Difference between revisions of "ENST00000582838.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>ATCATTTCCCTGAGCTCACTTTATCCTTTTCCTTCTTAAAGGCGACCATTTCATTAAGTTTTTAAGTGCCTGGTAATTGCTTGGTTATGACCGGTGTCTGCTCCATGGCAGCCTCTTCCTGAAGAAATGCTGAGGCAGTGTCACGCTGGTGTCTGTCCTCCTTACAGAATGCCTGAACAGTTCCATTGACTCAAAGTGAAGATCAAAAGAACCAAATGACAGCAATAGCCAAGTGTAATCATCAGTAACCCTGTGTTCTATCCACAGGTAAAAAACAATCATCCTCTTCATTATGGGTTTCAATTTTAAATGTAATACATTTTTAGAAATGCCTATTTCCTTTTATAATCTCTTTATATAATCTAGGTTATTCTGGCTCTTAGGTCTTCATTTAGCTACTGAAAAGATTTGATCTCAAATCAATGATCTAACCACCCATGACCATCTCCCACCTCTCTCCCCGTACACCCCCCAGCATGAATTCTGGGAACTCAGGTAAAATGCTTTCTGGAAACCTGCCTGTATTAGTCTGTTGTCAAGCTGCTAATAAACACATACCCGAAACTGGGTAGTTTATAAAGGAAA</dnaseq>| | sequence = <dnaseq>ATCATTTCCCTGAGCTCACTTTATCCTTTTCCTTCTTAAAGGCGACCATTTCATTAAGTTTTTAAGTGCCTGGTAATTGCTTGGTTATGACCGGTGTCTGCTCCATGGCAGCCTCTTCCTGAAGAAATGCTGAGGCAGTGTCACGCTGGTGTCTGTCCTCCTTACAGAATGCCTGAACAGTTCCATTGACTCAAAGTGAAGATCAAAAGAACCAAATGACAGCAATAGCCAAGTGTAATCATCAGTAACCCTGTGTTCTATCCACAGGTAAAAAACAATCATCCTCTTCATTATGGGTTTCAATTTTAAATGTAATACATTTTTAGAAATGCCTATTTCCTTTTATAATCTCTTTATATAATCTAGGTTATTCTGGCTCTTAGGTCTTCATTTAGCTACTGAAAAGATTTGATCTCAAATCAATGATCTAACCACCCATGACCATCTCCCACCTCTCTCCCCGTACACCCCCCAGCATGAATTCTGGGAACTCAGGTAAAATGCTTTCTGGAAACCTGCCTGTATTAGTCTGTTGTCAAGCTGCTAATAAACACATACCCGAAACTGGGTAGTTTATAAAGGAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-GGCT-1]][[Category:NONHSAG047260]][[Category:Transcripts]] |
Latest revision as of 18:17, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000582838.1 |
| Source |
Gencode19 |
| Same with |
lnc-GGCT-1:25,NONHSAT119893 |
| Classification |
intergenic |
| Length |
585 nt |
| Genomic location |
chr7-:30589934..30591836 |
| Exon number |
2 |
| Exons |
30589934..30590397,30591716..30591836 |
| Genome context |
|
| Sequence |
000001 ATCATTTCCC TGAGCTCACT TTATCCTTTT CCTTCTTAAA GGCGACCATT TCATTAAGTT TTTAAGTGCC TGGTAATTGC 000080
000081 TTGGTTATGA CCGGTGTCTG CTCCATGGCA GCCTCTTCCT GAAGAAATGC TGAGGCAGTG TCACGCTGGT GTCTGTCCTC 000160 000161 CTTACAGAAT GCCTGAACAG TTCCATTGAC TCAAAGTGAA GATCAAAAGA ACCAAATGAC AGCAATAGCC AAGTGTAATC 000240 000241 ATCAGTAACC CTGTGTTCTA TCCACAGGTA AAAAACAATC ATCCTCTTCA TTATGGGTTT CAATTTTAAA TGTAATACAT 000320 000321 TTTTAGAAAT GCCTATTTCC TTTTATAATC TCTTTATATA ATCTAGGTTA TTCTGGCTCT TAGGTCTTCA TTTAGCTACT 000400 000401 GAAAAGATTT GATCTCAAAT CAATGATCTA ACCACCCATG ACCATCTCCC ACCTCTCTCC CCGTACACCC CCCAGCATGA 000480 000481 ATTCTGGGAA CTCAGGTAAA ATGCTTTCTG GAAACCTGCC TGTATTAGTC TGTTGTCAAG CTGCTAATAA ACACATACCC 000560 000561 GAAACTGGGT AGTTTATAAA GGAAA |
Predicted Small Protein
| Name | ENST00000582838.1_smProtein_437:571 |
| Length | 45 |
| Molecular weight | 4577.2717 |
| Aromaticity | 0.0 |
| Instability index | 51.5409090909 |
| Isoelectric point | 8.88751220703 |
| Runs | 8 |
| Runs residual | 0.0187165775401 |
| Runs probability | 0.0434883412826 |
| Amino acid sequence | MTISHLSPRTPPSMNSGNSGKMLSGNLPVLVCCQAANKHIPETG |
| Secondary structure | LEEEELLLLLLLLLLLLLLLEEELLLLLEEEEEHHHLLLLLLLL |
| PRMN | - |
| PiMo | - |
