Difference between revisions of "ENST00000420044.1"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (3 intermediate revisions by 2 users not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>ATTCACTTACCTGCTCTGATAAATTCTGCTGCCATCCTGAGAGCTGCACCACGGAGAGGCCCACATGGCAAGGAACTGAGGGCTACCTTTACTGTAGCCTGTGAGAGACCATGGGCCAAGGGATCCAGGACATCTTCTACAGTAGTGGTAATCCTCCATATTTCAGCTGACACCTCTATGTGAGCTGTGGTCATCTTAGTGTCGAGAGAGTCCCCTCTGCCCACATGAAAACCAGTCAGAGACGAGCTGTTTTGAATCAAGTCTCCTGCTCTTGTAGACTTTTAGTTTGACCTTGGAATGTTCAAGCAGACCTCTGCATTTAATCCAAGATTGAGGCAAGTTTTCTCTCTGCCTAGGTTTATCTTGTCTGTCTGTGAACAAAAGAGAGGATAGCAAAGTACCTTGTTTGGATTTGTCTATAAATGTGACCTTCCTAAACTGGCTAA</dnaseq>| | sequence = <dnaseq>ATTCACTTACCTGCTCTGATAAATTCTGCTGCCATCCTGAGAGCTGCACCACGGAGAGGCCCACATGGCAAGGAACTGAGGGCTACCTTTACTGTAGCCTGTGAGAGACCATGGGCCAAGGGATCCAGGACATCTTCTACAGTAGTGGTAATCCTCCATATTTCAGCTGACACCTCTATGTGAGCTGTGGTCATCTTAGTGTCGAGAGAGTCCCCTCTGCCCACATGAAAACCAGTCAGAGACGAGCTGTTTTGAATCAAGTCTCCTGCTCTTGTAGACTTTTAGTTTGACCTTGGAATGTTCAAGCAGACCTCTGCATTTAATCCAAGATTGAGGCAAGTTTTCTCTCTGCCTAGGTTTATCTTGTCTGTCTGTGAACAAAAGAGAGGATAGCAAAGTACCTTGTTTGGATTTGTCTATAAATGTGACCTTCCTAAACTGGCTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]] | + | [[Category:Intronic(AS)]][[Category:lnc-TASP1-1]][[Category:NONHSAG031301]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 15:02, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
ENST00000420044.1 |
| Source |
Gencode19 |
| Same with |
lnc-TASP1-1:1,NONHSAT078686 |
| Classification |
intronic(AS) |
| Length |
446 nt |
| Genomic location |
chr20-:13224711..13226016 |
| Exon number |
2 |
| Exons |
13224711..13225028,13225889..13226016 |
| Genome context |
|
| Sequence |
000001 ATTCACTTAC CTGCTCTGAT AAATTCTGCT GCCATCCTGA GAGCTGCACC ACGGAGAGGC CCACATGGCA AGGAACTGAG 000080
000081 GGCTACCTTT ACTGTAGCCT GTGAGAGACC ATGGGCCAAG GGATCCAGGA CATCTTCTAC AGTAGTGGTA ATCCTCCATA 000160 000161 TTTCAGCTGA CACCTCTATG TGAGCTGTGG TCATCTTAGT GTCGAGAGAG TCCCCTCTGC CCACATGAAA ACCAGTCAGA 000240 000241 GACGAGCTGT TTTGAATCAA GTCTCCTGCT CTTGTAGACT TTTAGTTTGA CCTTGGAATG TTCAAGCAGA CCTCTGCATT 000320 000321 TAATCCAAGA TTGAGGCAAG TTTTCTCTCT GCCTAGGTTT ATCTTGTCTG TCTGTGAACA AAAGAGAGGA TAGCAAAGTA 000400 000401 CCTTGTTTGG ATTTGTCTAT AAATGTGACC TTCCTAAACT GGCTAA |
Predicted Small Protein
| Name | ENST00000420044.1_smProtein_224:289 |
| Length | 22 |
| Molecular weight | 2392.867 |
| Aromaticity | 0.0 |
| Instability index | 69.8380952381 |
| Isoelectric point | 10.7864379883 |
| Runs | 5 |
| Runs residual | 0.00816326530612 |
| Runs probability | 0.0396043101926 |
| Amino acid sequence | MKTSQRRAVLNQVSCSCRLLV |
| Secondary structure | LLLHHHHHHHHLLLLEEEEEL |
| PRMN | - |
| PiMo | - |
