Difference between revisions of "LINC00473"
(Created page with "==Annotated Information== ===Approved Symbol=== LINC00473 ===Approved Name=== long intergenic non-protein coding RNA 473 ===Previous Symbols=== C6orf176 ===Synonyms=== bA142J1...") |
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===pubmed IDs=== | ===pubmed IDs=== | ||
22108211 | 22108211 | ||
| + | ===Disease=== | ||
| + | Disease: non-small cell lung cancer [http://www.ncbi.nlm.nih.gov/pubmed/27374438 (PMID:27374438)] | ||
| + | |||
| + | Dysfunction type: expression | ||
| + | |||
| + | Description: The expression of C6orf176-TV1 or C6orf176-TV2 is down regulated in NSCLC and it is correlated with the grade of differentiation. It may act as a diagnosis indicator for NSCLC patients | ||
| + | |||
| + | |||
| + | ===Function=== | ||
| + | Function Mechanism: NA [http://www.ncbi.nlm.nih.gov/pubmed/27374438 (PMID:27374438)] | ||
| + | |||
| + | Biological Process: pathogenic process | ||
| + | |||
| + | Description: biomarker | ||
| + | |||
===Sequence=== | ===Sequence=== | ||
>gi|223634003|ref|NR_026860.1| Homo sapiens long intergenic non-protein coding RNA 473 (LINC00473), transcript variant 1, long non-coding RNA | >gi|223634003|ref|NR_026860.1| Homo sapiens long intergenic non-protein coding RNA 473 (LINC00473), transcript variant 1, long non-coding RNA | ||
<dnaseq>GTTCCTGAGAGCACAAGCACCCCCAAATGTGAAGTGCACTCGGACACACACACACACACACACGCACGCACACACAAGCACTCATGTTCTAAAGAGAGAGGTCTGAGTCCGAAGTTGCTGCTGCTGGGAGCTTGAGCTGAGATGGACTGGTCTTCATGGGCGCCCAAGGCGCTGGGTGCAGCTTTCCCCGAGACCCCCAGATGGAAAGGAGGGAAGGAGGAACCCCACACACTCGCCTTTTGCGAGAAGATCGGCGCGCACCCCAGAGTGCCCCAAGCCTTTGGAATCTGCCTGCTGAGCGGAGCGCGCGAGCGTGGTGGACAGGTCCCGAACTTGGCCAGCGGGCTTTCTTGGCAACTTGCTTTGCGCAGTTCTCCATGGAACCCTGGACCCACTGTGCTCCCGGCGCCTTGCCTTTTTTTTTCTTTTTCTTTCTCTCACTGTCTCTTTTTAAATTTATGAACTCGAAATGAAGCGGAAAGCAGATATGCGCGTCAGCATACTTTGGCGGACCTTTTAAAAATGGAACTGTCGGCTGCGGCTGGAAGGCGCAGGCAGGCGCCCTGGAGAGAATTCACAGGGAGGCACAGGACAGAACGCTCCCAGGAACGAGGAAGCACCCCCAGAAAGGAGCGCTCTATGGGCTCCAGGCAGCCGAGGAAACGCGAACGTGAGCCCCGTGACTGCACTCCCACGTGCACCAACGCTGCCAGTGTGAGCAGAAGCGGAGCCCGCAGAGCGCCAGGCTGCGCCGGGAGATGCATCACGATGAAAAACTGCGCCAGAGCATGGCGGGAACTTTCCGAGAGGGCGTGTTGTTTCCAGGCGGTTCCACCTTCTAATATGAAACAGTCTTGGTTGATTTTCCTTGATACTACTTTATGCTCGGCCTGGTTGTTGGCAAGTAGCTGCCCGCGTCTGTACGCGCCCTTGATTAGTTTCCACTGCATGTGTTTTAACACAGTCCTCCTTTTTCCACGTTTATTTGGGCCAACCCTGTCTGCAAAGATCCAGTTTAATACAGATTTGAGTCTACGTGCTATAGCCTGGAAATGTACTAAAGACACTACAACATATTGCTGAAAGAATAGAATCTTTATTCTGAATGCAAAGCGGACACCTAGTAAAAAATTCTGGAATAATAAAACAAGCAAGGCTTATGTGCTCAGTTTTGGGGACGCTCCAATTTAAAGGCTTAGTCATTGTCACGGTGTAAGGTTTACCCATTGCCCCCATCACACAGATGTGGGATTGTTGAGAGCTGAGTGTCCTATGACCTCTTCTGCTGCCCAAGAACTTGGGGTGGGTGGTAACTGGAGAAATCAAAGTGATCAGCTGCAAAGAACGCTTCCATTGCTGGAGCTTGGTTGTGCGGGATTCTCCACGGAGGTCTTAAGGCAGAGACAAAAACAAGGACTTTGGGAGGCTCCTGTGAGCAGCCAAAAGGGTTTAGAGTCAGGCAGCCTCAGGTTACAAATCCAGTCCTGCAGGCTAGGAGTTGTGTAAGCTTAAAAAAGTGACTGCACTTCCAGGAACATCATTTCCCTACCTGCTCCTCCTTCTGACGGGTTTTCTGAGGACAATGGAATCCACACTCTGTGTCGAACACTTTTCTAATTAGCGATGTGCAGACACTGTTTATTTTACAGGAATAAAAATGCCAGAAGAACCCAAGTCATATTCATTTAAAGCAGGGTGACAAGTACACCAAAATCTGAAAAATCATCACTAAAGAACTTATCCATGTAACCAAAAACCATTGAAATAAAAGTAAACTATGGAAACAAAATTTAAAAGTAATAAAATTTAAAAGTCCAAAAAAAAAAAAAAAA</dnaseq> | <dnaseq>GTTCCTGAGAGCACAAGCACCCCCAAATGTGAAGTGCACTCGGACACACACACACACACACACGCACGCACACACAAGCACTCATGTTCTAAAGAGAGAGGTCTGAGTCCGAAGTTGCTGCTGCTGGGAGCTTGAGCTGAGATGGACTGGTCTTCATGGGCGCCCAAGGCGCTGGGTGCAGCTTTCCCCGAGACCCCCAGATGGAAAGGAGGGAAGGAGGAACCCCACACACTCGCCTTTTGCGAGAAGATCGGCGCGCACCCCAGAGTGCCCCAAGCCTTTGGAATCTGCCTGCTGAGCGGAGCGCGCGAGCGTGGTGGACAGGTCCCGAACTTGGCCAGCGGGCTTTCTTGGCAACTTGCTTTGCGCAGTTCTCCATGGAACCCTGGACCCACTGTGCTCCCGGCGCCTTGCCTTTTTTTTTCTTTTTCTTTCTCTCACTGTCTCTTTTTAAATTTATGAACTCGAAATGAAGCGGAAAGCAGATATGCGCGTCAGCATACTTTGGCGGACCTTTTAAAAATGGAACTGTCGGCTGCGGCTGGAAGGCGCAGGCAGGCGCCCTGGAGAGAATTCACAGGGAGGCACAGGACAGAACGCTCCCAGGAACGAGGAAGCACCCCCAGAAAGGAGCGCTCTATGGGCTCCAGGCAGCCGAGGAAACGCGAACGTGAGCCCCGTGACTGCACTCCCACGTGCACCAACGCTGCCAGTGTGAGCAGAAGCGGAGCCCGCAGAGCGCCAGGCTGCGCCGGGAGATGCATCACGATGAAAAACTGCGCCAGAGCATGGCGGGAACTTTCCGAGAGGGCGTGTTGTTTCCAGGCGGTTCCACCTTCTAATATGAAACAGTCTTGGTTGATTTTCCTTGATACTACTTTATGCTCGGCCTGGTTGTTGGCAAGTAGCTGCCCGCGTCTGTACGCGCCCTTGATTAGTTTCCACTGCATGTGTTTTAACACAGTCCTCCTTTTTCCACGTTTATTTGGGCCAACCCTGTCTGCAAAGATCCAGTTTAATACAGATTTGAGTCTACGTGCTATAGCCTGGAAATGTACTAAAGACACTACAACATATTGCTGAAAGAATAGAATCTTTATTCTGAATGCAAAGCGGACACCTAGTAAAAAATTCTGGAATAATAAAACAAGCAAGGCTTATGTGCTCAGTTTTGGGGACGCTCCAATTTAAAGGCTTAGTCATTGTCACGGTGTAAGGTTTACCCATTGCCCCCATCACACAGATGTGGGATTGTTGAGAGCTGAGTGTCCTATGACCTCTTCTGCTGCCCAAGAACTTGGGGTGGGTGGTAACTGGAGAAATCAAAGTGATCAGCTGCAAAGAACGCTTCCATTGCTGGAGCTTGGTTGTGCGGGATTCTCCACGGAGGTCTTAAGGCAGAGACAAAAACAAGGACTTTGGGAGGCTCCTGTGAGCAGCCAAAAGGGTTTAGAGTCAGGCAGCCTCAGGTTACAAATCCAGTCCTGCAGGCTAGGAGTTGTGTAAGCTTAAAAAAGTGACTGCACTTCCAGGAACATCATTTCCCTACCTGCTCCTCCTTCTGACGGGTTTTCTGAGGACAATGGAATCCACACTCTGTGTCGAACACTTTTCTAATTAGCGATGTGCAGACACTGTTTATTTTACAGGAATAAAAATGCCAGAAGAACCCAAGTCATATTCATTTAAAGCAGGGTGACAAGTACACCAAAATCTGAAAAATCATCACTAAAGAACTTATCCATGTAACCAAAAACCATTGAAATAAAAGTAAACTATGGAAACAAAATTTAAAAGTAATAAAATTTAAAAGTCCAAAAAAAAAAAAAAAA</dnaseq> | ||
Latest revision as of 08:48, 5 November 2018
Contents
Annotated Information
Approved Symbol
LINC00473
Approved Name
long intergenic non-protein coding RNA 473
Previous Symbols
C6orf176
Synonyms
bA142J11.1
Chromosome
6q27
RefSeq ID
NR_026860
OMIM ID
_
Ensembl ID
ENSG00000223414
pubmed IDs
22108211
Disease
Disease: non-small cell lung cancer (PMID:27374438)
Dysfunction type: expression
Description: The expression of C6orf176-TV1 or C6orf176-TV2 is down regulated in NSCLC and it is correlated with the grade of differentiation. It may act as a diagnosis indicator for NSCLC patients
Function
Function Mechanism: NA (PMID:27374438)
Biological Process: pathogenic process
Description: biomarker
Sequence
>gi|223634003|ref|NR_026860.1| Homo sapiens long intergenic non-protein coding RNA 473 (LINC00473), transcript variant 1, long non-coding RNA
000001 GTTCCTGAGA GCACAAGCAC CCCCAAATGT GAAGTGCACT CGGACACACA CACACACACA CACGCACGCA CACACAAGCA 000080
000081 CTCATGTTCT AAAGAGAGAG GTCTGAGTCC GAAGTTGCTG CTGCTGGGAG CTTGAGCTGA GATGGACTGG TCTTCATGGG 000160
000161 CGCCCAAGGC GCTGGGTGCA GCTTTCCCCG AGACCCCCAG ATGGAAAGGA GGGAAGGAGG AACCCCACAC ACTCGCCTTT 000240
000241 TGCGAGAAGA TCGGCGCGCA CCCCAGAGTG CCCCAAGCCT TTGGAATCTG CCTGCTGAGC GGAGCGCGCG AGCGTGGTGG 000320
000321 ACAGGTCCCG AACTTGGCCA GCGGGCTTTC TTGGCAACTT GCTTTGCGCA GTTCTCCATG GAACCCTGGA CCCACTGTGC 000400
000401 TCCCGGCGCC TTGCCTTTTT TTTTCTTTTT CTTTCTCTCA CTGTCTCTTT TTAAATTTAT GAACTCGAAA TGAAGCGGAA 000480
000481 AGCAGATATG CGCGTCAGCA TACTTTGGCG GACCTTTTAA AAATGGAACT GTCGGCTGCG GCTGGAAGGC GCAGGCAGGC 000560
000561 GCCCTGGAGA GAATTCACAG GGAGGCACAG GACAGAACGC TCCCAGGAAC GAGGAAGCAC CCCCAGAAAG GAGCGCTCTA 000640
000641 TGGGCTCCAG GCAGCCGAGG AAACGCGAAC GTGAGCCCCG TGACTGCACT CCCACGTGCA CCAACGCTGC CAGTGTGAGC 000720
000721 AGAAGCGGAG CCCGCAGAGC GCCAGGCTGC GCCGGGAGAT GCATCACGAT GAAAAACTGC GCCAGAGCAT GGCGGGAACT 000800
000801 TTCCGAGAGG GCGTGTTGTT TCCAGGCGGT TCCACCTTCT AATATGAAAC AGTCTTGGTT GATTTTCCTT GATACTACTT 000880
000881 TATGCTCGGC CTGGTTGTTG GCAAGTAGCT GCCCGCGTCT GTACGCGCCC TTGATTAGTT TCCACTGCAT GTGTTTTAAC 000960
000961 ACAGTCCTCC TTTTTCCACG TTTATTTGGG CCAACCCTGT CTGCAAAGAT CCAGTTTAAT ACAGATTTGA GTCTACGTGC 001040
001041 TATAGCCTGG AAATGTACTA AAGACACTAC AACATATTGC TGAAAGAATA GAATCTTTAT TCTGAATGCA AAGCGGACAC 001120
001121 CTAGTAAAAA ATTCTGGAAT AATAAAACAA GCAAGGCTTA TGTGCTCAGT TTTGGGGACG CTCCAATTTA AAGGCTTAGT 001200
001201 CATTGTCACG GTGTAAGGTT TACCCATTGC CCCCATCACA CAGATGTGGG ATTGTTGAGA GCTGAGTGTC CTATGACCTC 001280
001281 TTCTGCTGCC CAAGAACTTG GGGTGGGTGG TAACTGGAGA AATCAAAGTG ATCAGCTGCA AAGAACGCTT CCATTGCTGG 001360
001361 AGCTTGGTTG TGCGGGATTC TCCACGGAGG TCTTAAGGCA GAGACAAAAA CAAGGACTTT GGGAGGCTCC TGTGAGCAGC 001440
001441 CAAAAGGGTT TAGAGTCAGG CAGCCTCAGG TTACAAATCC AGTCCTGCAG GCTAGGAGTT GTGTAAGCTT AAAAAAGTGA 001520
001521 CTGCACTTCC AGGAACATCA TTTCCCTACC TGCTCCTCCT TCTGACGGGT TTTCTGAGGA CAATGGAATC CACACTCTGT 001600
001601 GTCGAACACT TTTCTAATTA GCGATGTGCA GACACTGTTT ATTTTACAGG AATAAAAATG CCAGAAGAAC CCAAGTCATA 001680
001681 TTCATTTAAA GCAGGGTGAC AAGTACACCA AAATCTGAAA AATCATCACT AAAGAACTTA TCCATGTAAC CAAAAACCAT 001760
001761 TGAAATAAAA GTAAACTATG GAAACAAAAT TTAAAAGTAA TAAAATTTAA AAGTCCAAAA AAAAAAAAAA AA
000081 CTCATGTTCT AAAGAGAGAG GTCTGAGTCC GAAGTTGCTG CTGCTGGGAG CTTGAGCTGA GATGGACTGG TCTTCATGGG 000160
000161 CGCCCAAGGC GCTGGGTGCA GCTTTCCCCG AGACCCCCAG ATGGAAAGGA GGGAAGGAGG AACCCCACAC ACTCGCCTTT 000240
000241 TGCGAGAAGA TCGGCGCGCA CCCCAGAGTG CCCCAAGCCT TTGGAATCTG CCTGCTGAGC GGAGCGCGCG AGCGTGGTGG 000320
000321 ACAGGTCCCG AACTTGGCCA GCGGGCTTTC TTGGCAACTT GCTTTGCGCA GTTCTCCATG GAACCCTGGA CCCACTGTGC 000400
000401 TCCCGGCGCC TTGCCTTTTT TTTTCTTTTT CTTTCTCTCA CTGTCTCTTT TTAAATTTAT GAACTCGAAA TGAAGCGGAA 000480
000481 AGCAGATATG CGCGTCAGCA TACTTTGGCG GACCTTTTAA AAATGGAACT GTCGGCTGCG GCTGGAAGGC GCAGGCAGGC 000560
000561 GCCCTGGAGA GAATTCACAG GGAGGCACAG GACAGAACGC TCCCAGGAAC GAGGAAGCAC CCCCAGAAAG GAGCGCTCTA 000640
000641 TGGGCTCCAG GCAGCCGAGG AAACGCGAAC GTGAGCCCCG TGACTGCACT CCCACGTGCA CCAACGCTGC CAGTGTGAGC 000720
000721 AGAAGCGGAG CCCGCAGAGC GCCAGGCTGC GCCGGGAGAT GCATCACGAT GAAAAACTGC GCCAGAGCAT GGCGGGAACT 000800
000801 TTCCGAGAGG GCGTGTTGTT TCCAGGCGGT TCCACCTTCT AATATGAAAC AGTCTTGGTT GATTTTCCTT GATACTACTT 000880
000881 TATGCTCGGC CTGGTTGTTG GCAAGTAGCT GCCCGCGTCT GTACGCGCCC TTGATTAGTT TCCACTGCAT GTGTTTTAAC 000960
000961 ACAGTCCTCC TTTTTCCACG TTTATTTGGG CCAACCCTGT CTGCAAAGAT CCAGTTTAAT ACAGATTTGA GTCTACGTGC 001040
001041 TATAGCCTGG AAATGTACTA AAGACACTAC AACATATTGC TGAAAGAATA GAATCTTTAT TCTGAATGCA AAGCGGACAC 001120
001121 CTAGTAAAAA ATTCTGGAAT AATAAAACAA GCAAGGCTTA TGTGCTCAGT TTTGGGGACG CTCCAATTTA AAGGCTTAGT 001200
001201 CATTGTCACG GTGTAAGGTT TACCCATTGC CCCCATCACA CAGATGTGGG ATTGTTGAGA GCTGAGTGTC CTATGACCTC 001280
001281 TTCTGCTGCC CAAGAACTTG GGGTGGGTGG TAACTGGAGA AATCAAAGTG ATCAGCTGCA AAGAACGCTT CCATTGCTGG 001360
001361 AGCTTGGTTG TGCGGGATTC TCCACGGAGG TCTTAAGGCA GAGACAAAAA CAAGGACTTT GGGAGGCTCC TGTGAGCAGC 001440
001441 CAAAAGGGTT TAGAGTCAGG CAGCCTCAGG TTACAAATCC AGTCCTGCAG GCTAGGAGTT GTGTAAGCTT AAAAAAGTGA 001520
001521 CTGCACTTCC AGGAACATCA TTTCCCTACC TGCTCCTCCT TCTGACGGGT TTTCTGAGGA CAATGGAATC CACACTCTGT 001600
001601 GTCGAACACT TTTCTAATTA GCGATGTGCA GACACTGTTT ATTTTACAGG AATAAAAATG CCAGAAGAAC CCAAGTCATA 001680
001681 TTCATTTAAA GCAGGGTGAC AAGTACACCA AAATCTGAAA AATCATCACT AAAGAACTTA TCCATGTAAC CAAAAACCAT 001760
001761 TGAAATAAAA GTAAACTATG GAAACAAAAT TTAAAAGTAA TAAAATTTAA AAGTCCAAAA AAAAAAAAAA AA