Difference between revisions of "ENST00000417262.1"

From LncRNAWiki
Jump to: navigation, search
 
(4 intermediate revisions by 2 users not shown)
Line 3: Line 3:
 
==Annotated Information==
 
==Annotated Information==
 
===Name===
 
===Name===
KDM5BAS1
 
  
 
===Characteristics===
 
===Characteristics===
Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product.
 
  
 
===Function===
 
===Function===
KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand.
 
  
 
===Expression===
 
===Expression===
Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues.
 
  
 
===Conservation===
 
===Conservation===
Line 33: Line 29:
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
 +
 
==Labs working on this lncRNA==
 
==Labs working on this lncRNA==
 
Please input related labs here.
 
Please input related labs here.
  
 
==References==
 
==References==
Please input cited references here.
 
  
 
{{basic|
 
{{basic|
Line 53: Line 49:
 
sequence = <dnaseq>GACCTGGGCAACCCCAGCCTGGAGGTGCCGGGGCCGGAGCTCCCAGAGGGCTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCTCCTTACTCTTGGACAACACTCCGCCCCCGCCCGGGCCTCCGTCCCCCAAACCGCCCTCATTTGTGCAGCGCCAGATCCTTCGGACACATCCCTAGGTGTCTCCATCCTCATTCGGTCCATCCAACTCCCAGACCTCACGTCAACCGGCTGCACCCCACTTTCCAGCCTGCGCCCCAGATCTGCAGCCTTCGCCCCTAGATACACCCGCCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGGGCTCCAGGTGTCCGTGAGCCTCCCTTCCGCCCTGGCCTCCGGTCTCTGCCTTGCTCGTGCTTCTACCACCACCCTTCCCCTCCCAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAGCTCATCTCTCCAATTCAATGCCATCATCTCTCCTCACCATCTCTCGGTGCCCTGGAATGTTTGCTGTCAGATGTCCCCTGTGAAACCCACAAACGCTTGCGATTTGGCCTCCTTGTTTTATTTTGTGTAGTCCTACAACGTCTTGTTACTACCCCCTATTACAACACTTATAACTCAG</dnaseq>|
 
sequence = <dnaseq>GACCTGGGCAACCCCAGCCTGGAGGTGCCGGGGCCGGAGCTCCCAGAGGGCTGGGTGCGAGGCCTAGGCGGGGTCAGGTTCGGGTTCCTAGGCCATAGCGGAGCTGCAGCCCAGGCGGCCGGAGCGGAACCCAGCCCCGCTCCGAGTGCCACGTCTCCAGGAACCCCCTCCTTACTCTTGGACAACACTCCGCCCCCGCCCGGGCCTCCGTCCCCCAAACCGCCCTCATTTGTGCAGCGCCAGATCCTTCGGACACATCCCTAGGTGTCTCCATCCTCATTCGGTCCATCCAACTCCCAGACCTCACGTCAACCGGCTGCACCCCACTTTCCAGCCTGCGCCCCAGATCTGCAGCCTTCGCCCCTAGATACACCCGCCTGGTGATGAGGCGCTCCTCGCGTTCCTTCCGGGCTCCAGGTGTCCGTGAGCCTCCCTTCCGCCCTGGCCTCCGGTCTCTGCCTTGCTCGTGCTTCTACCACCACCCTTCCCCTCCCAACCCGGTGGATCCTCTCGTCTCCCCCAGTCTCCAGTGCACCGGCTTTCCCTCGTCCTCTGCGCAGTCCATCTCAGCTCATCTCTCCAATTCAATGCCATCATCTCTCCTCACCATCTCTCGGTGCCCTGGAATGTTTGCTGTCAGATGTCCCCTGTGAAACCCACAAACGCTTGCGATTTGGCCTCCTTGTTTTATTTTGTGTAGTCCTACAACGTCTTGTTACTACCCCCTATTACAACACTTATAACTCAG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:ENSG00000228288.2]][[Category:lnc-RP11-480I12.4.1-1]][[Category:Transcripts]]
+
[[Category:Intergenic]][[Category:ENSG00000228288.2]][[Category:lnc-RP11-480I12.4.1-1]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 11:49, 30 June 2016

Please input one-sentence summary here.

Annotated Information

Name

Characteristics

Function

Expression

Conservation

Please input conservation information here.

Misc

Please input misc information here.

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Regulation

Please input regulation information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Basic Information

Transcript ID

ENST00000417262.1

Source

Gencode19

Same with

lnc-RP11-480I12.4.1-1:3

Classification

intergenic

Length

748 nt

Genomic location

chr1+:202780090..202781041

Exon number

2

Exons

202780090..202780498,202780703..202781041

Genome context

Sequence
000001 GACCTGGGCA ACCCCAGCCT GGAGGTGCCG GGGCCGGAGC TCCCAGAGGG CTGGGTGCGA GGCCTAGGCG GGGTCAGGTT 000080
000081 CGGGTTCCTA GGCCATAGCG GAGCTGCAGC CCAGGCGGCC GGAGCGGAAC CCAGCCCCGC TCCGAGTGCC ACGTCTCCAG 000160
000161 GAACCCCCTC CTTACTCTTG GACAACACTC CGCCCCCGCC CGGGCCTCCG TCCCCCAAAC CGCCCTCATT TGTGCAGCGC 000240
000241 CAGATCCTTC GGACACATCC CTAGGTGTCT CCATCCTCAT TCGGTCCATC CAACTCCCAG ACCTCACGTC AACCGGCTGC 000320
000321 ACCCCACTTT CCAGCCTGCG CCCCAGATCT GCAGCCTTCG CCCCTAGATA CACCCGCCTG GTGATGAGGC GCTCCTCGCG 000400
000401 TTCCTTCCGG GCTCCAGGTG TCCGTGAGCC TCCCTTCCGC CCTGGCCTCC GGTCTCTGCC TTGCTCGTGC TTCTACCACC 000480
000481 ACCCTTCCCC TCCCAACCCG GTGGATCCTC TCGTCTCCCC CAGTCTCCAG TGCACCGGCT TTCCCTCGTC CTCTGCGCAG 000560
000561 TCCATCTCAG CTCATCTCTC CAATTCAATG CCATCATCTC TCCTCACCAT CTCTCGGTGC CCTGGAATGT TTGCTGTCAG 000640
000641 ATGTCCCCTG TGAAACCCAC AAACGCTTGC GATTTGGCCT CCTTGTTTTA TTTTGTGTAG TCCTACAACG TCTTGTTACT 000720
000721 ACCCCCTATT ACAACACTTA TAACTCAG
[back to top]