Difference between revisions of "LINC01296"
Chunlei Yu (talk | contribs) (Created page with "==Annotated Information== ===Approved Symbol=== LINC01296 ===Approved Name=== long intergenic non-protein coding RNA 1296 ===Previous Symbols=== _ ===Synonyms=== FLJ39632 ===C...") |
Chunlei Yu (talk | contribs) |
||
| Line 16: | Line 16: | ||
===Ensembl ID=== | ===Ensembl ID=== | ||
ENSG00000244306 | ENSG00000244306 | ||
| + | ===Expression=== | ||
| + | LINC01296 overexpression was an independent predictor for patients' prognosis in the test datasets (GSE24549, GSE24550) (P = 0.001) and an independent validation series (GSE39582) (P = 0.027).<ref name="ref1" /> | ||
| + | ===Disease=== | ||
| + | LINC01296 could be a novel prognosis biomarker for the diagnosis of Colorectal cancer (CRC). <ref name="ref1" /> | ||
===pubmed IDs=== | ===pubmed IDs=== | ||
25894381 | 25894381 | ||
| − | ===Sequence | + | |
| + | ==Labs working on this lncRNA== | ||
| + | * Shanghai Children's Hospital, Shanghai Institute of Medical Genetics, Shanghai Jiao Tong University School of Medicine, 24/1400 West Beijing Rd., Shanghai, 200040, China.<ref name="ref1" /> | ||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1">Qiu JJ, Yan JB. Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer[J]. Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine. 2015,36(9):7175-83.</ref>(1) | ||
| + | </references> | ||
| + | ==Sequence== | ||
>gi|659668003|ref|NR_122112.1| Homo sapiens long intergenic non-protein coding RNA 1296 (LINC01296), transcript variant 2, long non-coding RNA | >gi|659668003|ref|NR_122112.1| Homo sapiens long intergenic non-protein coding RNA 1296 (LINC01296), transcript variant 2, long non-coding RNA | ||
<dnaseq>CCCTGCAGCAGCAGCGGCGTGGTCAGAGCGAGCTTCGGAGAAGCAGTGGTGGGTTCCATGTGATGGTGGAGTAGGAGGCAGGTCTCCGCGGTTCATCTGTGTTGCTCTAAATGACACTGTTTCATTATTTTGATGGCTGGAGAATATTTCCTAGTGTATGTATATGAGAGTTTCTTGATCTCTTTATCTGTGGATGAACAGCTACTTTGAAACATATGATACATTTGTGTTAAGGCTAGTCACCCTGCTGTGGAATAGAAGGCCAGAATTGATCAGTCTCATCTGAGAGTAACTTTGTACCCATCACTGATTCCTTCTGAGACTGCCTCCACTTCCCCAGCAGCCTCTGGTTTCTTCATGTGGCTGCAGATGGCAGGATTTCCCAAAGGTTTCTGGCTGAAACATATTCCGTGGTGTATCTGTACAGCAGTTTCCTCATCCCTGCAGCTGTGTTTGAACAGGTTCAACAGTATGGCTCCAAAGGATGAAATTTCATTCTGATTTTCTGGCTGAAGACTATTCTCTTTGTGTATGTCCACCACAGTTACTTTATCCCTTCATCTGTGGATGGGCAGTCTCGCTGTATTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGGAAAGAAAAAAGAAGAAAACAAACCTCCATACGAGAATGGGTCTAAAGGAACTTCCCAAACCTCCATGATTTTGCAGGAAACAAGATAAAGCTCCAGGCCAGGAGCCCCAACTGGCTGGTGGAGGATGTCTTGCTCCTCAGCAGCTGGGATTTGTAAGTATTTGTAGGAACATGGAACAGATCAGTGGCTGACAGGCCCAGGAAGCAGACAGTCCCCTTCCCATAGGTCACCAGCTTCACTTCCCCTTCCTGCACCCCATCCTGATTTGAGGGAGCCCAGGATGACAAAGAGGGAGTAGTTGAGCAAGGTATGGAGTGGCAGCCTCTACAGGAGCTCAAAGGATGCATTTGTCCATCTGCCCTGGGCTCAGCTTCCACACTCAGAGTCACTCACATCCCTCCACCGTCGCCACAGCTCACCTGTGTGCCCACACGGCCAAGGTCACACTGACCCCAAACGCACACTGTTTCAACTCTCAGCACTTCACTGTCACACTCGCGTGTGTACACACATGCTTTCTAATTTCCACAGCCACATGGATGCTCACACACTCACACCTTTGCACACACACACAAGCTGGCTCACAGACACACTGGGGGCCCAGATCCTGGTCATTCCCCACAGGTCTTAATAAAGGTTCATGGAAGGAAACCTGTTTCCTAAGGTAGGGTGGGAGTGTGTGTGAGTGT</dnaseq> | <dnaseq>CCCTGCAGCAGCAGCGGCGTGGTCAGAGCGAGCTTCGGAGAAGCAGTGGTGGGTTCCATGTGATGGTGGAGTAGGAGGCAGGTCTCCGCGGTTCATCTGTGTTGCTCTAAATGACACTGTTTCATTATTTTGATGGCTGGAGAATATTTCCTAGTGTATGTATATGAGAGTTTCTTGATCTCTTTATCTGTGGATGAACAGCTACTTTGAAACATATGATACATTTGTGTTAAGGCTAGTCACCCTGCTGTGGAATAGAAGGCCAGAATTGATCAGTCTCATCTGAGAGTAACTTTGTACCCATCACTGATTCCTTCTGAGACTGCCTCCACTTCCCCAGCAGCCTCTGGTTTCTTCATGTGGCTGCAGATGGCAGGATTTCCCAAAGGTTTCTGGCTGAAACATATTCCGTGGTGTATCTGTACAGCAGTTTCCTCATCCCTGCAGCTGTGTTTGAACAGGTTCAACAGTATGGCTCCAAAGGATGAAATTTCATTCTGATTTTCTGGCTGAAGACTATTCTCTTTGTGTATGTCCACCACAGTTACTTTATCCCTTCATCTGTGGATGGGCAGTCTCGCTGTATTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGGAAAGAAAAAAGAAGAAAACAAACCTCCATACGAGAATGGGTCTAAAGGAACTTCCCAAACCTCCATGATTTTGCAGGAAACAAGATAAAGCTCCAGGCCAGGAGCCCCAACTGGCTGGTGGAGGATGTCTTGCTCCTCAGCAGCTGGGATTTGTAAGTATTTGTAGGAACATGGAACAGATCAGTGGCTGACAGGCCCAGGAAGCAGACAGTCCCCTTCCCATAGGTCACCAGCTTCACTTCCCCTTCCTGCACCCCATCCTGATTTGAGGGAGCCCAGGATGACAAAGAGGGAGTAGTTGAGCAAGGTATGGAGTGGCAGCCTCTACAGGAGCTCAAAGGATGCATTTGTCCATCTGCCCTGGGCTCAGCTTCCACACTCAGAGTCACTCACATCCCTCCACCGTCGCCACAGCTCACCTGTGTGCCCACACGGCCAAGGTCACACTGACCCCAAACGCACACTGTTTCAACTCTCAGCACTTCACTGTCACACTCGCGTGTGTACACACATGCTTTCTAATTTCCACAGCCACATGGATGCTCACACACTCACACCTTTGCACACACACACAAGCTGGCTCACAGACACACTGGGGGCCCAGATCCTGGTCATTCCCCACAGGTCTTAATAAAGGTTCATGGAAGGAAACCTGTTTCCTAAGGTAGGGTGGGAGTGTGTGTGAGTGT</dnaseq> | ||
Latest revision as of 09:06, 1 July 2016
Contents
Annotated Information
Approved Symbol
LINC01296
Approved Name
long intergenic non-protein coding RNA 1296
Previous Symbols
_
Synonyms
FLJ39632
Chromosome
14q11.2
RefSeq ID
NR_122112
OMIM ID
_
Ensembl ID
ENSG00000244306
Expression
LINC01296 overexpression was an independent predictor for patients' prognosis in the test datasets (GSE24549, GSE24550) (P = 0.001) and an independent validation series (GSE39582) (P = 0.027).[1]
Disease
LINC01296 could be a novel prognosis biomarker for the diagnosis of Colorectal cancer (CRC). [1]
pubmed IDs
25894381
Labs working on this lncRNA
- Shanghai Children's Hospital, Shanghai Institute of Medical Genetics, Shanghai Jiao Tong University School of Medicine, 24/1400 West Beijing Rd., Shanghai, 200040, China.[1]
References
Sequence
>gi|659668003|ref|NR_122112.1| Homo sapiens long intergenic non-protein coding RNA 1296 (LINC01296), transcript variant 2, long non-coding RNA
000001 CCCTGCAGCA GCAGCGGCGT GGTCAGAGCG AGCTTCGGAG AAGCAGTGGT GGGTTCCATG TGATGGTGGA GTAGGAGGCA 000080
000081 GGTCTCCGCG GTTCATCTGT GTTGCTCTAA ATGACACTGT TTCATTATTT TGATGGCTGG AGAATATTTC CTAGTGTATG 000160
000161 TATATGAGAG TTTCTTGATC TCTTTATCTG TGGATGAACA GCTACTTTGA AACATATGAT ACATTTGTGT TAAGGCTAGT 000240
000241 CACCCTGCTG TGGAATAGAA GGCCAGAATT GATCAGTCTC ATCTGAGAGT AACTTTGTAC CCATCACTGA TTCCTTCTGA 000320
000321 GACTGCCTCC ACTTCCCCAG CAGCCTCTGG TTTCTTCATG TGGCTGCAGA TGGCAGGATT TCCCAAAGGT TTCTGGCTGA 000400
000401 AACATATTCC GTGGTGTATC TGTACAGCAG TTTCCTCATC CCTGCAGCTG TGTTTGAACA GGTTCAACAG TATGGCTCCA 000480
000481 AAGGATGAAA TTTCATTCTG ATTTTCTGGC TGAAGACTAT TCTCTTTGTG TATGTCCACC ACAGTTACTT TATCCCTTCA 000560
000561 TCTGTGGATG GGCAGTCTCG CTGTATTGCC CAGGCTGGAG TGCAGTGGCA TGATCTCAGC TCACTGCAAG CTCTGCTTCC 000640
000641 TGGGTTCACG CCATTCTCCT GCCTCAGCCT CCTGAGTAGC TGGGATTACA GGCACCCGCC ACCACGCCCA GGAAAGAAAA 000720
000721 AAGAAGAAAA CAAACCTCCA TACGAGAATG GGTCTAAAGG AACTTCCCAA ACCTCCATGA TTTTGCAGGA AACAAGATAA 000800
000801 AGCTCCAGGC CAGGAGCCCC AACTGGCTGG TGGAGGATGT CTTGCTCCTC AGCAGCTGGG ATTTGTAAGT ATTTGTAGGA 000880
000881 ACATGGAACA GATCAGTGGC TGACAGGCCC AGGAAGCAGA CAGTCCCCTT CCCATAGGTC ACCAGCTTCA CTTCCCCTTC 000960
000961 CTGCACCCCA TCCTGATTTG AGGGAGCCCA GGATGACAAA GAGGGAGTAG TTGAGCAAGG TATGGAGTGG CAGCCTCTAC 001040
001041 AGGAGCTCAA AGGATGCATT TGTCCATCTG CCCTGGGCTC AGCTTCCACA CTCAGAGTCA CTCACATCCC TCCACCGTCG 001120
001121 CCACAGCTCA CCTGTGTGCC CACACGGCCA AGGTCACACT GACCCCAAAC GCACACTGTT TCAACTCTCA GCACTTCACT 001200
001201 GTCACACTCG CGTGTGTACA CACATGCTTT CTAATTTCCA CAGCCACATG GATGCTCACA CACTCACACC TTTGCACACA 001280
001281 CACACAAGCT GGCTCACAGA CACACTGGGG GCCCAGATCC TGGTCATTCC CCACAGGTCT TAATAAAGGT TCATGGAAGG 001360
001361 AAACCTGTTT CCTAAGGTAG GGTGGGAGTG TGTGTGAGTG T
000081 GGTCTCCGCG GTTCATCTGT GTTGCTCTAA ATGACACTGT TTCATTATTT TGATGGCTGG AGAATATTTC CTAGTGTATG 000160
000161 TATATGAGAG TTTCTTGATC TCTTTATCTG TGGATGAACA GCTACTTTGA AACATATGAT ACATTTGTGT TAAGGCTAGT 000240
000241 CACCCTGCTG TGGAATAGAA GGCCAGAATT GATCAGTCTC ATCTGAGAGT AACTTTGTAC CCATCACTGA TTCCTTCTGA 000320
000321 GACTGCCTCC ACTTCCCCAG CAGCCTCTGG TTTCTTCATG TGGCTGCAGA TGGCAGGATT TCCCAAAGGT TTCTGGCTGA 000400
000401 AACATATTCC GTGGTGTATC TGTACAGCAG TTTCCTCATC CCTGCAGCTG TGTTTGAACA GGTTCAACAG TATGGCTCCA 000480
000481 AAGGATGAAA TTTCATTCTG ATTTTCTGGC TGAAGACTAT TCTCTTTGTG TATGTCCACC ACAGTTACTT TATCCCTTCA 000560
000561 TCTGTGGATG GGCAGTCTCG CTGTATTGCC CAGGCTGGAG TGCAGTGGCA TGATCTCAGC TCACTGCAAG CTCTGCTTCC 000640
000641 TGGGTTCACG CCATTCTCCT GCCTCAGCCT CCTGAGTAGC TGGGATTACA GGCACCCGCC ACCACGCCCA GGAAAGAAAA 000720
000721 AAGAAGAAAA CAAACCTCCA TACGAGAATG GGTCTAAAGG AACTTCCCAA ACCTCCATGA TTTTGCAGGA AACAAGATAA 000800
000801 AGCTCCAGGC CAGGAGCCCC AACTGGCTGG TGGAGGATGT CTTGCTCCTC AGCAGCTGGG ATTTGTAAGT ATTTGTAGGA 000880
000881 ACATGGAACA GATCAGTGGC TGACAGGCCC AGGAAGCAGA CAGTCCCCTT CCCATAGGTC ACCAGCTTCA CTTCCCCTTC 000960
000961 CTGCACCCCA TCCTGATTTG AGGGAGCCCA GGATGACAAA GAGGGAGTAG TTGAGCAAGG TATGGAGTGG CAGCCTCTAC 001040
001041 AGGAGCTCAA AGGATGCATT TGTCCATCTG CCCTGGGCTC AGCTTCCACA CTCAGAGTCA CTCACATCCC TCCACCGTCG 001120
001121 CCACAGCTCA CCTGTGTGCC CACACGGCCA AGGTCACACT GACCCCAAAC GCACACTGTT TCAACTCTCA GCACTTCACT 001200
001201 GTCACACTCG CGTGTGTACA CACATGCTTT CTAATTTCCA CAGCCACATG GATGCTCACA CACTCACACC TTTGCACACA 001280
001281 CACACAAGCT GGCTCACAGA CACACTGGGG GCCCAGATCC TGGTCATTCC CCACAGGTCT TAATAAAGGT TCATGGAAGG 001360
001361 AAACCTGTTT CCTAAGGTAG GGTGGGAGTG TGTGTGAGTG T
