Difference between revisions of "Lnc-C14orf101-5:1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
Chunlei Yu (talk | contribs) |
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==Annotated Information== | ==Annotated Information== | ||
| − | === | + | ===Name=== |
| − | + | Otx2os1: OTX2 opposite strand transcript 1 | |
| + | |||
| + | ===Characteristics=== | ||
| + | Alternatively spliced transcripts found in a head to head arrangement with Otx2. | ||
| + | |||
| + | Mouse ~750nuc. Humans ~2.4kb. | ||
| + | |||
| + | Contains a number of repeat sequences (human). Mostly free of repeats (mouse). | ||
===Function=== | ===Function=== | ||
Please input function information here. | Please input function information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Expression restricted to retina in panel of adult tissues (retina also shows the highest expression of Otx2). | ||
| + | |||
| + | Otx2 and Otx2os1 had a partially complementary expression pattern in adult retinal layers. Otx2 was predominately expressed in the outer nuclear layer (ONL) and into the inner nuclear layer (INL), while Otx2os was predominately expressed in the ganglion cell layer (GCL) and into the INL. | ||
| + | |||
| + | ===Conservation=== | ||
| + | Low conservation between mouse and human transcripts. | ||
| + | |||
| + | ===Misc=== | ||
| + | Otx2 is a transcription factor involved in brain and eye development. | ||
| + | |||
| + | Otx2os1 Mouse: GeneID: 606497. Human GeneID: 100309464 | ||
| + | |||
| + | ===Transcriptomic Nomeclature=== | ||
| + | Please input transcriptomic nomeclature information here. | ||
===Regulation=== | ===Regulation=== | ||
Please input regulation information here. | Please input regulation information here. | ||
| − | |||
| − | |||
| − | |||
===Allelic Information and Variation=== | ===Allelic Information and Variation=== | ||
| Line 26: | Line 46: | ||
==References== | ==References== | ||
| − | + | [http://www.lncrnadb.org/Otx2os1/ Annotation originally sourced from lncRNAdb.] | |
{{basic| | {{basic| | ||
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sequence = <dnaseq>AGCAATGTGCTGAAGCTCTTAAAAGATTGGATCTGAGAGAGAGAGACAGAGAGGAGAAAGAGAACTAGAGACAGAGAGAGGCAGACAAGGAAGGGGGGGGGGGGTGAAAGACTTTCTTTTTCTTTCTAGAGGAATTCTGCCCAGACTCTGCAGCAGTTGGTAGCAGGCAAGCTTTCTCCTGGGTGTCGCCTTGAAAAGTTGCAAAATTGCTCTTCACCTGTAAGAACATGCTCTTTATCTTCCAGTCTCTTCTTGTCAATTTGGAAATTGCAGACTGCCCGGCTCAGGCTGAAGGGCAGTGGCACAATCTCGGCTCACCGAAGCCTCCACCTCCCAGATTCAAGCGATTCTCATGCCTCAGCTTCCCAAGTAGCTGGGATTACAGGCTTGTCAAAGAAAATTTCTTAATGAAAGCGATGATGATGTCGACCTTAACCTCCAGAATGAAGATACTTCAGGACTTAGTCTGAGAAGGCTACCAAGTCATGATGGAGAAAAACGTGAAACCACTGATTCAGTTCATTGCAAATTCATTCTACCAAACCTTACCTGGCTCTTGTTGCTGCTTGGTAGTCCTTTTATTAATCTCTTGGAGACTCACTGATTAGTTTCCTCCATTGATCATCTAAAAGCTTTTTTCATATTTTTGAAACTCACTGTTTGATCTCCCCTTCCCCTTGTACTCGGAAGATGATCTTGCTTTCTGCTTTACTGAGAAGTTCAAGGTTATCTGCAATCTCCTTCAACTTTTCACTCCTATCCTATTTTCTATTTTCCTTCATCTCTTGCTTCCTCTGCTCTTTTGTTTTAGGGAAAGAAACAGTCCCTTTATTTCTAGGTTGAACTCAACTTCTGCAGGACTTTTGTCTGTAAATTGTACTTCTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGGTCACTGCAACCTCTACCTCCCAGGTTAAAGCAATTCTCCTGCCTCAGCTTCCTGAGTAGCTGGGATTACAGGCGCCACTCCCGGCTAAATTTTTGTATTTTTAGTAGAGACGGGGTTTGGCTATGTTGGCCAGGCTGGTCTCAAATTCCTGACTTCAGGTGATGCACCCACCTCCGCCCGCCTCGGCCTCCCAAAGTGCTGGCATTACAGATGTGAGCCACCGTGCCCAGCTAAATTGTACCTTCTGTTCCTTAAAAATCCTAAAATCCCTTGTTGTAGGTTCTTTAATTTTGAGAAAGTAATAAATAAAGCACAGAGATTAATAAGACAAATATGCTTGTTTGCAAAACCCAGAATTGACTGTTAATATTATCATACACTGGCTTATCCTTTTTCTAATAAAAAAGTTTCAGATAAAGTTGAAGTTCCCCTTGACCTACCTTTTCAGTCCTGTTGCCTGCATTCCCTCCCTCAAAGCAACCCTATATAATATCGGCATGTATTCTTTGAGGTCATTAAAGAATACATTTATGTGCCCATATACATAATAATGTGTGTGATTGTTTAGTGGGTAATTTAAGAATTTACATATTTAATATTCACAGTCTATTTTGTGATGTTTCTGTCTTCTATCCATGCTAGTATATGTAGAGCTATTTGTAAGTTCCCTGAGGGCAGGGACTTTGTCTTGCTCATTGCTGAATCTCCAGCACCTAGAATAGCATTTGGCATATAGCAAACATTCAATCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTTCTTTCTCTCTCTCTTTTTCTTTCTTTCTTTCTTTCTTTTCTTTCTTTCTCTCTCTTTCTCTCTCCCTCTCTCCCTCTCTCCTTTCCTTTCTCTTTCTTTCTTTCTTTATTCTTCCTTTTTTTTTGTTGACAGGATCTCACTCTGTCTCCCAGGCTGGAGTGCATTGGCACCATCACTGCTCACTGCAACCTCCTCCTTCCAGGCTCAAGCAATCCTCCCATTTCAGCCTCCCAAGTGGCTGGGACTACAGGAGTGCACCACCTTGCCTGGATAATTTTTTGTATTTTTTTTTTGGAGAGACAGGGTTTCAGCATGTTGCCCAGACTGGTCTCAAACTCCTTTGCTCAAGTGTTCCTCCTGCCTTGGCCTCCCAAAGTGCTGGGACTATAGATGTGAGCCACTATGCCAGCCAATATATGTATATATTTCTTAAGTGAGTTAATATCATTCATTTTTAACTGCTGTGTAGTAATCAACTGTATGAATATTCCACATATCACATTTTATTTATTCATTCTCCCACCAGTAGACAATGTGTGCTTTCCTAATTTCCATGCTTCTTATTACAAATATTGTTGTGGAACAGCCTTGTACAAGTCTCCTGTGCCTATGTTTGAGTTGTATCAGAGTTGGAATTGCTGCTTGTCACAAATAAACTTTAAACTAGATTTAGCCAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>AGCAATGTGCTGAAGCTCTTAAAAGATTGGATCTGAGAGAGAGAGACAGAGAGGAGAAAGAGAACTAGAGACAGAGAGAGGCAGACAAGGAAGGGGGGGGGGGGTGAAAGACTTTCTTTTTCTTTCTAGAGGAATTCTGCCCAGACTCTGCAGCAGTTGGTAGCAGGCAAGCTTTCTCCTGGGTGTCGCCTTGAAAAGTTGCAAAATTGCTCTTCACCTGTAAGAACATGCTCTTTATCTTCCAGTCTCTTCTTGTCAATTTGGAAATTGCAGACTGCCCGGCTCAGGCTGAAGGGCAGTGGCACAATCTCGGCTCACCGAAGCCTCCACCTCCCAGATTCAAGCGATTCTCATGCCTCAGCTTCCCAAGTAGCTGGGATTACAGGCTTGTCAAAGAAAATTTCTTAATGAAAGCGATGATGATGTCGACCTTAACCTCCAGAATGAAGATACTTCAGGACTTAGTCTGAGAAGGCTACCAAGTCATGATGGAGAAAAACGTGAAACCACTGATTCAGTTCATTGCAAATTCATTCTACCAAACCTTACCTGGCTCTTGTTGCTGCTTGGTAGTCCTTTTATTAATCTCTTGGAGACTCACTGATTAGTTTCCTCCATTGATCATCTAAAAGCTTTTTTCATATTTTTGAAACTCACTGTTTGATCTCCCCTTCCCCTTGTACTCGGAAGATGATCTTGCTTTCTGCTTTACTGAGAAGTTCAAGGTTATCTGCAATCTCCTTCAACTTTTCACTCCTATCCTATTTTCTATTTTCCTTCATCTCTTGCTTCCTCTGCTCTTTTGTTTTAGGGAAAGAAACAGTCCCTTTATTTCTAGGTTGAACTCAACTTCTGCAGGACTTTTGTCTGTAAATTGTACTTCTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGGTCACTGCAACCTCTACCTCCCAGGTTAAAGCAATTCTCCTGCCTCAGCTTCCTGAGTAGCTGGGATTACAGGCGCCACTCCCGGCTAAATTTTTGTATTTTTAGTAGAGACGGGGTTTGGCTATGTTGGCCAGGCTGGTCTCAAATTCCTGACTTCAGGTGATGCACCCACCTCCGCCCGCCTCGGCCTCCCAAAGTGCTGGCATTACAGATGTGAGCCACCGTGCCCAGCTAAATTGTACCTTCTGTTCCTTAAAAATCCTAAAATCCCTTGTTGTAGGTTCTTTAATTTTGAGAAAGTAATAAATAAAGCACAGAGATTAATAAGACAAATATGCTTGTTTGCAAAACCCAGAATTGACTGTTAATATTATCATACACTGGCTTATCCTTTTTCTAATAAAAAAGTTTCAGATAAAGTTGAAGTTCCCCTTGACCTACCTTTTCAGTCCTGTTGCCTGCATTCCCTCCCTCAAAGCAACCCTATATAATATCGGCATGTATTCTTTGAGGTCATTAAAGAATACATTTATGTGCCCATATACATAATAATGTGTGTGATTGTTTAGTGGGTAATTTAAGAATTTACATATTTAATATTCACAGTCTATTTTGTGATGTTTCTGTCTTCTATCCATGCTAGTATATGTAGAGCTATTTGTAAGTTCCCTGAGGGCAGGGACTTTGTCTTGCTCATTGCTGAATCTCCAGCACCTAGAATAGCATTTGGCATATAGCAAACATTCAATCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTTCTTTCTCTCTCTCTTTTTCTTTCTTTCTTTCTTTCTTTTCTTTCTTTCTCTCTCTTTCTCTCTCCCTCTCTCCCTCTCTCCTTTCCTTTCTCTTTCTTTCTTTCTTTATTCTTCCTTTTTTTTTGTTGACAGGATCTCACTCTGTCTCCCAGGCTGGAGTGCATTGGCACCATCACTGCTCACTGCAACCTCCTCCTTCCAGGCTCAAGCAATCCTCCCATTTCAGCCTCCCAAGTGGCTGGGACTACAGGAGTGCACCACCTTGCCTGGATAATTTTTTGTATTTTTTTTTTGGAGAGACAGGGTTTCAGCATGTTGCCCAGACTGGTCTCAAACTCCTTTGCTCAAGTGTTCCTCCTGCCTTGGCCTCCCAAAGTGCTGGGACTATAGATGTGAGCCACTATGCCAGCCAATATATGTATATATTTCTTAAGTGAGTTAATATCATTCATTTTTAACTGCTGTGTAGTAATCAACTGTATGAATATTCCACATATCACATTTTATTTATTCATTCTCCCACCAGTAGACAATGTGTGCTTTCCTAATTTCCATGCTTCTTATTACAAATATTGTTGTGGAACAGCCTTGTACAAGTCTCCTGTGCCTATGTTTGAGTTGTATCAGAGTTGGAATTGCTGCTTGTCACAAATAAACTTTAAACTAGATTTAGCCAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:Transcripts]] |
Latest revision as of 03:36, 26 August 2015
Please input one-sentence summary here.
Contents
Annotated Information
Name
Otx2os1: OTX2 opposite strand transcript 1
Characteristics
Alternatively spliced transcripts found in a head to head arrangement with Otx2.
Mouse ~750nuc. Humans ~2.4kb.
Contains a number of repeat sequences (human). Mostly free of repeats (mouse).
Function
Please input function information here.
Expression
Expression restricted to retina in panel of adult tissues (retina also shows the highest expression of Otx2).
Otx2 and Otx2os1 had a partially complementary expression pattern in adult retinal layers. Otx2 was predominately expressed in the outer nuclear layer (ONL) and into the inner nuclear layer (INL), while Otx2os was predominately expressed in the ganglion cell layer (GCL) and into the INL.
Conservation
Low conservation between mouse and human transcripts.
Misc
Otx2 is a transcription factor involved in brain and eye development.
Otx2os1 Mouse: GeneID: 606497. Human GeneID: 100309464
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Annotation originally sourced from lncRNAdb.
Basic Information
| Transcript ID |
lnc-C14orf101-5:1 |
| Source |
LNCipedia2.1 |
| Same with |
, |
| Classification |
intergenic |
| Length |
2440 nt |
| Genomic location |
chr14+:57279900..57397550 |
| Exon number |
, |
| Exons |
, |
| Genome context |
|
| Sequence |
000001 AGCAATGTGC TGAAGCTCTT AAAAGATTGG ATCTGAGAGA GAGAGACAGA GAGGAGAAAG AGAACTAGAG ACAGAGAGAG 000080
000081 GCAGACAAGG AAGGGGGGGG GGGGTGAAAG ACTTTCTTTT TCTTTCTAGA GGAATTCTGC CCAGACTCTG CAGCAGTTGG 000160 000161 TAGCAGGCAA GCTTTCTCCT GGGTGTCGCC TTGAAAAGTT GCAAAATTGC TCTTCACCTG TAAGAACATG CTCTTTATCT 000240 000241 TCCAGTCTCT TCTTGTCAAT TTGGAAATTG CAGACTGCCC GGCTCAGGCT GAAGGGCAGT GGCACAATCT CGGCTCACCG 000320 000321 AAGCCTCCAC CTCCCAGATT CAAGCGATTC TCATGCCTCA GCTTCCCAAG TAGCTGGGAT TACAGGCTTG TCAAAGAAAA 000400 000401 TTTCTTAATG AAAGCGATGA TGATGTCGAC CTTAACCTCC AGAATGAAGA TACTTCAGGA CTTAGTCTGA GAAGGCTACC 000480 000481 AAGTCATGAT GGAGAAAAAC GTGAAACCAC TGATTCAGTT CATTGCAAAT TCATTCTACC AAACCTTACC TGGCTCTTGT 000560 000561 TGCTGCTTGG TAGTCCTTTT ATTAATCTCT TGGAGACTCA CTGATTAGTT TCCTCCATTG ATCATCTAAA AGCTTTTTTC 000640 000641 ATATTTTTGA AACTCACTGT TTGATCTCCC CTTCCCCTTG TACTCGGAAG ATGATCTTGC TTTCTGCTTT ACTGAGAAGT 000720 000721 TCAAGGTTAT CTGCAATCTC CTTCAACTTT TCACTCCTAT CCTATTTTCT ATTTTCCTTC ATCTCTTGCT TCCTCTGCTC 000800 000801 TTTTGTTTTA GGGAAAGAAA CAGTCCCTTT ATTTCTAGGT TGAACTCAAC TTCTGCAGGA CTTTTGTCTG TAAATTGTAC 000880 000881 TTCTTTTTTT TTGAGACAGA GTCTCGCTCT GTCACCCAGG CTGGAGTGCA GTGGCATGAT CTCAGGTCAC TGCAACCTCT 000960 000961 ACCTCCCAGG TTAAAGCAAT TCTCCTGCCT CAGCTTCCTG AGTAGCTGGG ATTACAGGCG CCACTCCCGG CTAAATTTTT 001040 001041 GTATTTTTAG TAGAGACGGG GTTTGGCTAT GTTGGCCAGG CTGGTCTCAA ATTCCTGACT TCAGGTGATG CACCCACCTC 001120 001121 CGCCCGCCTC GGCCTCCCAA AGTGCTGGCA TTACAGATGT GAGCCACCGT GCCCAGCTAA ATTGTACCTT CTGTTCCTTA 001200 001201 AAAATCCTAA AATCCCTTGT TGTAGGTTCT TTAATTTTGA GAAAGTAATA AATAAAGCAC AGAGATTAAT AAGACAAATA 001280 001281 TGCTTGTTTG CAAAACCCAG AATTGACTGT TAATATTATC ATACACTGGC TTATCCTTTT TCTAATAAAA AAGTTTCAGA 001360 001361 TAAAGTTGAA GTTCCCCTTG ACCTACCTTT TCAGTCCTGT TGCCTGCATT CCCTCCCTCA AAGCAACCCT ATATAATATC 001440 001441 GGCATGTATT CTTTGAGGTC ATTAAAGAAT ACATTTATGT GCCCATATAC ATAATAATGT GTGTGATTGT TTAGTGGGTA 001520 001521 ATTTAAGAAT TTACATATTT AATATTCACA GTCTATTTTG TGATGTTTCT GTCTTCTATC CATGCTAGTA TATGTAGAGC 001600 001601 TATTTGTAAG TTCCCTGAGG GCAGGGACTT TGTCTTGCTC ATTGCTGAAT CTCCAGCACC TAGAATAGCA TTTGGCATAT 001680 001681 AGCAAACATT CAATCTTTCT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTCTTTCCT TCCTTCCTTT CTTTCTCTCT 001760 001761 CTCTTTTTCT TTCTTTCTTT CTTTCTTTTC TTTCTTTCTC TCTCTTTCTC TCTCCCTCTC TCCCTCTCTC CTTTCCTTTC 001840 001841 TCTTTCTTTC TTTCTTTATT CTTCCTTTTT TTTTGTTGAC AGGATCTCAC TCTGTCTCCC AGGCTGGAGT GCATTGGCAC 001920 001921 CATCACTGCT CACTGCAACC TCCTCCTTCC AGGCTCAAGC AATCCTCCCA TTTCAGCCTC CCAAGTGGCT GGGACTACAG 002000 002001 GAGTGCACCA CCTTGCCTGG ATAATTTTTT GTATTTTTTT TTTGGAGAGA CAGGGTTTCA GCATGTTGCC CAGACTGGTC 002080 002081 TCAAACTCCT TTGCTCAAGT GTTCCTCCTG CCTTGGCCTC CCAAAGTGCT GGGACTATAG ATGTGAGCCA CTATGCCAGC 002160 002161 CAATATATGT ATATATTTCT TAAGTGAGTT AATATCATTC ATTTTTAACT GCTGTGTAGT AATCAACTGT ATGAATATTC 002240 002241 CACATATCAC ATTTTATTTA TTCATTCTCC CACCAGTAGA CAATGTGTGC TTTCCTAATT TCCATGCTTC TTATTACAAA 002320 002321 TATTGTTGTG GAACAGCCTT GTACAAGTCT CCTGTGCCTA TGTTTGAGTT GTATCAGAGT TGGAATTGCT GCTTGTCACA 002400 002401 AATAAACTTT AAACTAGATT TAGCCAAAAA AAAAAAAAAA |
