Difference between revisions of "Lnc-SOX1-3:4"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGTTCCTGTTCCCACGGCTGCCGCATCTATTATGCCCGCGCCCCTCCTGTTCCATGAAGGTTCTGGATGGAGGTCTCATGAGGGATTCGGGCAGAGGCTGATGAAAACATAAAACAGGCCAGTCTCCAGATTCAAGGGAGAGCTGGAGACAGCATTCATAGCTTGACCAGGCAGCTTTGACCAGGTGTGACAAAGGAAGCCCAGATGTCCCAGTCTATTCATGTTTCTATCACAAAATGCCTTTGAATTAGTAATTTATAAACAATAGAAATTTATTTCTTATCGTTCTGGAGGCCGGAAAGTCCACGATGAAGACACCAGCTGGTTCCCAGCCGGTGGGTGAGGACCCAGCCTCTGCTTCCAAGATGGCACCTCTGGGCTGCATCCTCACGTAGGGAGGGGGTGGGAGAAGAAAAGGGGCTGGGCATGCCCTTCAGCCTCCATTATAAGGCACGGATCCTGTTCACGAGGGAGGAGCCCGCATCACTCAGCCTCCTCTCAGAAGGCCCCACCTGTTAACATCACACGGGGCTTAGGTTTCACTGTACGTATTTGAGAGGCACCTACATTCAGACTATAGCACAGGCCAGCCCCCCACTGCTTCCCATACTGCCAGAGGCTGGGGCAGCTCCCCGGCCACCATGTTCCGCCAGCAGGATGGCTCCTGTCAGCCAGGTGTGCGGGACCTGGGCACACTGGCAAGAAGCAGGGAGGGCAGCCCAGACCCAGCCGCCCCATGGCTGCTCCGGGAGACTGTGTCCCTGTTGGAGACTGTGATAGATCCACGATCCGTCCCAGCCATTGCTCCATCTGTCTTGTCCATCAACCCCTCTGCCAGTATCATATGGTAAATAGTACCATGAATACTACAGTTCCAGGCACCCAGGTCACATCAGAGAACTGACGAGTTAGAGTTTAACGACACAGTTTGTAGCTGGGGGGGCTGCTTCAGAGCTGATGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGATGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGCCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGTCTGGAGCTGGTGACTAGGGTGGCATTGCTGTCTGGAGCTGGTGACTAGGGTGGCATTGCTGTCTGCAGCTGGTGACTGGGCGGCATTGCTGCTTGGTTGTTGTCAAGCCTCCCCAAGGTCTAAGGTCACCAGCAGGAATGCCCCGGAAGGAGAGGGCATAACTGTAGTTCTAGGAGTCTGAGGCCGTTTAACCTTTTCTCCATCATTTAGCAGCTTAGAAATTCATGTCATTCCCCATCTAGGCCTCAATTTCTCTACCTGTAAAATGGGATGTTTGACCCGACTTCCCTTTACCTGTGAAATCCTAGGACCTCATCATGTCACTTTCATGCAGCAGAGGCAGCGACCACTGGAGAGGGACACTAAGGACTGCTCCTGGATCTTGTTTAAACACAAGGAGCTGGGTTTCGAAGACTCCACGAGGGACTTTAGGACCCTACGTTACTTATCGACATAAAAAGAGGAGAAGATAAAGCCTCACAATTCTTCCTCCCACTTCCTCAGGTGGCCAATGCTGCTTTTATTGTGGAATGGGTTTGCCACAAAGCCTCAGGCTGATAGATAAGACTCGGGTCTCTGAAAAATGACAGCTTGACATCAAACCAACAAAATCAATTTCCAAATTGATTAAAACCATTCTCAAATAAAACTCCGCTGGCTTTTTCGAATCCCATTGTAAAAGGTCATCTGGGAAGTAAGCACCATATTTGTTTTAAGTTAGCAGAAGCCCGCAGCGCACTTGAGGCCCTACAGTTTCGGGGCCAGGCTGGGCTGACTGGGCCCACACACGCCTCCGCCCTCACCACAGCCGCCAGCTCCAGGGTGCCCACCAGAGCCAGGGCGGGAAGCCACCTCCAGGCTGGCCCTTCGTCTTGGCTCTTTGAAAACCTTTGGGTGAGGTGTGTCTCTTGGATCAAATAAACAATCAACAATTGGCTGCTGTCATTAAGGGAGAGGGTTAGTGCTGAGGGAGACATATCCTGGGGGCATTTTGTGTGATTATGGGGTGATTTATGATTCATAGAGATCAAGCGATAAACGTACTGAAATGCCAAGAAAGAAAATTGGAGAGAAAAATTGCTACAAATGTTATTCTTATTTTTTAAGGAGATTTATTTTATTTGCAAGATTTGTAATTGATGCAAAGCCTGTAAATGCAGGTGCCCCACTGTCAAATCCTCTCCCTTCCAGACCCTTCGTAAAGGCGTGACCTGCTTCAAGAAACACGATATTTGAAAATATGAAATCTACACATCGAGACACATTAAGAGTGACTGTTCGCATGACAAAAGGGTTTGCCACTTTACAAAAGATTCATCCCAGTGTTTCTTAAAGAACCATACAACTGTGATGTATTTTAAATGTCTTTCAATTAAAAGAATTGACTCATGCTC</dnaseq>| | sequence = <dnaseq>GGTTCCTGTTCCCACGGCTGCCGCATCTATTATGCCCGCGCCCCTCCTGTTCCATGAAGGTTCTGGATGGAGGTCTCATGAGGGATTCGGGCAGAGGCTGATGAAAACATAAAACAGGCCAGTCTCCAGATTCAAGGGAGAGCTGGAGACAGCATTCATAGCTTGACCAGGCAGCTTTGACCAGGTGTGACAAAGGAAGCCCAGATGTCCCAGTCTATTCATGTTTCTATCACAAAATGCCTTTGAATTAGTAATTTATAAACAATAGAAATTTATTTCTTATCGTTCTGGAGGCCGGAAAGTCCACGATGAAGACACCAGCTGGTTCCCAGCCGGTGGGTGAGGACCCAGCCTCTGCTTCCAAGATGGCACCTCTGGGCTGCATCCTCACGTAGGGAGGGGGTGGGAGAAGAAAAGGGGCTGGGCATGCCCTTCAGCCTCCATTATAAGGCACGGATCCTGTTCACGAGGGAGGAGCCCGCATCACTCAGCCTCCTCTCAGAAGGCCCCACCTGTTAACATCACACGGGGCTTAGGTTTCACTGTACGTATTTGAGAGGCACCTACATTCAGACTATAGCACAGGCCAGCCCCCCACTGCTTCCCATACTGCCAGAGGCTGGGGCAGCTCCCCGGCCACCATGTTCCGCCAGCAGGATGGCTCCTGTCAGCCAGGTGTGCGGGACCTGGGCACACTGGCAAGAAGCAGGGAGGGCAGCCCAGACCCAGCCGCCCCATGGCTGCTCCGGGAGACTGTGTCCCTGTTGGAGACTGTGATAGATCCACGATCCGTCCCAGCCATTGCTCCATCTGTCTTGTCCATCAACCCCTCTGCCAGTATCATATGGTAAATAGTACCATGAATACTACAGTTCCAGGCACCCAGGTCACATCAGAGAACTGACGAGTTAGAGTTTAACGACACAGTTTGTAGCTGGGGGGGCTGCTTCAGAGCTGATGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGATGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGCCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGTCTGGAGCTGGTGACTGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGCCTGGAGCTGGTGACTAGGGTGGCATTGCTGTCTGGAGCTGGTGACTAGGGTGGCATTGCTGTCTGGAGCTGGTGACTAGGGTGGCATTGCTGTCTGCAGCTGGTGACTGGGCGGCATTGCTGCTTGGTTGTTGTCAAGCCTCCCCAAGGTCTAAGGTCACCAGCAGGAATGCCCCGGAAGGAGAGGGCATAACTGTAGTTCTAGGAGTCTGAGGCCGTTTAACCTTTTCTCCATCATTTAGCAGCTTAGAAATTCATGTCATTCCCCATCTAGGCCTCAATTTCTCTACCTGTAAAATGGGATGTTTGACCCGACTTCCCTTTACCTGTGAAATCCTAGGACCTCATCATGTCACTTTCATGCAGCAGAGGCAGCGACCACTGGAGAGGGACACTAAGGACTGCTCCTGGATCTTGTTTAAACACAAGGAGCTGGGTTTCGAAGACTCCACGAGGGACTTTAGGACCCTACGTTACTTATCGACATAAAAAGAGGAGAAGATAAAGCCTCACAATTCTTCCTCCCACTTCCTCAGGTGGCCAATGCTGCTTTTATTGTGGAATGGGTTTGCCACAAAGCCTCAGGCTGATAGATAAGACTCGGGTCTCTGAAAAATGACAGCTTGACATCAAACCAACAAAATCAATTTCCAAATTGATTAAAACCATTCTCAAATAAAACTCCGCTGGCTTTTTCGAATCCCATTGTAAAAGGTCATCTGGGAAGTAAGCACCATATTTGTTTTAAGTTAGCAGAAGCCCGCAGCGCACTTGAGGCCCTACAGTTTCGGGGCCAGGCTGGGCTGACTGGGCCCACACACGCCTCCGCCCTCACCACAGCCGCCAGCTCCAGGGTGCCCACCAGAGCCAGGGCGGGAAGCCACCTCCAGGCTGGCCCTTCGTCTTGGCTCTTTGAAAACCTTTGGGTGAGGTGTGTCTCTTGGATCAAATAAACAATCAACAATTGGCTGCTGTCATTAAGGGAGAGGGTTAGTGCTGAGGGAGACATATCCTGGGGGCATTTTGTGTGATTATGGGGTGATTTATGATTCATAGAGATCAAGCGATAAACGTACTGAAATGCCAAGAAAGAAAATTGGAGAGAAAAATTGCTACAAATGTTATTCTTATTTTTTAAGGAGATTTATTTTATTTGCAAGATTTGTAATTGATGCAAAGCCTGTAAATGCAGGTGCCCCACTGTCAAATCCTCTCCCTTCCAGACCCTTCGTAAAGGCGTGACCTGCTTCAAGAAACACGATATTTGAAAATATGAAATCTACACATCGAGACACATTAAGAGTGACTGTTCGCATGACAAAAGGGTTTGCCACTTTACAAAAGATTCATCCCAGTGTTTCTTAAAGAACCATACAACTGTGATGTATTTTAAATGTCTTTCAATTAAAAGAATTGACTCATGCTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-SOX1-3]][[Category:Transcripts]] |
Latest revision as of 05:22, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
lnc-SOX1-3:4 |
| Source |
LNCipedia2.1 |
| Same with |
, |
| Classification |
intergenic |
| Length |
2827 nt |
| Genomic location |
chr13+:112851664..112855312 |
| Exon number |
2 |
| Exons |
112851664..112851722,112852545..112855312 |
| Genome context |
|
| Sequence |
000001 GGTTCCTGTT CCCACGGCTG CCGCATCTAT TATGCCCGCG CCCCTCCTGT TCCATGAAGG TTCTGGATGG AGGTCTCATG 000080
000081 AGGGATTCGG GCAGAGGCTG ATGAAAACAT AAAACAGGCC AGTCTCCAGA TTCAAGGGAG AGCTGGAGAC AGCATTCATA 000160 000161 GCTTGACCAG GCAGCTTTGA CCAGGTGTGA CAAAGGAAGC CCAGATGTCC CAGTCTATTC ATGTTTCTAT CACAAAATGC 000240 000241 CTTTGAATTA GTAATTTATA AACAATAGAA ATTTATTTCT TATCGTTCTG GAGGCCGGAA AGTCCACGAT GAAGACACCA 000320 000321 GCTGGTTCCC AGCCGGTGGG TGAGGACCCA GCCTCTGCTT CCAAGATGGC ACCTCTGGGC TGCATCCTCA CGTAGGGAGG 000400 000401 GGGTGGGAGA AGAAAAGGGG CTGGGCATGC CCTTCAGCCT CCATTATAAG GCACGGATCC TGTTCACGAG GGAGGAGCCC 000480 000481 GCATCACTCA GCCTCCTCTC AGAAGGCCCC ACCTGTTAAC ATCACACGGG GCTTAGGTTT CACTGTACGT ATTTGAGAGG 000560 000561 CACCTACATT CAGACTATAG CACAGGCCAG CCCCCCACTG CTTCCCATAC TGCCAGAGGC TGGGGCAGCT CCCCGGCCAC 000640 000641 CATGTTCCGC CAGCAGGATG GCTCCTGTCA GCCAGGTGTG CGGGACCTGG GCACACTGGC AAGAAGCAGG GAGGGCAGCC 000720 000721 CAGACCCAGC CGCCCCATGG CTGCTCCGGG AGACTGTGTC CCTGTTGGAG ACTGTGATAG ATCCACGATC CGTCCCAGCC 000800 000801 ATTGCTCCAT CTGTCTTGTC CATCAACCCC TCTGCCAGTA TCATATGGTA AATAGTACCA TGAATACTAC AGTTCCAGGC 000880 000881 ACCCAGGTCA CATCAGAGAA CTGACGAGTT AGAGTTTAAC GACACAGTTT GTAGCTGGGG GGGCTGCTTC AGAGCTGATG 000960 000961 ACTGGGTGGC ATTGCTGCCT GGAGCTGGTG ACTGGGTGGC ATTGCTGTCT GGAGCTGGTG ACTGGGTGGC ATTGCTGTCT 001040 001041 GGAGCTGATG ACTGGGTGGC ATTGCTGCCT GGAGCTGGTG ACTGGGTGGC ATTGCTGCCT GGAGCTGGTG ACTAGGGTGG 001120 001121 CATTGCTGCC TGGAGCTGGT GACTGGGTGG CATTGCTGTC TGGAGCTGGT GACTGGGTGG CATTGCTGCC TGGAGCTGGT 001200 001201 GACTGGGTGG CATTGCTGTC TGGAGCTGGT GACTGGGTGG CATTGCTGTC TGGAGCTGGT GACTGGGTGG CATTGCTGTC 001280 001281 TGGAGCTGGT GACTGGGTGG CATTGCTGCC TGGAGCTGGT GACTAGGGTG GCATTGCTGC CTGGAGCTGG TGACTAGGGT 001360 001361 GGCATTGCTG CCTGGAGCTG GTGACTAGGG TGGCATTGCT GCCTGGAGCT GGTGACTAGG GTGGCATTGC TGTCTGGAGC 001440 001441 TGGTGACTAG GGTGGCATTG CTGTCTGGAG CTGGTGACTA GGGTGGCATT GCTGTCTGCA GCTGGTGACT GGGCGGCATT 001520 001521 GCTGCTTGGT TGTTGTCAAG CCTCCCCAAG GTCTAAGGTC ACCAGCAGGA ATGCCCCGGA AGGAGAGGGC ATAACTGTAG 001600 001601 TTCTAGGAGT CTGAGGCCGT TTAACCTTTT CTCCATCATT TAGCAGCTTA GAAATTCATG TCATTCCCCA TCTAGGCCTC 001680 001681 AATTTCTCTA CCTGTAAAAT GGGATGTTTG ACCCGACTTC CCTTTACCTG TGAAATCCTA GGACCTCATC ATGTCACTTT 001760 001761 CATGCAGCAG AGGCAGCGAC CACTGGAGAG GGACACTAAG GACTGCTCCT GGATCTTGTT TAAACACAAG GAGCTGGGTT 001840 001841 TCGAAGACTC CACGAGGGAC TTTAGGACCC TACGTTACTT ATCGACATAA AAAGAGGAGA AGATAAAGCC TCACAATTCT 001920 001921 TCCTCCCACT TCCTCAGGTG GCCAATGCTG CTTTTATTGT GGAATGGGTT TGCCACAAAG CCTCAGGCTG ATAGATAAGA 002000 002001 CTCGGGTCTC TGAAAAATGA CAGCTTGACA TCAAACCAAC AAAATCAATT TCCAAATTGA TTAAAACCAT TCTCAAATAA 002080 002081 AACTCCGCTG GCTTTTTCGA ATCCCATTGT AAAAGGTCAT CTGGGAAGTA AGCACCATAT TTGTTTTAAG TTAGCAGAAG 002160 002161 CCCGCAGCGC ACTTGAGGCC CTACAGTTTC GGGGCCAGGC TGGGCTGACT GGGCCCACAC ACGCCTCCGC CCTCACCACA 002240 002241 GCCGCCAGCT CCAGGGTGCC CACCAGAGCC AGGGCGGGAA GCCACCTCCA GGCTGGCCCT TCGTCTTGGC TCTTTGAAAA 002320 002321 CCTTTGGGTG AGGTGTGTCT CTTGGATCAA ATAAACAATC AACAATTGGC TGCTGTCATT AAGGGAGAGG GTTAGTGCTG 002400 002401 AGGGAGACAT ATCCTGGGGG CATTTTGTGT GATTATGGGG TGATTTATGA TTCATAGAGA TCAAGCGATA AACGTACTGA 002480 002481 AATGCCAAGA AAGAAAATTG GAGAGAAAAA TTGCTACAAA TGTTATTCTT ATTTTTTAAG GAGATTTATT TTATTTGCAA 002560 002561 GATTTGTAAT TGATGCAAAG CCTGTAAATG CAGGTGCCCC ACTGTCAAAT CCTCTCCCTT CCAGACCCTT CGTAAAGGCG 002640 002641 TGACCTGCTT CAAGAAACAC GATATTTGAA AATATGAAAT CTACACATCG AGACACATTA AGAGTGACTG TTCGCATGAC 002720 002721 AAAAGGGTTT GCCACTTTAC AAAAGATTCA TCCCAGTGTT TCTTAAAGAA CCATACAACT GTGATGTATT TTAAATGTCT 002800 002801 TTCAATTAAA AGAATTGACT CATGCTC |
