category:Sense]][[Category:NONHSAG001005]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 19:21, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT002328 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
632 nt |
| Genomic location |
chr1-:35476148..35478057 |
| Exon number |
3 |
| Exons |
35476148..35476637,35477491..35477606,35478032..35478057 |
| Genome context |
|
| Sequence |
000001 CAGAGTTAAG ACTGTTACTT CTTCAGGTGT CCAGGTTTCA TGTCATAGTT GTAAAACCTC AGCAATCCCT CAGTATCACC 000080
000081 TAGCCATGTC AAATGGAACT ATATACAGCT TCTGCAGCTC CAGTTGTGTG GTTGCTTTCC AGAATGTATT TAGCAAGCCA 000160 000161 AAAGGAACAA ACTCTTCGGC GGTGCCCCTG TCTCAGGGCC AAGTGGTTGT AAGCCCGCCC TCCTCCAGGT CAGCAGTGTC 000240 000241 AATAGGAGGA GGTAACACCT CTGCCGTTTC CCCCAGCTCC ATCCGTGGCT CTGCTGCAGC CAGCCTCCAA CCTCTTGCTG 000320 000321 AACAATCCCA GCAAGTTGCT TTAACCCATA CAGTTGTTAA ACTCAAGTGT CAGCACTGTA ACCATCTATT TGCCACAAAA 000400 000401 CCAGAACTTC TTTTTTACAA GGTAAAGAGA GATCATGAAA GGGATTGTAT ATAAACTCAT CCAGTAGAAA CACTTTTGTG 000480 000481 TTTTCAATTT TGATCACTCA ATTTGCTTTG ACATGAAAAG GAGTTCTTAA AGATAAAGCA ACTGTTTAGT TGGCTCTTAA 000560 000561 TGGACTGTTG TTTCTCTGCA GGGTAAAATG TTTCTGTTTT GTGGCAAGAA TTGCTCTGAT GAATACAAGA AG |
Predicted Small Protein
| Name | NONHSAT002328_smProtein_92:211 |
| Length | 40 |
| Molecular weight | 4584.4579 |
| Aromaticity | 0.102564102564 |
| Instability index | 77.1666666667 |
| Isoelectric point | 9.69244384766 |
| Runs | 5 |
| Runs residual | 0.0405354449472 |
| Runs probability | 0.0447800741918 |
| Amino acid sequence | MELYTASAAPVVWLLSRMYLASQKEQTLRRCPCLRAKWL |
| Secondary structure | LEELLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
| PRMN | - |
| PiMo | - |
