Difference between revisions of "ENST00000594299.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CCATGTTAGTCAGGCTGGTCTTGAACTCCTGGTATCAAGTGATCTGCCCGCCTGAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCCCTGTCCTCCCCCTTTTACAGATGAGGCAGCTGAGGCCCAGAGTCACAGGGCTGGTGAGGAACACAGCCTGGATCAGAGCCCAGGAAGCCTGGGTCAAGGCTCACGTCTCTTGAGTGAGGGGCTCTGCCCTCCTCCATCCTGTTCTTTGTAGTGTCATCTTTCATGACCTACATGGAGACATTCAAATCCGGGGATGACACAGAGCTTGGAGGGAGAGACGTGTCAGGAGACAGAAACAGTGTCCCTGGAGATATCAGCAGGCAAGTGTGCTGAGCTCACACTGAGAGCCAGAGGGGATTCTGAAAACTAGACTGATGATTAAAACTGCTTAAAAACTCAGCAGCCTCCCCATGCTCCCGGGATTAATGATGCAGGCTCACATTGACTACACACGTTTATACCAGGCGCCATGTTCTTTGCCGAAACTCCCGCTCAGAGCCTGGATGATCTGCCCCTCACCTCTGCCCTCGTTCCCATCCACTCTCCCCTCCTTGCTCTGTTCCAGCCACACTGGCCTCTTGCTGTTCCTCACACTCTCCACGTCCAGGCACACCCCAGGGCCTTTGCACTGGCTCTCACTGCTGCCTCCAGTGAGCTCCCTCCAGATCTTCTTGGGTGCAGCTCATGAGGACTCGCTCTAATGCCACCCCCTCAAACAGGTCCTCCTGGCCTTCAGTAGCCCAGGCTGTCATTCTGTGTCACTGTACTCTGTTCCACATCCCGTGTCCCCCATGGGAAACAGGTGCCACCGTCTTAGTCACAAGGCACTTGTAACGTGCCTGGCACACAGGGCATGCTCCATCCTGAACATAAGACGTGTGGATCTTGTTTGATTCTCACGTGACCCCAATAAGTAGATACTATAAGGCCCCCACTTTTCAGTGTGGCCCAAGTTGGGCCCTGCTGAACCCTGTTACCCTCCTCAACAATCACCCGTACACACTGCTTCCTCTGCCTGGAACCCACCCCCCAACCCGCACCCCCACTCTAGGCCCACTCCTGCCCACCCATGTTAATTTGCTGGGGCAGCCGCAACAAACTACCACACACTGAGTGGCTTAAACTGCAGAAATGTATCATCTCACAGTTGCGGAGGCCAGAAGTCCAAGTTCCAGGCGTCAACAGGGTGGTTCCCTCCAAGGGCGGTGAGGGAGAACCTGTTCCTGGCCTCCCTCTTAGCAGCCGGTGGGTGTCAGCACGTAGATTCATCACCCCCGTCTCTACCTCCTCTTCGCATGATGTTCTCCCTGCATCTGTGCCCACATTTCCTCTTTCTGCAAGGACGCCAATCTAACGGGATTAGGGGTCTACCCTAATGACCTCATTTTCACTTGATTGCCTCTGTAAAGACTCTGTCTCCAAATGAGGTCACATTTGGAGATGCTGGGGCTTAGGACTTCAATGTAGCTTTTTGTGGGGCCCCAGTTCAACCCATAACACCACTCCTTGGGTATCAACACAGACACGCCTTTCTTGCAGAAGTTGTCTGAACCCCCACACCAGGCTCAGCCCACCCCCAGCACCTGTCCCAGGGCACAGCGACCGCCACTCCCTTGGCAACTTGCTTCCTCTCTGTCACCCCCATGGGGCCCAGAACAGAGACATCCTGAACCTCACCCAGACCACACACTTAGTAGGTGCTCAGAAGATGTACCTGGAGAGACAACAACCCTATCCAACAACAGCTTTCCCAGTGATGAAATCCAGAGATGGCTTGTATATGTGTGTGTTGGTGTAAACATATGTAAACTAAGCATATAAAATATCAGCAGGAGACACAAATGAAA</dnaseq>| | sequence = <dnaseq>CCATGTTAGTCAGGCTGGTCTTGAACTCCTGGTATCAAGTGATCTGCCCGCCTGAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCCCTGTCCTCCCCCTTTTACAGATGAGGCAGCTGAGGCCCAGAGTCACAGGGCTGGTGAGGAACACAGCCTGGATCAGAGCCCAGGAAGCCTGGGTCAAGGCTCACGTCTCTTGAGTGAGGGGCTCTGCCCTCCTCCATCCTGTTCTTTGTAGTGTCATCTTTCATGACCTACATGGAGACATTCAAATCCGGGGATGACACAGAGCTTGGAGGGAGAGACGTGTCAGGAGACAGAAACAGTGTCCCTGGAGATATCAGCAGGCAAGTGTGCTGAGCTCACACTGAGAGCCAGAGGGGATTCTGAAAACTAGACTGATGATTAAAACTGCTTAAAAACTCAGCAGCCTCCCCATGCTCCCGGGATTAATGATGCAGGCTCACATTGACTACACACGTTTATACCAGGCGCCATGTTCTTTGCCGAAACTCCCGCTCAGAGCCTGGATGATCTGCCCCTCACCTCTGCCCTCGTTCCCATCCACTCTCCCCTCCTTGCTCTGTTCCAGCCACACTGGCCTCTTGCTGTTCCTCACACTCTCCACGTCCAGGCACACCCCAGGGCCTTTGCACTGGCTCTCACTGCTGCCTCCAGTGAGCTCCCTCCAGATCTTCTTGGGTGCAGCTCATGAGGACTCGCTCTAATGCCACCCCCTCAAACAGGTCCTCCTGGCCTTCAGTAGCCCAGGCTGTCATTCTGTGTCACTGTACTCTGTTCCACATCCCGTGTCCCCCATGGGAAACAGGTGCCACCGTCTTAGTCACAAGGCACTTGTAACGTGCCTGGCACACAGGGCATGCTCCATCCTGAACATAAGACGTGTGGATCTTGTTTGATTCTCACGTGACCCCAATAAGTAGATACTATAAGGCCCCCACTTTTCAGTGTGGCCCAAGTTGGGCCCTGCTGAACCCTGTTACCCTCCTCAACAATCACCCGTACACACTGCTTCCTCTGCCTGGAACCCACCCCCCAACCCGCACCCCCACTCTAGGCCCACTCCTGCCCACCCATGTTAATTTGCTGGGGCAGCCGCAACAAACTACCACACACTGAGTGGCTTAAACTGCAGAAATGTATCATCTCACAGTTGCGGAGGCCAGAAGTCCAAGTTCCAGGCGTCAACAGGGTGGTTCCCTCCAAGGGCGGTGAGGGAGAACCTGTTCCTGGCCTCCCTCTTAGCAGCCGGTGGGTGTCAGCACGTAGATTCATCACCCCCGTCTCTACCTCCTCTTCGCATGATGTTCTCCCTGCATCTGTGCCCACATTTCCTCTTTCTGCAAGGACGCCAATCTAACGGGATTAGGGGTCTACCCTAATGACCTCATTTTCACTTGATTGCCTCTGTAAAGACTCTGTCTCCAAATGAGGTCACATTTGGAGATGCTGGGGCTTAGGACTTCAATGTAGCTTTTTGTGGGGCCCCAGTTCAACCCATAACACCACTCCTTGGGTATCAACACAGACACGCCTTTCTTGCAGAAGTTGTCTGAACCCCCACACCAGGCTCAGCCCACCCCCAGCACCTGTCCCAGGGCACAGCGACCGCCACTCCCTTGGCAACTTGCTTCCTCTCTGTCACCCCCATGGGGCCCAGAACAGAGACATCCTGAACCTCACCCAGACCACACACTTAGTAGGTGCTCAGAAGATGTACCTGGAGAGACAACAACCCTATCCAACAACAGCTTTCCCAGTGATGAAATCCAGAGATGGCTTGTATATGTGTGTGTTGGTGTAAACATATGTAAACTAAGCATATAAAATATCAGCAGGAGACACAAATGAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(S)]] | + | [[Category:Intronic(S)]][[Category:ENSG00000269653.1]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 18:37, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000594299.1 |
Source |
Gencode19 |
Same with |
, |
Classification |
intronic(S) |
Length |
1890 nt |
Genomic location |
chr19+:38675016..38676905 |
Exon number |
1 |
Exons |
38675016..38676905 |
Genome context |
|
Sequence |
000001 CCATGTTAGT CAGGCTGGTC TTGAACTCCT GGTATCAAGT GATCTGCCCG CCTGAGCCTC CCAAAGTGCT GGGATTACAG 000080
000081 GCGTGAGCCA CTGCGCCCGG CCCCTGTCCT CCCCCTTTTA CAGATGAGGC AGCTGAGGCC CAGAGTCACA GGGCTGGTGA 000160 000161 GGAACACAGC CTGGATCAGA GCCCAGGAAG CCTGGGTCAA GGCTCACGTC TCTTGAGTGA GGGGCTCTGC CCTCCTCCAT 000240 000241 CCTGTTCTTT GTAGTGTCAT CTTTCATGAC CTACATGGAG ACATTCAAAT CCGGGGATGA CACAGAGCTT GGAGGGAGAG 000320 000321 ACGTGTCAGG AGACAGAAAC AGTGTCCCTG GAGATATCAG CAGGCAAGTG TGCTGAGCTC ACACTGAGAG CCAGAGGGGA 000400 000401 TTCTGAAAAC TAGACTGATG ATTAAAACTG CTTAAAAACT CAGCAGCCTC CCCATGCTCC CGGGATTAAT GATGCAGGCT 000480 000481 CACATTGACT ACACACGTTT ATACCAGGCG CCATGTTCTT TGCCGAAACT CCCGCTCAGA GCCTGGATGA TCTGCCCCTC 000560 000561 ACCTCTGCCC TCGTTCCCAT CCACTCTCCC CTCCTTGCTC TGTTCCAGCC ACACTGGCCT CTTGCTGTTC CTCACACTCT 000640 000641 CCACGTCCAG GCACACCCCA GGGCCTTTGC ACTGGCTCTC ACTGCTGCCT CCAGTGAGCT CCCTCCAGAT CTTCTTGGGT 000720 000721 GCAGCTCATG AGGACTCGCT CTAATGCCAC CCCCTCAAAC AGGTCCTCCT GGCCTTCAGT AGCCCAGGCT GTCATTCTGT 000800 000801 GTCACTGTAC TCTGTTCCAC ATCCCGTGTC CCCCATGGGA AACAGGTGCC ACCGTCTTAG TCACAAGGCA CTTGTAACGT 000880 000881 GCCTGGCACA CAGGGCATGC TCCATCCTGA ACATAAGACG TGTGGATCTT GTTTGATTCT CACGTGACCC CAATAAGTAG 000960 000961 ATACTATAAG GCCCCCACTT TTCAGTGTGG CCCAAGTTGG GCCCTGCTGA ACCCTGTTAC CCTCCTCAAC AATCACCCGT 001040 001041 ACACACTGCT TCCTCTGCCT GGAACCCACC CCCCAACCCG CACCCCCACT CTAGGCCCAC TCCTGCCCAC CCATGTTAAT 001120 001121 TTGCTGGGGC AGCCGCAACA AACTACCACA CACTGAGTGG CTTAAACTGC AGAAATGTAT CATCTCACAG TTGCGGAGGC 001200 001201 CAGAAGTCCA AGTTCCAGGC GTCAACAGGG TGGTTCCCTC CAAGGGCGGT GAGGGAGAAC CTGTTCCTGG CCTCCCTCTT 001280 001281 AGCAGCCGGT GGGTGTCAGC ACGTAGATTC ATCACCCCCG TCTCTACCTC CTCTTCGCAT GATGTTCTCC CTGCATCTGT 001360 001361 GCCCACATTT CCTCTTTCTG CAAGGACGCC AATCTAACGG GATTAGGGGT CTACCCTAAT GACCTCATTT TCACTTGATT 001440 001441 GCCTCTGTAA AGACTCTGTC TCCAAATGAG GTCACATTTG GAGATGCTGG GGCTTAGGAC TTCAATGTAG CTTTTTGTGG 001520 001521 GGCCCCAGTT CAACCCATAA CACCACTCCT TGGGTATCAA CACAGACACG CCTTTCTTGC AGAAGTTGTC TGAACCCCCA 001600 001601 CACCAGGCTC AGCCCACCCC CAGCACCTGT CCCAGGGCAC AGCGACCGCC ACTCCCTTGG CAACTTGCTT CCTCTCTGTC 001680 001681 ACCCCCATGG GGCCCAGAAC AGAGACATCC TGAACCTCAC CCAGACCACA CACTTAGTAG GTGCTCAGAA GATGTACCTG 001760 001761 GAGAGACAAC AACCCTATCC AACAACAGCT TTCCCAGTGA TGAAATCCAG AGATGGCTTG TATATGTGTG TGTTGGTGTA 001840 001841 AACATATGTA AACTAAGCAT ATAAAATATC AGCAGGAGAC ACAAATGAAA |
Predicted Small Protein
Name | ENST00000594299.1_smProtein_1112:1396 |
Length | 95 |
Molecular weight | 10335.9514 |
Aromaticity | 0.0531914893617 |
Instability index | 78.4308510638 |
Isoelectric point | 10.8473510742 |
Runs | 11 |
Runs residual | 0.0117946345976 |
Runs probability | 0.0401149812915 |
Amino acid sequence | MLICWGSRNKLPHTEWLKLQKCIISQLRRPEVQVPGVNRVVPSKGGEGEPVPGLPLSSRW VSARRFITPVSTSSSHDVLPASVPTFPLSARTPI |
Secondary structure | LEEEELLLLLLLLHHHHHHHHHHHHHLLLLLEELLLLEEEELLLLLLLLLLLLLLLLLEE EEEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |