Difference between revisions of "CLRN1-AS1"
Chunlei Yu (talk | contribs) (→Sequence) |
Chunlei Yu (talk | contribs) |
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==Annotated Information== | ==Annotated Information== | ||
===Approved Symbol=== | ===Approved Symbol=== | ||
| − | CLRN1-AS1 | + | CLRN1-AS1:CLRN1 antisense RNA 1 |
| − | |||
| − | CLRN1 antisense RNA 1 | ||
===Previous Symbols=== | ===Previous Symbols=== | ||
CLRN1OS | CLRN1OS | ||
| Line 18: | Line 16: | ||
===pubmed IDs=== | ===pubmed IDs=== | ||
11524702 | 11524702 | ||
| + | ===Disease=== | ||
| + | * Usher syndrome type 3<ref name="ref1" /> | ||
| + | ==Labs working on this lncRNA== | ||
| + | * The Folkhälsan Institute of Genetics, Biomedicum Helsinki, University of Helsinki, Helsinki, Finland. <ref name="ref1" /> | ||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1">Joensuu T, Hamalainen R, Yuan B, Johnson C, Tegelberg S, Gasparini P, et al. Mutations in a novel gene with transmembrane domains underlie Usher syndrome type 3[J]. American journal of human genetics. 2001,69(4):673-84.</ref>(1) | ||
| + | </references> | ||
===Sequence=== | ===Sequence=== | ||
>gi|195947408|ref|NR_024066.1| Homo sapiens CLRN1 antisense RNA 1 (CLRN1-AS1), non-coding RNA | >gi|195947408|ref|NR_024066.1| Homo sapiens CLRN1 antisense RNA 1 (CLRN1-AS1), non-coding RNA | ||
<dnaseq>AAAAAATGATTTTCTTCTGTTGGCTTGGCATGATGAGAAACGGCTTCTGTGAGGGCGAGGTTCAAAAACAAGACCTTTGTGAGCAATGGGAAGGGACTGCCTCTTTGACTGCATTTATTACGGAAGCTGAACGGACAGCTCCCAGCTGAAAAGGCAACTTCACCATCGACGGTTCTCGCCAGGTTAAATGTCAGTAGATGAAGGCCTCATCATCACTCATACTTGGCTTTTCTCCTTTTCTGCTGCTTCTTCTCCCTAATTGGAAATCTTTGGACTAAGAATCTGTAAAACAAGTCTTTCAAACTGCCTTCAAGTATCTCCTCTGTGTCACTTGGTAACAAAGGTCGAAGATAACAGATGGAGTCCTCAGTGTAACTTGATAAATGTTTCCCTTCCTCAGCCTTTTGTCTGATTGGACATCTGGAAGGAGACAGGTGTTGCCTTTGTTACAGTGGTTCAAGAATGTCAGAATTGCAGTCACTACAATTCTCCTGGCTTTTCTCTCATGGTCCCCAAATGACTGCTGGAGTTTCAGCCATCATATCAGTGATCAAGGCAGCTGGATCCAGGCAGTAATCCAGACACTTGGAAGTCCCACCCAAGGACTTCTGCTCTTATCTCATTGGTCATCTTTGTCTGAAAGGAAAGCTGTGAAATACAGTATTATTAATAAGCACGTTGCTGGCTCCAGTAATATAGAGTCTTGTTAACAACAAAGAAGAGGAGAATGGAGATTGAGCAACCAGGAAGCAGTCTCAGCCACACCATCATATGGAGAAGTGCCTGTTTCCCATTCTGCCCGATTTTAAGTTTCCTGAGGCACCCCCAGCCATGCAGAACTCTCTGGTGCCTGGCCCACAGGAAGTTTTCACTAAATATTGAAATAAACTGAACTTAGATTAAACTTTGGTGTCTAACTTAGGAAAAACAACAAGAGTTCTACAAAACTATTTCTTCACAGGCTGTTGTAGCAGGGAGACCCTCAAGGGCGTCTACAATATCACCACAACTCTCATAGAGCTGCCTGTGAAGGATGACAAGAAGGAAGTAGGCTGAGACCCAAGTTCTGGGTCAGGGGACTAATGCTGTTGTCACCAAGAAGGGAAAGTCTGAAGCCAGGCCTGCTTAGCAGAGGTCTCCGTATAGTAGGGATCTCACTCTTTCAAGATGTAGGATCTCAACTGGTTAGCCAGCCCTCTGAGTGAAGCTGGTCAGTTGGGGCTGTGACAACATAGCACACTCAAAGGGGCAGACCCTTCTCAGCTCCAACAGATTGGTGTCATTGGAAAAGGTGGACCCAGTGTAGGCAGACTTTCCTAGAGAGTCCAGAAGTGACTGTGCAAGCCCAAAGCAATCCAAACAAATATTTGTGGACCACCAAGAACCTCTGGTATGAAGTAAATAATAAAGGCATTGAACAATAATAACCTGTCTGTATATCCACCAATGGGACCGATGGGCCACAGTGTGACATCTATCCTATTCATGTCATAAGGGAGATGAATTCTACTGTGGGACAGTCTGTGTGACTGCTCGTAGGAGATTATCCAATTCCTTTTGCTCTAATTTCATGGTCACCAAATTTCTGCTTGCTAACTTTGTTTTACAACAAACTTTAGAAAGGAGGTGATCTGAATAAGAGGATATATGTTTTTCAGTCTCTGGAAAGGGGTATTTCTTTGTATTGAGAAGCCAGAACTCTTGAGTGTGTTGAGCCTTGTAGAGATTGAACCACTCTGGGTCAGCTGACAAAATAAGATTCTGGTGCTGAAAAGCTGAGTATGTGACCATGATATTAACAGTGACCTAAGTTTGTGTGGCCCCCTTCGTTCTCCAGAAACCAACCAGTCAGCCTTCATTTTGTAAATGTAGCAGACACCATTTTGCTAGTGAATGAGGTTAAATCTTTAGCCTTGTCATTGGTTCGGCTTTGTAATTTAAAACTCTCTTATTTTACCCTCTGATTTTAAATCCCCAGATTTTCCTTTCTGTGTCCTTTGCCCCCTGAAGTTTCCATCTGTCTAGCAACTAAGCACTGTTTGGGT</dnaseq> | <dnaseq>AAAAAATGATTTTCTTCTGTTGGCTTGGCATGATGAGAAACGGCTTCTGTGAGGGCGAGGTTCAAAAACAAGACCTTTGTGAGCAATGGGAAGGGACTGCCTCTTTGACTGCATTTATTACGGAAGCTGAACGGACAGCTCCCAGCTGAAAAGGCAACTTCACCATCGACGGTTCTCGCCAGGTTAAATGTCAGTAGATGAAGGCCTCATCATCACTCATACTTGGCTTTTCTCCTTTTCTGCTGCTTCTTCTCCCTAATTGGAAATCTTTGGACTAAGAATCTGTAAAACAAGTCTTTCAAACTGCCTTCAAGTATCTCCTCTGTGTCACTTGGTAACAAAGGTCGAAGATAACAGATGGAGTCCTCAGTGTAACTTGATAAATGTTTCCCTTCCTCAGCCTTTTGTCTGATTGGACATCTGGAAGGAGACAGGTGTTGCCTTTGTTACAGTGGTTCAAGAATGTCAGAATTGCAGTCACTACAATTCTCCTGGCTTTTCTCTCATGGTCCCCAAATGACTGCTGGAGTTTCAGCCATCATATCAGTGATCAAGGCAGCTGGATCCAGGCAGTAATCCAGACACTTGGAAGTCCCACCCAAGGACTTCTGCTCTTATCTCATTGGTCATCTTTGTCTGAAAGGAAAGCTGTGAAATACAGTATTATTAATAAGCACGTTGCTGGCTCCAGTAATATAGAGTCTTGTTAACAACAAAGAAGAGGAGAATGGAGATTGAGCAACCAGGAAGCAGTCTCAGCCACACCATCATATGGAGAAGTGCCTGTTTCCCATTCTGCCCGATTTTAAGTTTCCTGAGGCACCCCCAGCCATGCAGAACTCTCTGGTGCCTGGCCCACAGGAAGTTTTCACTAAATATTGAAATAAACTGAACTTAGATTAAACTTTGGTGTCTAACTTAGGAAAAACAACAAGAGTTCTACAAAACTATTTCTTCACAGGCTGTTGTAGCAGGGAGACCCTCAAGGGCGTCTACAATATCACCACAACTCTCATAGAGCTGCCTGTGAAGGATGACAAGAAGGAAGTAGGCTGAGACCCAAGTTCTGGGTCAGGGGACTAATGCTGTTGTCACCAAGAAGGGAAAGTCTGAAGCCAGGCCTGCTTAGCAGAGGTCTCCGTATAGTAGGGATCTCACTCTTTCAAGATGTAGGATCTCAACTGGTTAGCCAGCCCTCTGAGTGAAGCTGGTCAGTTGGGGCTGTGACAACATAGCACACTCAAAGGGGCAGACCCTTCTCAGCTCCAACAGATTGGTGTCATTGGAAAAGGTGGACCCAGTGTAGGCAGACTTTCCTAGAGAGTCCAGAAGTGACTGTGCAAGCCCAAAGCAATCCAAACAAATATTTGTGGACCACCAAGAACCTCTGGTATGAAGTAAATAATAAAGGCATTGAACAATAATAACCTGTCTGTATATCCACCAATGGGACCGATGGGCCACAGTGTGACATCTATCCTATTCATGTCATAAGGGAGATGAATTCTACTGTGGGACAGTCTGTGTGACTGCTCGTAGGAGATTATCCAATTCCTTTTGCTCTAATTTCATGGTCACCAAATTTCTGCTTGCTAACTTTGTTTTACAACAAACTTTAGAAAGGAGGTGATCTGAATAAGAGGATATATGTTTTTCAGTCTCTGGAAAGGGGTATTTCTTTGTATTGAGAAGCCAGAACTCTTGAGTGTGTTGAGCCTTGTAGAGATTGAACCACTCTGGGTCAGCTGACAAAATAAGATTCTGGTGCTGAAAAGCTGAGTATGTGACCATGATATTAACAGTGACCTAAGTTTGTGTGGCCCCCTTCGTTCTCCAGAAACCAACCAGTCAGCCTTCATTTTGTAAATGTAGCAGACACCATTTTGCTAGTGAATGAGGTTAAATCTTTAGCCTTGTCATTGGTTCGGCTTTGTAATTTAAAACTCTCTTATTTTACCCTCTGATTTTAAATCCCCAGATTTTCCTTTCTGTGTCCTTTGCCCCCTGAAGTTTCCATCTGTCTAGCAACTAAGCACTGTTTGGGT</dnaseq> | ||
Latest revision as of 04:03, 1 July 2016
Contents
Annotated Information
Approved Symbol
CLRN1-AS1:CLRN1 antisense RNA 1
Previous Symbols
CLRN1OS
Synonyms
UCRP
Chromosome
3q25.1
RefSeq ID
NR_024066
OMIM ID
_
Ensembl ID
ENSG00000239265
pubmed IDs
11524702
Disease
- Usher syndrome type 3[1]
Labs working on this lncRNA
- The Folkhälsan Institute of Genetics, Biomedicum Helsinki, University of Helsinki, Helsinki, Finland. [1]
References
Sequence
>gi|195947408|ref|NR_024066.1| Homo sapiens CLRN1 antisense RNA 1 (CLRN1-AS1), non-coding RNA
000001 AAAAAATGAT TTTCTTCTGT TGGCTTGGCA TGATGAGAAA CGGCTTCTGT GAGGGCGAGG TTCAAAAACA AGACCTTTGT 000080
000081 GAGCAATGGG AAGGGACTGC CTCTTTGACT GCATTTATTA CGGAAGCTGA ACGGACAGCT CCCAGCTGAA AAGGCAACTT 000160
000161 CACCATCGAC GGTTCTCGCC AGGTTAAATG TCAGTAGATG AAGGCCTCAT CATCACTCAT ACTTGGCTTT TCTCCTTTTC 000240
000241 TGCTGCTTCT TCTCCCTAAT TGGAAATCTT TGGACTAAGA ATCTGTAAAA CAAGTCTTTC AAACTGCCTT CAAGTATCTC 000320
000321 CTCTGTGTCA CTTGGTAACA AAGGTCGAAG ATAACAGATG GAGTCCTCAG TGTAACTTGA TAAATGTTTC CCTTCCTCAG 000400
000401 CCTTTTGTCT GATTGGACAT CTGGAAGGAG ACAGGTGTTG CCTTTGTTAC AGTGGTTCAA GAATGTCAGA ATTGCAGTCA 000480
000481 CTACAATTCT CCTGGCTTTT CTCTCATGGT CCCCAAATGA CTGCTGGAGT TTCAGCCATC ATATCAGTGA TCAAGGCAGC 000560
000561 TGGATCCAGG CAGTAATCCA GACACTTGGA AGTCCCACCC AAGGACTTCT GCTCTTATCT CATTGGTCAT CTTTGTCTGA 000640
000641 AAGGAAAGCT GTGAAATACA GTATTATTAA TAAGCACGTT GCTGGCTCCA GTAATATAGA GTCTTGTTAA CAACAAAGAA 000720
000721 GAGGAGAATG GAGATTGAGC AACCAGGAAG CAGTCTCAGC CACACCATCA TATGGAGAAG TGCCTGTTTC CCATTCTGCC 000800
000801 CGATTTTAAG TTTCCTGAGG CACCCCCAGC CATGCAGAAC TCTCTGGTGC CTGGCCCACA GGAAGTTTTC ACTAAATATT 000880
000881 GAAATAAACT GAACTTAGAT TAAACTTTGG TGTCTAACTT AGGAAAAACA ACAAGAGTTC TACAAAACTA TTTCTTCACA 000960
000961 GGCTGTTGTA GCAGGGAGAC CCTCAAGGGC GTCTACAATA TCACCACAAC TCTCATAGAG CTGCCTGTGA AGGATGACAA 001040
001041 GAAGGAAGTA GGCTGAGACC CAAGTTCTGG GTCAGGGGAC TAATGCTGTT GTCACCAAGA AGGGAAAGTC TGAAGCCAGG 001120
001121 CCTGCTTAGC AGAGGTCTCC GTATAGTAGG GATCTCACTC TTTCAAGATG TAGGATCTCA ACTGGTTAGC CAGCCCTCTG 001200
001201 AGTGAAGCTG GTCAGTTGGG GCTGTGACAA CATAGCACAC TCAAAGGGGC AGACCCTTCT CAGCTCCAAC AGATTGGTGT 001280
001281 CATTGGAAAA GGTGGACCCA GTGTAGGCAG ACTTTCCTAG AGAGTCCAGA AGTGACTGTG CAAGCCCAAA GCAATCCAAA 001360
001361 CAAATATTTG TGGACCACCA AGAACCTCTG GTATGAAGTA AATAATAAAG GCATTGAACA ATAATAACCT GTCTGTATAT 001440
001441 CCACCAATGG GACCGATGGG CCACAGTGTG ACATCTATCC TATTCATGTC ATAAGGGAGA TGAATTCTAC TGTGGGACAG 001520
001521 TCTGTGTGAC TGCTCGTAGG AGATTATCCA ATTCCTTTTG CTCTAATTTC ATGGTCACCA AATTTCTGCT TGCTAACTTT 001600
001601 GTTTTACAAC AAACTTTAGA AAGGAGGTGA TCTGAATAAG AGGATATATG TTTTTCAGTC TCTGGAAAGG GGTATTTCTT 001680
001681 TGTATTGAGA AGCCAGAACT CTTGAGTGTG TTGAGCCTTG TAGAGATTGA ACCACTCTGG GTCAGCTGAC AAAATAAGAT 001760
001761 TCTGGTGCTG AAAAGCTGAG TATGTGACCA TGATATTAAC AGTGACCTAA GTTTGTGTGG CCCCCTTCGT TCTCCAGAAA 001840
001841 CCAACCAGTC AGCCTTCATT TTGTAAATGT AGCAGACACC ATTTTGCTAG TGAATGAGGT TAAATCTTTA GCCTTGTCAT 001920
001921 TGGTTCGGCT TTGTAATTTA AAACTCTCTT ATTTTACCCT CTGATTTTAA ATCCCCAGAT TTTCCTTTCT GTGTCCTTTG 002000
002001 CCCCCTGAAG TTTCCATCTG TCTAGCAACT AAGCACTGTT TGGGT
000081 GAGCAATGGG AAGGGACTGC CTCTTTGACT GCATTTATTA CGGAAGCTGA ACGGACAGCT CCCAGCTGAA AAGGCAACTT 000160
000161 CACCATCGAC GGTTCTCGCC AGGTTAAATG TCAGTAGATG AAGGCCTCAT CATCACTCAT ACTTGGCTTT TCTCCTTTTC 000240
000241 TGCTGCTTCT TCTCCCTAAT TGGAAATCTT TGGACTAAGA ATCTGTAAAA CAAGTCTTTC AAACTGCCTT CAAGTATCTC 000320
000321 CTCTGTGTCA CTTGGTAACA AAGGTCGAAG ATAACAGATG GAGTCCTCAG TGTAACTTGA TAAATGTTTC CCTTCCTCAG 000400
000401 CCTTTTGTCT GATTGGACAT CTGGAAGGAG ACAGGTGTTG CCTTTGTTAC AGTGGTTCAA GAATGTCAGA ATTGCAGTCA 000480
000481 CTACAATTCT CCTGGCTTTT CTCTCATGGT CCCCAAATGA CTGCTGGAGT TTCAGCCATC ATATCAGTGA TCAAGGCAGC 000560
000561 TGGATCCAGG CAGTAATCCA GACACTTGGA AGTCCCACCC AAGGACTTCT GCTCTTATCT CATTGGTCAT CTTTGTCTGA 000640
000641 AAGGAAAGCT GTGAAATACA GTATTATTAA TAAGCACGTT GCTGGCTCCA GTAATATAGA GTCTTGTTAA CAACAAAGAA 000720
000721 GAGGAGAATG GAGATTGAGC AACCAGGAAG CAGTCTCAGC CACACCATCA TATGGAGAAG TGCCTGTTTC CCATTCTGCC 000800
000801 CGATTTTAAG TTTCCTGAGG CACCCCCAGC CATGCAGAAC TCTCTGGTGC CTGGCCCACA GGAAGTTTTC ACTAAATATT 000880
000881 GAAATAAACT GAACTTAGAT TAAACTTTGG TGTCTAACTT AGGAAAAACA ACAAGAGTTC TACAAAACTA TTTCTTCACA 000960
000961 GGCTGTTGTA GCAGGGAGAC CCTCAAGGGC GTCTACAATA TCACCACAAC TCTCATAGAG CTGCCTGTGA AGGATGACAA 001040
001041 GAAGGAAGTA GGCTGAGACC CAAGTTCTGG GTCAGGGGAC TAATGCTGTT GTCACCAAGA AGGGAAAGTC TGAAGCCAGG 001120
001121 CCTGCTTAGC AGAGGTCTCC GTATAGTAGG GATCTCACTC TTTCAAGATG TAGGATCTCA ACTGGTTAGC CAGCCCTCTG 001200
001201 AGTGAAGCTG GTCAGTTGGG GCTGTGACAA CATAGCACAC TCAAAGGGGC AGACCCTTCT CAGCTCCAAC AGATTGGTGT 001280
001281 CATTGGAAAA GGTGGACCCA GTGTAGGCAG ACTTTCCTAG AGAGTCCAGA AGTGACTGTG CAAGCCCAAA GCAATCCAAA 001360
001361 CAAATATTTG TGGACCACCA AGAACCTCTG GTATGAAGTA AATAATAAAG GCATTGAACA ATAATAACCT GTCTGTATAT 001440
001441 CCACCAATGG GACCGATGGG CCACAGTGTG ACATCTATCC TATTCATGTC ATAAGGGAGA TGAATTCTAC TGTGGGACAG 001520
001521 TCTGTGTGAC TGCTCGTAGG AGATTATCCA ATTCCTTTTG CTCTAATTTC ATGGTCACCA AATTTCTGCT TGCTAACTTT 001600
001601 GTTTTACAAC AAACTTTAGA AAGGAGGTGA TCTGAATAAG AGGATATATG TTTTTCAGTC TCTGGAAAGG GGTATTTCTT 001680
001681 TGTATTGAGA AGCCAGAACT CTTGAGTGTG TTGAGCCTTG TAGAGATTGA ACCACTCTGG GTCAGCTGAC AAAATAAGAT 001760
001761 TCTGGTGCTG AAAAGCTGAG TATGTGACCA TGATATTAAC AGTGACCTAA GTTTGTGTGG CCCCCTTCGT TCTCCAGAAA 001840
001841 CCAACCAGTC AGCCTTCATT TTGTAAATGT AGCAGACACC ATTTTGCTAG TGAATGAGGT TAAATCTTTA GCCTTGTCAT 001920
001921 TGGTTCGGCT TTGTAATTTA AAACTCTCTT ATTTTACCCT CTGATTTTAA ATCCCCAGAT TTTCCTTTCT GTGTCCTTTG 002000
002001 CCCCCTGAAG TTTCCATCTG TCTAGCAACT AAGCACTGTT TGGGT
