Difference between revisions of "ENST00000555227.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>CTGATAGATACTAAGATAAGAAATAACTGCAACCATAAATGTATACAGGTTATGTGTCCATGAGCCATCTCTTCAGTTTGCCCATAGATTTTTGTCTGTGGAATATTTTCTTGTTTCATCACACTGAATCGTTGGCCAAGAAATGCTTGAAAATCAAAACATTAATATCATCTTTCTTCTTTTTTTTAAAGGTGACTTAAGAGATTAAAATTAATTTGGTTGCTGTTGGTTCTGAACAAATAATGAGTTCTTTTATTTGAGGTATGCCATTTTGAAGACTGAGACGTTGGAGTTTTATCCTAGAGGATAAAGGAAATCTTTGGGAAAGTCAGTATTTTATATAGCAAGTAAGTAAATGTTTTTACCCAACATCTGCAATTGAATAGTTACCAACATTTAAGTAGAAAAATACCATTAAAGTTTGTTAATGAAACAAACTGTAGACTACTTATCACTGAAAGGATGAGAAAACCATCAAATTTCTTTGCCTGACATTGAAAACACTTCTATTACTATCAAGACAGTCGATGCATGTAATTTATATTGGAGCAGGAAGACATTTAGTACTTCTTAATAAAATGGTGCTTTAGGATTGTGGTTAAATCTGCAGTAAAGTCATCAAGATTATGTTTTTACAAATCTGGTATATACAGTCTTAAGCCTTTTTTTTTTTTTTTTTTTGATTGTACAAATCACATTTTAGGAATGGTCTGGAATTTTGCATTTGCTGATCGTAGGATTCTTAACAACATTTCAAAAACTAAATAGACACTTTCATATCTTAGGCATTTAATAGATTTAAAATACTCATTTTAATTGTTTTCATGAGTTTTCAAACAGGTCCAAAAATGTGTTGTTTTCTAGGAAATGAGAGTTAATGCATCTAAAGAGTCCTCTAATTTAATTGCTTAGTAATTGCTTTTAAAGCATGAAAGATAGAGATAATTTTCACGCGCAGTAGGTATTGGGCCCCCAGCATACCATGTATATCACACTTTAAAATCTTAAAGCTAGATACGTGAATTTAAAAGAATGTCCACTGATGTTTTTAAGGAAATATGCCTTTTTTGTAAGTTAA</dnaseq>| | sequence = <dnaseq>CTGATAGATACTAAGATAAGAAATAACTGCAACCATAAATGTATACAGGTTATGTGTCCATGAGCCATCTCTTCAGTTTGCCCATAGATTTTTGTCTGTGGAATATTTTCTTGTTTCATCACACTGAATCGTTGGCCAAGAAATGCTTGAAAATCAAAACATTAATATCATCTTTCTTCTTTTTTTTAAAGGTGACTTAAGAGATTAAAATTAATTTGGTTGCTGTTGGTTCTGAACAAATAATGAGTTCTTTTATTTGAGGTATGCCATTTTGAAGACTGAGACGTTGGAGTTTTATCCTAGAGGATAAAGGAAATCTTTGGGAAAGTCAGTATTTTATATAGCAAGTAAGTAAATGTTTTTACCCAACATCTGCAATTGAATAGTTACCAACATTTAAGTAGAAAAATACCATTAAAGTTTGTTAATGAAACAAACTGTAGACTACTTATCACTGAAAGGATGAGAAAACCATCAAATTTCTTTGCCTGACATTGAAAACACTTCTATTACTATCAAGACAGTCGATGCATGTAATTTATATTGGAGCAGGAAGACATTTAGTACTTCTTAATAAAATGGTGCTTTAGGATTGTGGTTAAATCTGCAGTAAAGTCATCAAGATTATGTTTTTACAAATCTGGTATATACAGTCTTAAGCCTTTTTTTTTTTTTTTTTTTGATTGTACAAATCACATTTTAGGAATGGTCTGGAATTTTGCATTTGCTGATCGTAGGATTCTTAACAACATTTCAAAAACTAAATAGACACTTTCATATCTTAGGCATTTAATAGATTTAAAATACTCATTTTAATTGTTTTCATGAGTTTTCAAACAGGTCCAAAAATGTGTTGTTTTCTAGGAAATGAGAGTTAATGCATCTAAAGAGTCCTCTAATTTAATTGCTTAGTAATTGCTTTTAAAGCATGAAAGATAGAGATAATTTTCACGCGCAGTAGGTATTGGGCCCCCAGCATACCATGTATATCACACTTTAAAATCTTAAAGCTAGATACGTGAATTTAAAAGAATGTCCACTGATGTTTTTAAGGAAATATGCCTTTTTTGTAAGTTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:ENSG00000272888.1]][[Category:NONHSAG017952]][[Category:Transcripts]] |
Latest revision as of 17:36, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000555227.1 |
| Source |
Gencode19 |
| Same with |
NONHSAT049678 |
| Classification |
intergenic |
| Length |
1078 nt |
| Genomic location |
chr15+:93428554..93430215 |
| Exon number |
2 |
| Exons |
93428554..93428814,93429399..93430215 |
| Genome context |
|
| Sequence |
000001 CTGATAGATA CTAAGATAAG AAATAACTGC AACCATAAAT GTATACAGGT TATGTGTCCA TGAGCCATCT CTTCAGTTTG 000080
000081 CCCATAGATT TTTGTCTGTG GAATATTTTC TTGTTTCATC ACACTGAATC GTTGGCCAAG AAATGCTTGA AAATCAAAAC 000160 000161 ATTAATATCA TCTTTCTTCT TTTTTTTAAA GGTGACTTAA GAGATTAAAA TTAATTTGGT TGCTGTTGGT TCTGAACAAA 000240 000241 TAATGAGTTC TTTTATTTGA GGTATGCCAT TTTGAAGACT GAGACGTTGG AGTTTTATCC TAGAGGATAA AGGAAATCTT 000320 000321 TGGGAAAGTC AGTATTTTAT ATAGCAAGTA AGTAAATGTT TTTACCCAAC ATCTGCAATT GAATAGTTAC CAACATTTAA 000400 000401 GTAGAAAAAT ACCATTAAAG TTTGTTAATG AAACAAACTG TAGACTACTT ATCACTGAAA GGATGAGAAA ACCATCAAAT 000480 000481 TTCTTTGCCT GACATTGAAA ACACTTCTAT TACTATCAAG ACAGTCGATG CATGTAATTT ATATTGGAGC AGGAAGACAT 000560 000561 TTAGTACTTC TTAATAAAAT GGTGCTTTAG GATTGTGGTT AAATCTGCAG TAAAGTCATC AAGATTATGT TTTTACAAAT 000640 000641 CTGGTATATA CAGTCTTAAG CCTTTTTTTT TTTTTTTTTT TGATTGTACA AATCACATTT TAGGAATGGT CTGGAATTTT 000720 000721 GCATTTGCTG ATCGTAGGAT TCTTAACAAC ATTTCAAAAA CTAAATAGAC ACTTTCATAT CTTAGGCATT TAATAGATTT 000800 000801 AAAATACTCA TTTTAATTGT TTTCATGAGT TTTCAAACAG GTCCAAAAAT GTGTTGTTTT CTAGGAAATG AGAGTTAATG 000880 000881 CATCTAAAGA GTCCTCTAAT TTAATTGCTT AGTAATTGCT TTTAAAGCAT GAAAGATAGA GATAATTTTC ACGCGCAGTA 000960 000961 GGTATTGGGC CCCCAGCATA CCATGTATAT CACACTTTAA AATCTTAAAG CTAGATACGT GAATTTAAAA GAATGTCCAC 001040 001041 TGATGTTTTT AAGGAAATAT GCCTTTTTTG TAAGTTAA |
Predicted Small Protein
| Name | ENST00000555227.1_smProtein_38:199 |
| Length | 54 |
| Molecular weight | 6295.5002 |
| Aromaticity | 0.207547169811 |
| Instability index | 42.1981132075 |
| Isoelectric point | 9.14019775391 |
| Runs | 8 |
| Runs residual | 0.00931891394386 |
| Runs probability | 0.0289922275217 |
| Amino acid sequence | MYTGYVSMSHLFSLPIDFCLWNIFLFHHTESLAKKCLKIKTLISSFFFFLKVT |
| Secondary structure | LEEEEELLHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEELL |
| PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL |
| PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii |
