Difference between revisions of "ENST00000604849.1"
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Spasm<ref name="ref1" /> | Spasm<ref name="ref1" /> | ||
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| + | ===PREVIOUS SYMBOLS & NAMES=== | ||
| + | LINC01155, "long intergenic non-protein coding RNA 1155". | ||
===Function=== | ===Function=== | ||
Mutation of KANTR in mouse causes tremors and spastic movements, which suggests a role in neurological development or function<ref name="ref1" />. | Mutation of KANTR in mouse causes tremors and spastic movements, which suggests a role in neurological development or function<ref name="ref1" />. | ||
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==Labs working on this lncRNA== | ==Labs working on this lncRNA== | ||
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==References== | ==References== | ||
<references> | <references> | ||
| − | <ref name="ref1" | + | <ref name="ref1">Sauvageau M, Goff LA, Lodato S, Bonev B, Groff AF, Gerhardinger C, et al. Multiple knockout mouse models reveal lincRNAs are required for life and brain development[J]. eLife. 2013,2:e01749.</ref>(1) |
</references> | </references> | ||
Latest revision as of 11:43, 30 June 2016
KANTR encoding a functional long non-coding RNA thought to play a role in neurological development or function.
Contents
Annotated Information
Name
This gene is thought to produce a functional long non-coding RNA. Mutation of this locus in mouse causes tremors and spastic movements, suggesting a role for this gene in neurological development or function(HGNC nomenclature).
Spasm[1]
PREVIOUS SYMBOLS & NAMES
LINC01155, "long intergenic non-protein coding RNA 1155".
Function
Mutation of KANTR in mouse causes tremors and spastic movements, which suggests a role in neurological development or function[1].
Labs working on this lncRNA
Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, United States[1]
References
Basic Information
| Transcript ID |
ENST00000604849.1 |
| Source |
Gencode19 |
| Same with |
NONHSAT137141,KANTR |
| Classification |
intergenic |
| Length |
1196 nt |
| Genomic location |
chrX+:53123371..53172633 |
| Exon number |
3 |
| Exons |
53123371..53123466,53171030..53171276,53171781..53172633 |
| Genome context |
|
| Sequence |
000001 GGGTTCCGTC CAGCGTATCC TTCAGATCTT GCTGTAGGCC TCTGGTGTCT GTGCGCGCGC GGCAGGGGCG GCGGCGGCGA 000080
000081 CGGCCGGAGG TGTACGGTGT AAATCCAAAC CGCTTCCAAC TCAAGGCAAG TAACAGCCCA CGGTGTTCTG GCAGGAAAAC 000160 000161 ATCAGCTAAG AAAGGAAACT GGGTCCTATG GCTTGGACTT TCCAACTCTG ACAGACCGGC AGGACAGAAA CAACTGGTTC 000240 000241 AGGAGCCCTT GCCAGCCTCT AGAGAAATCC CAGAACACTC AGCCCTGATG ACACATTAAT ACCCTGCACA TATTGGAGAC 000320 000321 TGCTGACCAC GCATACTCAC CAACCACCAC TTCTGGCCAC AAATTTCTTT TTGAAGGCTT ATTCCAGTTT TGTGAGGCTA 000400 000401 GCATGAGGTG TATGCATTTG CCAGGGGCAA ATTTATACTG CTGAATTAAC CCATGCAACA AATGCTGCAC ATCTGCTCGC 000480 000481 AGTCCATTTA GAGGCATTTG CGGTAGACAA TGGAGGGGCC AGACTCATCA TACATACCTG ATGGCTAACC CACATGCTTG 000560 000561 CAGTCCATTT AGAGGCATTT GCAGTGGATG ATGGAGGGGC CACATACCTA ATTGCTAATC CACATCTGCT GGAAGGTGGA 000640 000641 CAGTGAGGCC AGGATGGAAC CACCAATCCA CACCGAGTAC TTGTGCTCTG GGGGCATGAT GAACTTGATC TTCATGGTGC 000720 000721 TGGATGCCAG CGTGGTGATG CCAGGGCACA TGGTGGTGCT GCTGGACAGC ACTGTGTTGG CGTACAGGTC TTTGCGGATG 000800 000801 TCCACGTCAC ACTTCATGAT GGAGTTGAAG GTGGTCTTGT GGATGCCGCA GGATTCCATG CCCAAGAAGG AAGGCTGGAA 000880 000881 CAGCACCTGC AGACACCAGA ACCACTTGTT GCCGATGGTG ATGACCTGAC CTGGCCATCA GGCAGCTCAT AGCTCTTCTC 000960 000961 CAGGGAGGAG GAGGATGTGG CAGTGGCCAT CTCCTGCTCG AAGTCCAGGG CGATGTAGCA CACCTTCTCG TTGATGTCGC 001040 001041 GCACAATCTC CTGCTTGGCC GTGATGGTGA AGCTTGGTGA GGATCTTCAT GAGGTAGTTG GTCAGGTCCT GGCCAGCCAG 001120 001121 GTCCAGACGC AGGATGGCGT GGTGGGAGGG CATGGCCCTC GTAGATGGGT ACCATGTAGG TGGCCCTGTC TCCAGA |
Predicted Small Protein
| Name | ENST00000604849.1_smProtein_653:928 |
| Length | 92 |
| Molecular weight | 10440.4357 |
| Aromaticity | 0.0659340659341 |
| Instability index | 58.356043956 |
| Isoelectric point | 6.48419189453 |
| Runs | 16 |
| Runs residual | 0.0423534798535 |
| Runs probability | 0.0542803833245 |
| Amino acid sequence | MEPPIHTEYLCSGGMMNLIFMVLDASVVMPGHMVVLLDSTVLAYRSLRMSTSHFMMELKV VLWMPQDSMPKKEGWNSTCRHQNHLLPMVMT |
| Secondary structure | LLLLLEEEEELLLLHHHHHHHHHLLEEELLLLEEEEELLHHHHHHHHLLLHHHHHHHHHH HHEELLLLLLLLLLLLLLLHHHLLLLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |
