Difference between revisions of "ENST00000416894.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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==Annotated Information== | ==Annotated Information== | ||
| + | ===Name=== | ||
| + | LINC00568 | ||
| + | |||
| + | ===Characteristics=== | ||
| + | Spliced two exon transcript of ~550 nt in length ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. ~2kb downstream from 3' of Extracellular Matrix Protein 1 (ECM1), however a H3K4me3 peak at the TSS provides good evidence it is an independent transcript ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. In-vitro translation showed no sign of a protein product ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. | ||
| + | |||
| + | ===Function=== | ||
| + | LncRNA stimulates ECM1 gene expression (in HEK293 cells) ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. | ||
| + | |||
| + | ===Expression=== | ||
| + | ECM1 and LINC00568 are both upregulated during differentiation of primary human keratinocytes with TPA ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. LINC00568 identified as enriched in K562 and HepG2 nuclear fractions ([http://www.ncbi.nlm.nih.gov/pubmed/22955988 Derrien (2012))]. | ||
| + | |||
| + | ===Conservation=== | ||
| + | Please input conservation information here. | ||
| + | |||
| + | ===Misc=== | ||
| + | Please input misc information here. | ||
| + | |||
===Transcriptomic Nomeclature=== | ===Transcriptomic Nomeclature=== | ||
Please input transcriptomic nomeclature information here. | Please input transcriptomic nomeclature information here. | ||
| − | |||
| − | |||
| − | |||
===Regulation=== | ===Regulation=== | ||
Please input regulation information here. | Please input regulation information here. | ||
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| − | |||
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===Allelic Information and Variation=== | ===Allelic Information and Variation=== | ||
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==References== | ==References== | ||
| − | + | [http://www.lncrnadb.org/LINC00568/ Annotation originally sourced from lncRNAdb.] | |
{{basic| | {{basic| | ||
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sequence = <dnaseq>GCGCATCTCCTACGGCCTCCAGGACAGAGGAACCGGGGGAGGCAGGGGGAAAAGGCCGGCCCAGCAATTCCCCTACCCCCCGGTCCCACGTGTACCCTCCTGGCCTGGGTCGCCCCAGCCCACGGGGAGCGGGCGGAGTCCTGGCCCACGAAGCCTTGTCACCTGGCGGGCGAATCCGCAAGCGGAGACTTGTCTTTAAAGGGCTTTGGGCCGGGCGCGGTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCGAGGCGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGAAGCTCATACTGACTAAGGCAGCAGAACATACAGGAGGAAGAGGAGCAGGTTTCACAGAGGGAAGACATGAGTTCAATTTTGGACTTCTCAGTAGTCGGTGTCCTCAGTGGTAGCAACTTCAAACGGAAGGTGTCAAAAGTCAAATTCTGGAGAGTTGAGTATGAATGGGAGATGAAGAAAAGGAGGCAGCACTTGTAGCCTGCTCTTAATGTATTTCTGCACTCTACACTAGCAGCCTATTACACAGGACACTTGGATGTCT</dnaseq>| | sequence = <dnaseq>GCGCATCTCCTACGGCCTCCAGGACAGAGGAACCGGGGGAGGCAGGGGGAAAAGGCCGGCCCAGCAATTCCCCTACCCCCCGGTCCCACGTGTACCCTCCTGGCCTGGGTCGCCCCAGCCCACGGGGAGCGGGCGGAGTCCTGGCCCACGAAGCCTTGTCACCTGGCGGGCGAATCCGCAAGCGGAGACTTGTCTTTAAAGGGCTTTGGGCCGGGCGCGGTGGCTCATGCCTGGAATCCCAGCACTTTGGGAGGCCGAGGCGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGAAGCTCATACTGACTAAGGCAGCAGAACATACAGGAGGAAGAGGAGCAGGTTTCACAGAGGGAAGACATGAGTTCAATTTTGGACTTCTCAGTAGTCGGTGTCCTCAGTGGTAGCAACTTCAAACGGAAGGTGTCAAAAGTCAAATTCTGGAGAGTTGAGTATGAATGGGAGATGAAGAAAAGGAGGCAGCACTTGTAGCCTGCTCTTAATGTATTTCTGCACTCTACACTAGCAGCCTATTACACAGGACACTTGGATGTCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-ECM1-1]][[Category:NONHSAG002854]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 03:17, 26 August 2015
Please input one-sentence summary here.
Contents
Annotated Information
Name
LINC00568
Characteristics
Spliced two exon transcript of ~550 nt in length (Arom (2010)). ~2kb downstream from 3' of Extracellular Matrix Protein 1 (ECM1), however a H3K4me3 peak at the TSS provides good evidence it is an independent transcript (Arom (2010)). In-vitro translation showed no sign of a protein product (Arom (2010)).
Function
LncRNA stimulates ECM1 gene expression (in HEK293 cells) (Arom (2010)).
Expression
ECM1 and LINC00568 are both upregulated during differentiation of primary human keratinocytes with TPA (Arom (2010)). LINC00568 identified as enriched in K562 and HepG2 nuclear fractions (Derrien (2012)).
Conservation
Please input conservation information here.
Misc
Please input misc information here.
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Annotation originally sourced from lncRNAdb.
Basic Information
| Transcript ID |
ENST00000416894.1 |
| Source |
Gencode19 |
| Same with |
lnc-ECM1-1:1,NONHSAT006301 |
| Classification |
intergenic |
| Length |
566 nt |
| Genomic location |
chr1+:150488233..150490508 |
| Exon number |
2 |
| Exons |
150488233..150488538,150490249..150490508 |
| Genome context |
|
| Sequence |
000001 GCGCATCTCC TACGGCCTCC AGGACAGAGG AACCGGGGGA GGCAGGGGGA AAAGGCCGGC CCAGCAATTC CCCTACCCCC 000080
000081 CGGTCCCACG TGTACCCTCC TGGCCTGGGT CGCCCCAGCC CACGGGGAGC GGGCGGAGTC CTGGCCCACG AAGCCTTGTC 000160 000161 ACCTGGCGGG CGAATCCGCA AGCGGAGACT TGTCTTTAAA GGGCTTTGGG CCGGGCGCGG TGGCTCATGC CTGGAATCCC 000240 000241 AGCACTTTGG GAGGCCGAGG CGGTGGATCA CGAGGTCAGG AGTTCAAGAC CAGCCTGGCC AAGAAGCTCA TACTGACTAA 000320 000321 GGCAGCAGAA CATACAGGAG GAAGAGGAGC AGGTTTCACA GAGGGAAGAC ATGAGTTCAA TTTTGGACTT CTCAGTAGTC 000400 000401 GGTGTCCTCA GTGGTAGCAA CTTCAAACGG AAGGTGTCAA AAGTCAAATT CTGGAGAGTT GAGTATGAAT GGGAGATGAA 000480 000481 GAAAAGGAGG CAGCACTTGT AGCCTGCTCT TAATGTATTT CTGCACTCTA CACTAGCAGC CTATTACACA GGACACTTGG 000560 000561 ATGTCT |
