Difference between revisions of "FAM230J"

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(Created page with "''FAM230J'', a lncRNA gene formed from a large segment of the 3' half of the''FAM230C'' sequence duplicated in chr22. ==Annotated Information== ===Name=== ''FAM230J'': family...")
 
 
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==Annotated Information==
 
==Annotated Information==
 
===Name===
 
===Name===
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''FAM230J'': family with sequence similarity 230 member J [https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:52448 (HGNC:52448)]
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Approved symbol：FAM230J
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===Alias===
 
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LINC01660: long intergenic non-protein coding RNA 1660 [https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:52448 (HGNC:52448)]
 
  
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Approved name：family with sequence similarity 230 member J
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HGNC ID:52448
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Previous name：long intergenic non-protein coding RNA 1660
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RefSeq ID：NR_136569
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prev_symbol：LINC01660
 
===Characteristics===
 
===Characteristics===
 
This gene  belongs to the family of long 8 intergenic non-coding RNA genes in human chromosomal region 22q11.21.  This gene carries the TBTA sequence which consists of satellite DNA, Alu elements, and AT-rich sequences.<ref name="ref1" />
 
This gene  belongs to the family of long 8 intergenic non-coding RNA genes in human chromosomal region 22q11.21.  This gene carries the TBTA sequence which consists of satellite DNA, Alu elements, and AT-rich sequences.<ref name="ref1" />
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===Disease===
 
===Disease===
 
Please input information here.
 
Please input information here.
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==Labs working on this lncRNA==    
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==Labs working on this lncRNA==
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*Department of Molecular Genetics and Microbiology, School of Medicine Stony Brook University, Stony Brook, New York, United States of America.<ref name="ref1" />
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Department of Molecular Genetics and Microbiology, School of Medicine Stony Brook University, Stony Brook, New York, United States of America.
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==References==
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==References==
 
 
<references>
 
<references>
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<ref name="ref1"> Delihas N. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence[J]. Plos One. 2018, 13(4):e0195702-e0195702.</ref>(1)
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<ref name="ref1">Delihas N. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence. PLoS One. 2018 Apr 18;13(4):e0195702. doi: 10.1371/journal.pone.0195702. PMID: 29668722; PMCID: PMC5906017.</ref>(1)
 
</references>
 
</references>
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==Sequence==
 
==Sequence==

Latest revision as of 11:09, 19 February 2021

FAM230J, a lncRNA gene formed from a large segment of the 3' half of theFAM230C sequence duplicated in chr22.

Annotated Information

Name

Approved symbol：FAM230J

Approved name：family with sequence similarity 230 member J

HGNC ID:52448

Previous name：long intergenic non-protein coding RNA 1660

RefSeq ID：NR_136569

prev_symbol：LINC01660

Characteristics

This gene belongs to the family of long 8 intergenic non-coding RNA genes in human chromosomal region 22q11.21. This gene carries the TBTA sequence which consists of satellite DNA, Alu elements, and AT-rich sequences.[1]

Function

Functions of RNA transcripts from this family are not known.[1]

Regulation

Please input information here.

Expression

RNA transcripts of these eight FAM230C-related genes are expressed almost exclusively in the testes. [1]

Disease

Please input information here.

Labs working on this lncRNA

  • Department of Molecular Genetics and Microbiology, School of Medicine Stony Brook University, Stony Brook, New York, United States of America.[1]

References

  1. ↑ 1.0 1.1 1.2 1.3 Delihas N. A family of long intergenic non-coding RNA genes in human chromosomal region 22q11.2 carry a DNA translocation breakpoint/AT-rich sequence. PLoS One. 2018 Apr 18;13(4):e0195702. doi: 10.1371/journal.pone.0195702. PMID: 29668722; PMCID: PMC5906017.


Sequence

>gi|729461|ref|NR_136569.1| Homo sapiens family with sequence similarity 230 member J (FAM230J), long non-coding RNA

000001 GATTAGGGAT CTCCTGCCCT TGGTCGTAAG TGCCACTACC TGTGCTGAGT TTTTCAAAGG TCAGAGCAGA TTGAACCATT 000080
000081 GTGGTTTCAT TTTCCCTGAT TTTGATTTTT CTTATGGGGA ACCTGTGTGG CTGCATTCAA GGTGACTCGA AGAAGCCTTC 000160
000161 CAAAAAGCGT GTGAAAAGGA AGCCCTACTC TACTACCAAG GTGACTTCAG GGAGCACATT CAATGAGAAT ACAAGAAGAT 000240
000241 ATGCTGTGCA CACCAACCAG TGTAGGAGAC CTCATGGCTC CCGGGTAAAG AAGAAGAGGT ACCCACAAGA AGATGACTTC 000320
000321 CATCATACAG TCTTCAGCAA CCTTGAAAGA TTGGACAAGC TTCAGCCCAC TCTTGAAGCC TCTGAGGAGT CTCTAGTTCA 000400
000401 CAAGGACAGA GGAGATGGAG AGAGGCCAGT CAACGTGAAG GTGGTGCAGG TGGCCCCTCT GAGGCGTGAA TCTAGAGCCA 000480
000481 TTGACACTGG AGAATGATAC CTACCCTGAA ATAACTCACT TCCTGAGGAA AAAACGCCAT CTCTAGGGTA CAGAAACCTG 000560
000561 ATTCTGGGCT CCTTTTGGGA AGGAGGATTT GGAGTCTGGT GAGAGCAAAT GATTTTGCAA GTATAAAACA ATGTCCAGAG 000640
000641 AGGCTGTAGG GATATCTGTG AGCCCAGAGG AAACACCAGG GGATCCTGTG CGAAGCACCA TGGCTTCAGC TAGGGTGGGA 000720
000721 GGAGTGGGTG GGCCTCTCTC TAATGACTTA TCCTGGTGTT TGTGTTTCTA AAGATTTGAT TGTGGAGAGC ATATCTGATG 000800
000801 ATGGGGATTT GTAGGTAGGT AACTACTTTC CACGTAAGAT CCAATTGGAG AGAGTTCCCA GGGGCCTTCG GGGTATCCAT 000880
000881 GCTGCTTGGG AGGTTAAGGG AGGGGGCATG AAATCAAAAG GAAACAGGAA ATATGTGTCA TATTGGATTT GGTCTTTTCC 000960
000961 GGGTTTATTG GCATAATAGT TAGAACTGTC TCTCTGGGCT ATGAGGGTGC TGTGATATTT AAAGGTGGTC TTTCCCAGAA 001040
001041 CACCTGGCCT TTTCTTTTCT GCCTCTGCCA AACATCACAG CCTTTGGGTT GGATTAGTCA GCACCCCTTG GGATTGTGCA 001120
001121 GAAGAGGTTT GGGGTTGCAT CGAGTGTCAC CTGTGGTGAA CAGAATCTGA GGGACACAAC TCTCTCACAG GCACTTCCTT 001200
001201 CAACCTGGAG ACAGAGTTCT CCTGGTGTGT GCCCAGGGGT GGAGGAGAAA TTGACAGTCT GCCTCTGAAC TTTCAGGACT 001280
001281 TTAAAAAGCA CTCATGTTTC CATCCTCACT GTTGACTCCT GGCTTAAAGG GATCTCCCGG GGTGAGTGAG GAGGCGGGAT 001360
001361 TGGACCCTGG CAGTCTGACG GCAGCACCTG TGTTCCTCTG CACTGGGCCG TGGATGACAT TACACACCTT GCCACTCCCA 001440
001441 CGGTCCTGTG TGTTCCGGAT ATTTTAAAAT AATGGCTATA AGGTTGAGCA CTTCAGGATA CGCTGTTTTG CTGTGTGCAG 001520
001521 ATGGAGGCAG TGGCTGGAGT GAATGAACGG CAACACTTGC TGGCAACCGG CAGAAGCTGA GAGACAGGGA ACAGGCTCTC 001600
001601 CTCCAGAGCC TCCAGGAGCC AGGCCTTTGG ACACCTTGAA TGTGGGCTTC TGGGAGACCA TGCGTTTCTG TTATAAGCAG 001680
001681 CCCAGTCTCT GGCAGTTTTT ACGGCTGCCC CGGAACACTC ATCTATACCT GTCTGACAAG GTCAAGCTCC AAGGAAGGGA 001760
001761 CTCTCTACAT ATCTACATTG TTTGCAGATT TTACAATAAT CATTTATTCT TGCATGGCTG ATCATTGTTA ACCAATACAA 001840
001841 ATAAAATAAT AAAGAAATG
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