Difference between revisions of "LINC00969"
Jiabao Cao (talk | contribs) |
|||
| (2 intermediate revisions by one other user not shown) | |||
| Line 2: | Line 2: | ||
==Annotated Information== | ==Annotated Information== | ||
===Name=== | ===Name=== | ||
| − | + | LINC000969:long intergenic non-protein coding RNA 969 | |
| − | ENST00000453324<ref name="ref1" /> | + | ENST00000453324 <ref name="ref1" /> |
===Characteristics=== | ===Characteristics=== | ||
| − | LncRNA ENST00000453324 , also named as LINC000969, is transcribed from the intron area of gene mucin 20 (MUC20) | + | LncRNA ENST00000453324, also named as LINC000969, is transcribed from the intron area of gene mucin 20 (MUC20) <ref name="ref1" />. It is a intron sense overlapping LncRNA <ref name="ref1" />. |
| − | |||
===Expression=== | ===Expression=== | ||
| + | [[File:LincRNA00969-1.JPG|right|thumb|400px|'''RT-qPCR validation reveals significant lncRNA expression differences in LSCC samples compare to the adjacent normal samples'''<ref name="ref1" />.]] | ||
| + | LncRNA ENST00000453324 is significantly upregulated in early stage LSCC (lung squamous cell carcinoma) <ref name="ref1" />. | ||
| − | + | ===Diseases=== | |
| + | Lung squamous cell carcinoma <ref name="ref1" /> | ||
| − | |||
| − | |||
===Sequence=== | ===Sequence=== | ||
>NR_122105.1 Homo sapiens long intergenic non-protein coding RNA 969 (LINC00969), long non-coding RNA | >NR_122105.1 Homo sapiens long intergenic non-protein coding RNA 969 (LINC00969), long non-coding RNA | ||
| Line 35: | Line 35: | ||
==References== | ==References== | ||
<references> | <references> | ||
| − | <ref name="ref1"> | + | <ref name="ref1">Cheng Z, Bai Y, Wang P, Wu Z, Zhou L, Zhong M, Jin Q, Zhao J, Mao H, Mao H. Identification of long noncoding RNAs for the detection of early stage lung squamous cell carcinoma by microarray analysis. Oncotarget. 2017 Feb 21;8(8):13329-13337.</ref> |
| − | Cheng Z, Bai Y, Wang P, Wu Z, Zhou L, Zhong M, Jin Q, Zhao J, Mao H, Mao H. | ||
| − | Identification of long noncoding RNAs for the detection of early stage lung | ||
| − | squamous cell carcinoma by microarray analysis. Oncotarget. 2017 Feb | ||
| − | 21;8(8):13329-13337. | ||
| − | </ref> | ||
</references> | </references> | ||
Latest revision as of 03:34, 29 September 2017
Contents
Annotated Information
Name
LINC000969:long intergenic non-protein coding RNA 969
ENST00000453324 [1]
Characteristics
LncRNA ENST00000453324, also named as LINC000969, is transcribed from the intron area of gene mucin 20 (MUC20) [1]. It is a intron sense overlapping LncRNA [1].
Expression
RT-qPCR validation reveals significant lncRNA expression differences in LSCC samples compare to the adjacent normal samples[1].
LncRNA ENST00000453324 is significantly upregulated in early stage LSCC (lung squamous cell carcinoma) [1].
Diseases
Lung squamous cell carcinoma [1]
Sequence
>NR_122105.1 Homo sapiens long intergenic non-protein coding RNA 969 (LINC00969), long non-coding RNA
000001 ATTTAAATTT TTTTTAATGA TGTCTTTTTT GGCAGTGCAC AGCCAGAGGA CAACACATCA CACACAAGAA ACAGTTGTGC 000080
000081 TCATGTGATG GGGGCCTCAG CACTAGGAAG GAGTGGACTG TTGGCGCACG CAGCAGCTTG AATAAATCTG AAAGTCACTA 000160
000161 CGCTGCGTAA GAGAAGCCAA ATAAAGCGCA TGCTGTGTAC AGAGGGTGTC GAGAATGCCT CCTACGTGAC GGAAAGCAGA 000240
000241 TCCGTGGTTC CCTGCAGACT GGCAGGAGCA GATTCCAAAG GCACAGGAAG AAGCTTGCAG TACAAAGATA AAAATCTAAA 000320
000321 GTGGTTGCTG TGGAGGACAG GGGTCAGTGG TGGAAGTGAG ACCGAAATAG ACTCTGAAGT AATATCTGGA CTTTGAAATT 000400
000401 GCAGCTGCTC CCAACCCCAG AACCTTTGCT GTCTTGGGAC GGATCACCGC TGCAAGAGGG GAAGTTGCTA CTGTGATGAA 000480
000481 TTCTGCCATG TGGCACCAGA CTGCCACCCA GACCACAGTG TCCTCTGCAA CCCTGCTTCT CAGATGACCA AGATGGTGCT 000560
000561 GCAGATGGTG CTGAGGATGG AGAACCCACC AAGCCCCGCT AGGAGCCACC TAGACTGGAT GCAGAGCATG GTTCAGTGAG 000640
000641 TTCTCCAAAC CAGCCTCCCA GGAATGCCAT TCAACATGGC TGTGAGGAGA ATAAAGAAGA GAGCCTGACT CCTCTCCTGA 000720
000721 GGCCCCTTCC CCACCCTGAG CCAGCAGGAT CCACGGAGCA GAGGTCATCT GTCCCCAGCT TGGCCCACTG AGGCCAGCAT 000800
000801 GGCTGGGCCC AGGATGCTTG TCTCTCAGCT CCCATCCTGT GTACTTCCAC ATTGGTTTAA CCAGAGGAAA ACCGAAATCT 000880
000881 ACAATTGTCA TAAACACATT TAAATGTGCG TAGAATCAGC CATACAAATT GTGAAACATA
000081 TCATGTGATG GGGGCCTCAG CACTAGGAAG GAGTGGACTG TTGGCGCACG CAGCAGCTTG AATAAATCTG AAAGTCACTA 000160
000161 CGCTGCGTAA GAGAAGCCAA ATAAAGCGCA TGCTGTGTAC AGAGGGTGTC GAGAATGCCT CCTACGTGAC GGAAAGCAGA 000240
000241 TCCGTGGTTC CCTGCAGACT GGCAGGAGCA GATTCCAAAG GCACAGGAAG AAGCTTGCAG TACAAAGATA AAAATCTAAA 000320
000321 GTGGTTGCTG TGGAGGACAG GGGTCAGTGG TGGAAGTGAG ACCGAAATAG ACTCTGAAGT AATATCTGGA CTTTGAAATT 000400
000401 GCAGCTGCTC CCAACCCCAG AACCTTTGCT GTCTTGGGAC GGATCACCGC TGCAAGAGGG GAAGTTGCTA CTGTGATGAA 000480
000481 TTCTGCCATG TGGCACCAGA CTGCCACCCA GACCACAGTG TCCTCTGCAA CCCTGCTTCT CAGATGACCA AGATGGTGCT 000560
000561 GCAGATGGTG CTGAGGATGG AGAACCCACC AAGCCCCGCT AGGAGCCACC TAGACTGGAT GCAGAGCATG GTTCAGTGAG 000640
000641 TTCTCCAAAC CAGCCTCCCA GGAATGCCAT TCAACATGGC TGTGAGGAGA ATAAAGAAGA GAGCCTGACT CCTCTCCTGA 000720
000721 GGCCCCTTCC CCACCCTGAG CCAGCAGGAT CCACGGAGCA GAGGTCATCT GTCCCCAGCT TGGCCCACTG AGGCCAGCAT 000800
000801 GGCTGGGCCC AGGATGCTTG TCTCTCAGCT CCCATCCTGT GTACTTCCAC ATTGGTTTAA CCAGAGGAAA ACCGAAATCT 000880
000881 ACAATTGTCA TAAACACATT TAAATGTGCG TAGAATCAGC CATACAAATT GTGAAACATA
Labs working on this lncRNA
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Science, Shanghai 200050, China.
