Difference between revisions of "ENST00000567448.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ATTTGCTTCTCCTTCTGCCATGATCCTAGGATTTAGAACCTGGACCTGGACGCCTCACTGCTTCCTGCTTCCTTAGTGCCTTGTGGCCTGGAGTCAGAATAATCTAGCTCAAACTTGGGAGTCAAATGCTCCAGGGTCTTGAACTGGTCAGAGCTCTCAATGCCGCAAAGACACTTTCAGAAGAGGAACGAAGGCCTGGAAGGAAAAGCATCAGGGGAACGACGCTTACGTCTCTCCTCCTCCCTCCGGTCTCCCACCAGTGCTCCCATTGGCTGAAGCCAACCAGAAGCCACAGGCAGACTTTTCAAGTTGTGCTCCCAAGACTGGGGAAGACTTTGATGTAGATCCAGCATCACTTACCTGTGCCTCCAGGATGAGGCATCTGCAGAACCAACGTCAATTGACCTGGATCCAAGAACAGTTATGGTGATTGGAAATTGATCAAAATACGGAGATCAACGATGCTCAATAGGAGGAAGAGAGAGATGGCAAGGTCTGGGAAAGCTCGTTCCTTTAATTCTCAGGGTCTTAGGATGGAGGAGAAGGAGCCTGGAGACAGGACTCTGGAAGTCTAGAACTCTTCCCAGGGGTATCTGGGCAATCCCCAACAGAGCACTTGGTCTCTAATTTCTCAGAGTGGCCACCTGCTTTGGACTCACTCAGGAAACTTATTAAGGATACAGATGCTTTGGTGCCCTTGTCCCCAACCAACCAGGGTCCCAGGGTCAGGACTCAGGGGTTTTGTGAGTCACAAGGTCTCCAGATGATTCTGAGACTTTCAACCAGAGACTTTAAAGTAGGGAGGAGAAACCAAGATGCCTGTCCTTCGGCTTTATGTGCTAACACTTGCCAAATGCCTTCAAATCTGAGGAAATGGGAGGGAAGAGTTCAGTTCAAGAAGGGAAAACTTCGGCGATGACCTGGGGTTTT</dnaseq>| | sequence = <dnaseq>ATTTGCTTCTCCTTCTGCCATGATCCTAGGATTTAGAACCTGGACCTGGACGCCTCACTGCTTCCTGCTTCCTTAGTGCCTTGTGGCCTGGAGTCAGAATAATCTAGCTCAAACTTGGGAGTCAAATGCTCCAGGGTCTTGAACTGGTCAGAGCTCTCAATGCCGCAAAGACACTTTCAGAAGAGGAACGAAGGCCTGGAAGGAAAAGCATCAGGGGAACGACGCTTACGTCTCTCCTCCTCCCTCCGGTCTCCCACCAGTGCTCCCATTGGCTGAAGCCAACCAGAAGCCACAGGCAGACTTTTCAAGTTGTGCTCCCAAGACTGGGGAAGACTTTGATGTAGATCCAGCATCACTTACCTGTGCCTCCAGGATGAGGCATCTGCAGAACCAACGTCAATTGACCTGGATCCAAGAACAGTTATGGTGATTGGAAATTGATCAAAATACGGAGATCAACGATGCTCAATAGGAGGAAGAGAGAGATGGCAAGGTCTGGGAAAGCTCGTTCCTTTAATTCTCAGGGTCTTAGGATGGAGGAGAAGGAGCCTGGAGACAGGACTCTGGAAGTCTAGAACTCTTCCCAGGGGTATCTGGGCAATCCCCAACAGAGCACTTGGTCTCTAATTTCTCAGAGTGGCCACCTGCTTTGGACTCACTCAGGAAACTTATTAAGGATACAGATGCTTTGGTGCCCTTGTCCCCAACCAACCAGGGTCCCAGGGTCAGGACTCAGGGGTTTTGTGAGTCACAAGGTCTCCAGATGATTCTGAGACTTTCAACCAGAGACTTTAAAGTAGGGAGGAGAAACCAAGATGCCTGTCCTTCGGCTTTATGTGCTAACACTTGCCAAATGCCTTCAAATCTGAGGAAATGGGAGGGAAGAGTTCAGTTCAAGAAGGGAAAACTTCGGCGATGACCTGGGGTTTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-NDRG4-1]][[Category:NONHSAG019602]][[Category:ENSG00000260186.1]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 17:59, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000567448.1 |
Source |
Gencode19 |
Same with |
lnc-NDRG4-1:3,NONHSAT142840 |
Classification |
intergenic |
Length |
930 nt |
Genomic location |
chr16+:58455265..58484599 |
Exon number |
4 |
Exons |
58455265..58455289,58467714..58467852,58469596..58469727,58483966..58484599 |
Genome context |
|
Sequence |
000001 ATTTGCTTCT CCTTCTGCCA TGATCCTAGG ATTTAGAACC TGGACCTGGA CGCCTCACTG CTTCCTGCTT CCTTAGTGCC 000080
000081 TTGTGGCCTG GAGTCAGAAT AATCTAGCTC AAACTTGGGA GTCAAATGCT CCAGGGTCTT GAACTGGTCA GAGCTCTCAA 000160 000161 TGCCGCAAAG ACACTTTCAG AAGAGGAACG AAGGCCTGGA AGGAAAAGCA TCAGGGGAAC GACGCTTACG TCTCTCCTCC 000240 000241 TCCCTCCGGT CTCCCACCAG TGCTCCCATT GGCTGAAGCC AACCAGAAGC CACAGGCAGA CTTTTCAAGT TGTGCTCCCA 000320 000321 AGACTGGGGA AGACTTTGAT GTAGATCCAG CATCACTTAC CTGTGCCTCC AGGATGAGGC ATCTGCAGAA CCAACGTCAA 000400 000401 TTGACCTGGA TCCAAGAACA GTTATGGTGA TTGGAAATTG ATCAAAATAC GGAGATCAAC GATGCTCAAT AGGAGGAAGA 000480 000481 GAGAGATGGC AAGGTCTGGG AAAGCTCGTT CCTTTAATTC TCAGGGTCTT AGGATGGAGG AGAAGGAGCC TGGAGACAGG 000560 000561 ACTCTGGAAG TCTAGAACTC TTCCCAGGGG TATCTGGGCA ATCCCCAACA GAGCACTTGG TCTCTAATTT CTCAGAGTGG 000640 000641 CCACCTGCTT TGGACTCACT CAGGAAACTT ATTAAGGATA CAGATGCTTT GGTGCCCTTG TCCCCAACCA ACCAGGGTCC 000720 000721 CAGGGTCAGG ACTCAGGGGT TTTGTGAGTC ACAAGGTCTC CAGATGATTC TGAGACTTTC AACCAGAGAC TTTAAAGTAG 000800 000801 GGAGGAGAAA CCAAGATGCC TGTCCTTCGG CTTTATGTGC TAACACTTGC CAAATGCCTT CAAATCTGAG GAAATGGGAG 000880 000881 GGAAGAGTTC AGTTCAAGAA GGGAAAACTT CGGCGATGAC CTGGGGTTTT |
Predicted Small Protein
Name | ENST00000567448.1_smProtein_125:343 |
Length | 73 |
Molecular weight | 8171.5384 |
Aromaticity | 0.0277777777778 |
Instability index | 50.35 |
Isoelectric point | 11.5545043945 |
Runs | 12 |
Runs residual | 0.0257502027575 |
Runs probability | 0.0443531767061 |
Amino acid sequence | MLQGLELVRALNAAKTLSEEERRPGRKSIRGTTLTSLLLPPVSHQCSHWLKPTRSHRQTF QVVLPRLGKTLM |
Secondary structure | LLLHHHHHHHHHHHHLLLHHHLLLLLLLEELLLHHHHLLLLLLLLLLLLLLLLLLLLEEE EEEEHHHLLLLL |
PRMN | - |
PiMo | - |