Difference between revisions of "LINC01198"
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==Annotated Information== | ==Annotated Information== | ||
| − | === | + | ===Name=== |
| − | LINC01198 | + | LINC01198:long intergenic non-protein coding RNA 1198<ref name="ref1" /> |
| − | + | ||
| − | long intergenic non-protein coding RNA 1198 | + | ===Function=== |
| − | === | + | [[File:TPT1-AS1 func.JPG|right|thumb|400px|'''ROC curve of the LINC01198'''<ref name="ref1" />.]] |
| − | + | LncRNA LINC01198 achieves the highest accuracy for predicting AG patients by time-dependent ROC curve analysis(AUC = 0.942), following the age (AUC = 0.810).<ref name="ref1" /> | |
| − | === | + | |
| − | + | ===Expression=== | |
| − | === | + | The expression levels of LINC01198 is higher expressed in high risk group of anaplastic gliomas patients. <ref name="ref1" /> |
| − | + | ===Diseases=== | |
| − | === | + | Anaplastic gliomas<ref name="ref1" /> |
| − | + | ===Sequence=== | |
| − | === | + | >NR_120426.1 Homo sapiens long intergenic non-protein coding RNA 1198 (LINC01198), long non-coding RNA |
| − | + | <dnaseq>CTCTCGCCTGCCTTCGGCCCTTAGGCTCCGGGAGATTGCAAATAACCTGCTTTCTTTCTGTTCCCAGGTG | |
| − | + | GCGTCGGACCCCTGTCAGAGAGTAAATCTCAAGTAAGGTACCTGCCATCGGCAGATTTGAGCTTTCTTCT | |
| − | + | TGGACACCTAATACCCACAGTCCTCCAGGCTCCGGTAGACTGCAAATGACCTGCTTTCTTTCTGTTCCCG | |
| − | == | + | GGCTGCGTTTGGACCCCTGTCGGATAGTAAATCCCAAGCTCCGGTAGACTGCAAATGACCTGCTTTCTTT |
| − | + | CTGTTCCCGGGCTGCGTTTGGACCCCTGTCGGACAGTAAATCCCAAGAATGGAACAGATAAGAAGATACT | |
| − | == | + | GAAATTGGACGGTGCTGCCGTGCGGCTGCCGCAGGACACCTTTAATATCCCTGTTTCTCAGGCTGTAGAT |
| − | anaplastic gliomas | + | GAAGGGGTTCAGCATGGAGGTGATCACCGTGTACATCACTGAGGCCACTGCAGCCTTTCTCGGGGAAGAT |
| + | GACACATCTGAACTGAGGTACCCTCCAAAGCCTGTTCCGTAAAATCAGCAAACAACTGACAGGATAACTT | ||
| + | CAGGAAGTGGGTATTAATTCTCACGGTATAAGTGAAGACATTAAGCACCAGAGTTTAAGTAGCTTGATCC | ||
| + | ACTGAAAGAGATTCAACTGTGTGGAACCTATGCCGTGGAGAATTGCTTTCTGCCATTGTTATCGTCCAGC | ||
| + | AGTTGCCGAATAGCTCTGACCTGAGCAAAGCAGTGAAACGCGGTGCTGTTGAGTGGGTTGCCACTGCACC | ||
| + | TTTTTCAACTACTCTAGTCTTGTGGAGAAAATACCCCTTCTAAATTTTTTCTTCATTGAATACTCTCCCT | ||
| + | CAGCTCCAGAGTACCATATAGAGTTTTCTTGTATTTTAGAGTTACTGTTTTATCAAAGTTTACCAGTCTT | ||
| + | TTGTATTACATTTCTCCTGTCTAAAAAAAAAAAAAAAAAAAAAAA | ||
| + | </dnaseq> | ||
| + | |||
| + | ==Labs working on this lncRNA== | ||
| + | *Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China. | ||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1"> | ||
| + | Wang W, Yang F, Zhang L, Chen J, Zhao Z, Wang H, Wu F, Liang T, Yan X, Li J, | ||
| + | Lan Q, Wang J, Zhao J. LncRNA profile study reveals four-lncRNA signature | ||
| + | associated with the prognosis of patients with anaplastic gliomas. Oncotarget. | ||
| + | 2016 Nov 22;7(47):77225-77236. | ||
| + | </ref> | ||
| + | </references> | ||
Latest revision as of 12:26, 23 November 2017
Contents
Annotated Information
Name
LINC01198:long intergenic non-protein coding RNA 1198[1]
Function
ROC curve of the LINC01198[1].
LncRNA LINC01198 achieves the highest accuracy for predicting AG patients by time-dependent ROC curve analysis(AUC = 0.942), following the age (AUC = 0.810).[1]
Expression
The expression levels of LINC01198 is higher expressed in high risk group of anaplastic gliomas patients. [1]
Diseases
Anaplastic gliomas[1]
Sequence
>NR_120426.1 Homo sapiens long intergenic non-protein coding RNA 1198 (LINC01198), long non-coding RNA
000001 CTCTCGCCTG CCTTCGGCCC TTAGGCTCCG GGAGATTGCA AATAACCTGC TTTCTTTCTG TTCCCAGGTG GCGTCGGACC 000080
000081 CCTGTCAGAG AGTAAATCTC AAGTAAGGTA CCTGCCATCG GCAGATTTGA GCTTTCTTCT TGGACACCTA ATACCCACAG 000160
000161 TCCTCCAGGC TCCGGTAGAC TGCAAATGAC CTGCTTTCTT TCTGTTCCCG GGCTGCGTTT GGACCCCTGT CGGATAGTAA 000240
000241 ATCCCAAGCT CCGGTAGACT GCAAATGACC TGCTTTCTTT CTGTTCCCGG GCTGCGTTTG GACCCCTGTC GGACAGTAAA 000320
000321 TCCCAAGAAT GGAACAGATA AGAAGATACT GAAATTGGAC GGTGCTGCCG TGCGGCTGCC GCAGGACACC TTTAATATCC 000400
000401 CTGTTTCTCA GGCTGTAGAT GAAGGGGTTC AGCATGGAGG TGATCACCGT GTACATCACT GAGGCCACTG CAGCCTTTCT 000480
000481 CGGGGAAGAT GACACATCTG AACTGAGGTA CCCTCCAAAG CCTGTTCCGT AAAATCAGCA AACAACTGAC AGGATAACTT 000560
000561 CAGGAAGTGG GTATTAATTC TCACGGTATA AGTGAAGACA TTAAGCACCA GAGTTTAAGT AGCTTGATCC ACTGAAAGAG 000640
000641 ATTCAACTGT GTGGAACCTA TGCCGTGGAG AATTGCTTTC TGCCATTGTT ATCGTCCAGC AGTTGCCGAA TAGCTCTGAC 000720
000721 CTGAGCAAAG CAGTGAAACG CGGTGCTGTT GAGTGGGTTG CCACTGCACC TTTTTCAACT ACTCTAGTCT TGTGGAGAAA 000800
000801 ATACCCCTTC TAAATTTTTT CTTCATTGAA TACTCTCCCT CAGCTCCAGA GTACCATATA GAGTTTTCTT GTATTTTAGA 000880
000881 GTTACTGTTT TATCAAAGTT TACCAGTCTT TTGTATTACA TTTCTCCTGT CTAAAAAAAA AAAAAAAAAA AAAAA
000081 CCTGTCAGAG AGTAAATCTC AAGTAAGGTA CCTGCCATCG GCAGATTTGA GCTTTCTTCT TGGACACCTA ATACCCACAG 000160
000161 TCCTCCAGGC TCCGGTAGAC TGCAAATGAC CTGCTTTCTT TCTGTTCCCG GGCTGCGTTT GGACCCCTGT CGGATAGTAA 000240
000241 ATCCCAAGCT CCGGTAGACT GCAAATGACC TGCTTTCTTT CTGTTCCCGG GCTGCGTTTG GACCCCTGTC GGACAGTAAA 000320
000321 TCCCAAGAAT GGAACAGATA AGAAGATACT GAAATTGGAC GGTGCTGCCG TGCGGCTGCC GCAGGACACC TTTAATATCC 000400
000401 CTGTTTCTCA GGCTGTAGAT GAAGGGGTTC AGCATGGAGG TGATCACCGT GTACATCACT GAGGCCACTG CAGCCTTTCT 000480
000481 CGGGGAAGAT GACACATCTG AACTGAGGTA CCCTCCAAAG CCTGTTCCGT AAAATCAGCA AACAACTGAC AGGATAACTT 000560
000561 CAGGAAGTGG GTATTAATTC TCACGGTATA AGTGAAGACA TTAAGCACCA GAGTTTAAGT AGCTTGATCC ACTGAAAGAG 000640
000641 ATTCAACTGT GTGGAACCTA TGCCGTGGAG AATTGCTTTC TGCCATTGTT ATCGTCCAGC AGTTGCCGAA TAGCTCTGAC 000720
000721 CTGAGCAAAG CAGTGAAACG CGGTGCTGTT GAGTGGGTTG CCACTGCACC TTTTTCAACT ACTCTAGTCT TGTGGAGAAA 000800
000801 ATACCCCTTC TAAATTTTTT CTTCATTGAA TACTCTCCCT CAGCTCCAGA GTACCATATA GAGTTTTCTT GTATTTTAGA 000880
000881 GTTACTGTTT TATCAAAGTT TACCAGTCTT TTGTATTACA TTTCTCCTGT CTAAAAAAAA AAAAAAAAAA AAAAA
Labs working on this lncRNA
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
