Difference between revisions of "Lnc-TNKS-1:1"

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==Annotated Information==
 
==Annotated Information==
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===Transcriptomic Nomeclature===
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===Name===
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Please input transcriptomic nomeclature information here.
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RNCR3: Retinal noncoding RNA 3
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===Characteristics===
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Intergenic, four exon transcript in mouse.
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Gene contains a highly expressed, brain specific microRNA (mir124a-1) in an exon ([http://www.ncbi.nlm.nih.gov/pubmed/12007417 Lagos-Quintana (2002)]).
  
 
===Function===
 
===Function===
 
Please input function information here.
 
Please input function information here.
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===Expression===
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Dynamic expression in mouse retinal development [http://www.ncbi.nlm.nih.gov/pubmed/15226823 (Blackshaw (2004))].
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Expressed throughout adult mouse brain with enriched expression in hippocampus subfields,  Purkinje neurons of the cerebellum and the mitral layer of the olfactory bulb [http://www.ncbi.nlm.nih.gov/pubmed/20137068 (Mercer (2010))].
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Up-regulated during differentiation of GABAergic neurons in culture but downregulated during oligodendrocyte differentiation [http://www.ncbi.nlm.nih.gov/pubmed/20137068 (Mercer (2010))].
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===Conservation===
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LncRNA is conserved in mammals and overlaps the LOC157627 noncoding Refseq gene in humans [http://www.ncbi.nlm.nih.gov/pubmed/20137068 (Mercer (2010))].
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===Misc===
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Oct4, Nanog transcription factors are reported to bind to locus [http://www.ncbi.nlm.nih.gov/pubmed/19182780 (Guttman (2009))].
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===Transcriptomic Nomeclature===
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Please input transcriptomic nomeclature information here.
  
 
===Regulation===
 
===Regulation===
 
Please input regulation information here.
 
Please input regulation information here.
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===Expression===
 
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===Allelic Information and Variation===
 
===Allelic Information and Variation===
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==References==
 
==References==
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Please input cited references here.
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[http://www.lncrnadb.org/rncr3/ Annotation originally sourced from lncRNAdb.]
  
 
{{basic|
 
{{basic|
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sequence = <dnaseq>CGCCCTCCGCAGACCTCCGCGCAGCGGCCGCGGGCGCGAGGGGAGGGGTCTGGAGCTCCCTCCGGCTGCCTGTCCCGCACCGGAGCCCGTGGGGTGGGGAGGTGTGCAGCCTGTGACAGACAGGGGCTTAGAGATGCAAACAGACTCAGGGAGAGAAACAGAAGCTGATTCTGTGACAGAAGCAGATCTGTGCAGCACAGATGCGGTGTGCGTGGGGAGGGGGTCGCCTGGGAGCGCATTGCGGAGTGCTTGTGTGTGCAGATTTTTCTCTGGGCTCAGGACTCATTGTATGTGGGTCAACACCTTCCTCCGTGACTGTGTTTTTGTTCTGAGCTGAGTTTTTTGGTTTGCCCTTAAAAAAATAATAATTTGGCATCCAGAGACTGGCAGACTGCCTCAGGGCCTGGACTGCGGATATATTGTGTTCTGCTTGAGGTTTGGGGAGGAGGGCAGGCGGTAGGAAGGGAGAGGGGGAGCTGTTTGTCACACTTTGCTGTAGAGCTGAGAGCACCTGACAAGCTTAAGGAAGTCGTTGGGCTATGTGGACAAGAAGGAGCCAGCTCCCAGCGGGTTCACAAGCTCTATCGGAGTTGAAAGCGTGGTCATGGCTCTAAGGAGCACCTCACGCCCTCCCTGTAGCTGTTATTGCAGTTTCAGGCAGAGATCCAGGAGCTGCAGAGGAAGGGAGAGGCACAATAACCTACATGGACCCAAGGGAGACATGTGTTCCTTTAAAAATGTGAACAGAAGGAAAAACAGAATGTGTGCAACTGGGGGTCTGAGGAAAGACTGTTTTGAAAGAGGCTGTCAGGGAATGGAAAGGGTTAAGCTTTTCATCCTGAAGAACCTGCTTCCCAAATCAGGCCTTCCTCCCATCACTAGACCCTGAGCAGCAGCTGGTCCTAGAGACCCCCCTCGTACTGCGCTGCCACAGTCTCATCCCATTTCCAGCTCTGTATTAACCACCAAGCTGCAGCGGATGGGGCAAGACCTAAGCTCATTAATTTCCAGGTGGAGGAAATGGAGGAGGGGCAGGTCCCTGCAGTAGAGGGAGGAGCAGAGAAAGGAGGCCAAGAGCTGGATCCTTCTGCCCAGGAAGCCTGCTGCATCCCTTCCCCCGAGCATGGCAGAGGCCTGGCTTTGCAAGGCCAAGGCCATAAGGGATGCTTAGGAGATTAATTTGATTCCTGACACAATAATCAAGCCCTAAGAGTCTCCACTGAAGCTTACTGAGGACTTCTTTCCTCTCCAAAGCCTCAGTCTAGCCTGCTAAATAAATTAGTATTCAGTGATGCCTTGGATCAGGGCCCCTCCCCGGCCTCAGTTTCCCCAAATATTTATTAAGTACCTACTGTGTGCAATCCTTGTGTAATTATTACCTCTTAGGCTCTTCATTTGCCCTCCTAAAGCAGTGTTTAGAGTCAGGCAGAGGTTAAGTGTGTTGCACCTCACCTAGATACTTCCAGAACCTTCTCTGGGTCTGCAGAATGTGGCACAACCTGCTTGCCCCCGCAGAGAGAAAGCTGCAGTGCACATCCTGCAGACTGCAGGTGCTGGGCTGCCTCTGGAGTCCCAGAAGGCAAGCTTGGCTGCAGGACAGAAAGGGAGAACAGCTTCTCTCACCCCTGAGCCTTCACAAGCCCTTGTCTATTTGCCGTTGCCTTCAAAATATACCTCCCCCGAAACCAGTAGCTTTCTGAGTCCTGGTGTCCCCTCCGCCCTTTCTGGACAGGTTTGGGAAGAAGAAAGCAGTCAGTGCTGGGCCTTATTGGGGTGTGAAGCGCCTTGCTCTGCCCCTTCTGCTCACTGTGAAGGCCGCTGGATGCTTCTCTTAGGCATGGTTTAAGCCTCCGATTACTAAACCCCTTGCCCCACAAACGTCCACATTGACGAGCCTCTTTTTAGTAACTGCTTCCCCGTAATTCCTTCAGAGGTTGCTGTACCCTTCGCTGATGTGCTGCCCTCCTGTAAAACCTCCAGATGCCTTCCCACGTAATGCCCCTTTCAGATGCTTTAAGCTGAGAGCTTAAACCACAGGTACCATGGCTGACGCCTGCCAGGTTTCTGCTGCAGATAATCTATGATGGGAGGGGCATATTTTTTACTTCATTACTTATGTAAACTCTTGTTCCAGAAAGCTTTAATGTGTGTGGGAGTGTTCTGGGTCTATTAGGTCTGTGCGCATGGGTGTGGGCATTTGCCTGTGTCCACCGGGTGGGTCTCATTATGAAATGTATGTTTATGTAGGGCTTTAATGGCTGAAAATGGCAAAGAGATGAATAGACCACTTGGCCCCATGTGTAATTGCCAGGCCCCTTCTGTGCTCAAATGAGGTGTCCGAGTGAAGGTCAGCCCTTCCCTTCTGTATTTGGGGCCTATTTATGCCACCAGTAATTTTATAAGAAATCTGAATAGTTCTCCCCTTTGAGTGCATTTAACTCTTTAGTATCTTCTCTCTTACCTATTTGAGCCCCTCTAGCTACAGTCTGGCTTAAATGAAAGGGGAATTATATGCTTAAGAAAAAGTAGGACACGGTTGAGGCAGTTTGCTGACTGAATACGCGAAGAAGGACCTGATGGGCTCATATGCACCACTGCCATCACAGTCCCCATCGTGATGCAAGCTTATATGATTCTTGAGAAACAGCCCAGATCTCCTCTTAAGCGGAAAAGAGATTGACCTTCTAGCAGAGGCAAAGAATGGAGTCTTCTGGGGGCAGCTGCAAAGCGTTCTCCCTAGGACAGATGGAGCCTCCCTTTCCTCATCTACTCTGTGGGTGGTTTCAGGGCCCACGAGTCAACATGAGGAGTTGTGCTGGTGGTATGTGTGTTGGAGGCTGGGCTGGCTGATTCACAGTGACGAGGATGTCAATAATAACAAGAATGAGAATGATGGTACCTAATAAAGACTTTTTTTCCCAA</dnaseq>|
 
sequence = <dnaseq>CGCCCTCCGCAGACCTCCGCGCAGCGGCCGCGGGCGCGAGGGGAGGGGTCTGGAGCTCCCTCCGGCTGCCTGTCCCGCACCGGAGCCCGTGGGGTGGGGAGGTGTGCAGCCTGTGACAGACAGGGGCTTAGAGATGCAAACAGACTCAGGGAGAGAAACAGAAGCTGATTCTGTGACAGAAGCAGATCTGTGCAGCACAGATGCGGTGTGCGTGGGGAGGGGGTCGCCTGGGAGCGCATTGCGGAGTGCTTGTGTGTGCAGATTTTTCTCTGGGCTCAGGACTCATTGTATGTGGGTCAACACCTTCCTCCGTGACTGTGTTTTTGTTCTGAGCTGAGTTTTTTGGTTTGCCCTTAAAAAAATAATAATTTGGCATCCAGAGACTGGCAGACTGCCTCAGGGCCTGGACTGCGGATATATTGTGTTCTGCTTGAGGTTTGGGGAGGAGGGCAGGCGGTAGGAAGGGAGAGGGGGAGCTGTTTGTCACACTTTGCTGTAGAGCTGAGAGCACCTGACAAGCTTAAGGAAGTCGTTGGGCTATGTGGACAAGAAGGAGCCAGCTCCCAGCGGGTTCACAAGCTCTATCGGAGTTGAAAGCGTGGTCATGGCTCTAAGGAGCACCTCACGCCCTCCCTGTAGCTGTTATTGCAGTTTCAGGCAGAGATCCAGGAGCTGCAGAGGAAGGGAGAGGCACAATAACCTACATGGACCCAAGGGAGACATGTGTTCCTTTAAAAATGTGAACAGAAGGAAAAACAGAATGTGTGCAACTGGGGGTCTGAGGAAAGACTGTTTTGAAAGAGGCTGTCAGGGAATGGAAAGGGTTAAGCTTTTCATCCTGAAGAACCTGCTTCCCAAATCAGGCCTTCCTCCCATCACTAGACCCTGAGCAGCAGCTGGTCCTAGAGACCCCCCTCGTACTGCGCTGCCACAGTCTCATCCCATTTCCAGCTCTGTATTAACCACCAAGCTGCAGCGGATGGGGCAAGACCTAAGCTCATTAATTTCCAGGTGGAGGAAATGGAGGAGGGGCAGGTCCCTGCAGTAGAGGGAGGAGCAGAGAAAGGAGGCCAAGAGCTGGATCCTTCTGCCCAGGAAGCCTGCTGCATCCCTTCCCCCGAGCATGGCAGAGGCCTGGCTTTGCAAGGCCAAGGCCATAAGGGATGCTTAGGAGATTAATTTGATTCCTGACACAATAATCAAGCCCTAAGAGTCTCCACTGAAGCTTACTGAGGACTTCTTTCCTCTCCAAAGCCTCAGTCTAGCCTGCTAAATAAATTAGTATTCAGTGATGCCTTGGATCAGGGCCCCTCCCCGGCCTCAGTTTCCCCAAATATTTATTAAGTACCTACTGTGTGCAATCCTTGTGTAATTATTACCTCTTAGGCTCTTCATTTGCCCTCCTAAAGCAGTGTTTAGAGTCAGGCAGAGGTTAAGTGTGTTGCACCTCACCTAGATACTTCCAGAACCTTCTCTGGGTCTGCAGAATGTGGCACAACCTGCTTGCCCCCGCAGAGAGAAAGCTGCAGTGCACATCCTGCAGACTGCAGGTGCTGGGCTGCCTCTGGAGTCCCAGAAGGCAAGCTTGGCTGCAGGACAGAAAGGGAGAACAGCTTCTCTCACCCCTGAGCCTTCACAAGCCCTTGTCTATTTGCCGTTGCCTTCAAAATATACCTCCCCCGAAACCAGTAGCTTTCTGAGTCCTGGTGTCCCCTCCGCCCTTTCTGGACAGGTTTGGGAAGAAGAAAGCAGTCAGTGCTGGGCCTTATTGGGGTGTGAAGCGCCTTGCTCTGCCCCTTCTGCTCACTGTGAAGGCCGCTGGATGCTTCTCTTAGGCATGGTTTAAGCCTCCGATTACTAAACCCCTTGCCCCACAAACGTCCACATTGACGAGCCTCTTTTTAGTAACTGCTTCCCCGTAATTCCTTCAGAGGTTGCTGTACCCTTCGCTGATGTGCTGCCCTCCTGTAAAACCTCCAGATGCCTTCCCACGTAATGCCCCTTTCAGATGCTTTAAGCTGAGAGCTTAAACCACAGGTACCATGGCTGACGCCTGCCAGGTTTCTGCTGCAGATAATCTATGATGGGAGGGGCATATTTTTTACTTCATTACTTATGTAAACTCTTGTTCCAGAAAGCTTTAATGTGTGTGGGAGTGTTCTGGGTCTATTAGGTCTGTGCGCATGGGTGTGGGCATTTGCCTGTGTCCACCGGGTGGGTCTCATTATGAAATGTATGTTTATGTAGGGCTTTAATGGCTGAAAATGGCAAAGAGATGAATAGACCACTTGGCCCCATGTGTAATTGCCAGGCCCCTTCTGTGCTCAAATGAGGTGTCCGAGTGAAGGTCAGCCCTTCCCTTCTGTATTTGGGGCCTATTTATGCCACCAGTAATTTTATAAGAAATCTGAATAGTTCTCCCCTTTGAGTGCATTTAACTCTTTAGTATCTTCTCTCTTACCTATTTGAGCCCCTCTAGCTACAGTCTGGCTTAAATGAAAGGGGAATTATATGCTTAAGAAAAAGTAGGACACGGTTGAGGCAGTTTGCTGACTGAATACGCGAAGAAGGACCTGATGGGCTCATATGCACCACTGCCATCACAGTCCCCATCGTGATGCAAGCTTATATGATTCTTGAGAAACAGCCCAGATCTCCTCTTAAGCGGAAAAGAGATTGACCTTCTAGCAGAGGCAAAGAATGGAGTCTTCTGGGGGCAGCTGCAAAGCGTTCTCCCTAGGACAGATGGAGCCTCCCTTTCCTCATCTACTCTGTGGGTGGTTTCAGGGCCCACGAGTCAACATGAGGAGTTGTGCTGGTGGTATGTGTGTTGGAGGCTGGGCTGGCTGATTCACAGTGACGAGGATGTCAATAATAACAAGAATGAGAATGATGGTACCTAATAAAGACTTTTTTTCCCAA</dnaseq>|
 
}}
 
}}
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:Transcripts]]

Latest revision as of 03:46, 26 August 2015

Please input one-sentence summary here.

Annotated Information

Name

RNCR3: Retinal noncoding RNA 3

Characteristics

Intergenic, four exon transcript in mouse.

Gene contains a highly expressed, brain specific microRNA (mir124a-1) in an exon (Lagos-Quintana (2002)).

Function

Please input function information here.

Expression

Dynamic expression in mouse retinal development (Blackshaw (2004)).

Expressed throughout adult mouse brain with enriched expression in hippocampus subfields, Purkinje neurons of the cerebellum and the mitral layer of the olfactory bulb (Mercer (2010)).

Up-regulated during differentiation of GABAergic neurons in culture but downregulated during oligodendrocyte differentiation (Mercer (2010)).

Conservation

LncRNA is conserved in mammals and overlaps the LOC157627 noncoding Refseq gene in humans (Mercer (2010)).

Misc

Oct4, Nanog transcription factors are reported to bind to locus (Guttman (2009)).

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Regulation

Please input regulation information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID

lnc-TNKS-1:1

Source

LNCipedia2.1

Same with

,

Classification

intergenic

Length

2922 nt

Genomic location

chr8+:9757573..9760839

Exon number

,

Exons

,

Genome context

Sequence
000001 CGCCCTCCGC AGACCTCCGC GCAGCGGCCG CGGGCGCGAG GGGAGGGGTC TGGAGCTCCC TCCGGCTGCC TGTCCCGCAC 000080
000081 CGGAGCCCGT GGGGTGGGGA GGTGTGCAGC CTGTGACAGA CAGGGGCTTA GAGATGCAAA CAGACTCAGG GAGAGAAACA 000160
000161 GAAGCTGATT CTGTGACAGA AGCAGATCTG TGCAGCACAG ATGCGGTGTG CGTGGGGAGG GGGTCGCCTG GGAGCGCATT 000240
000241 GCGGAGTGCT TGTGTGTGCA GATTTTTCTC TGGGCTCAGG ACTCATTGTA TGTGGGTCAA CACCTTCCTC CGTGACTGTG 000320
000321 TTTTTGTTCT GAGCTGAGTT TTTTGGTTTG CCCTTAAAAA AATAATAATT TGGCATCCAG AGACTGGCAG ACTGCCTCAG 000400
000401 GGCCTGGACT GCGGATATAT TGTGTTCTGC TTGAGGTTTG GGGAGGAGGG CAGGCGGTAG GAAGGGAGAG GGGGAGCTGT 000480
000481 TTGTCACACT TTGCTGTAGA GCTGAGAGCA CCTGACAAGC TTAAGGAAGT CGTTGGGCTA TGTGGACAAG AAGGAGCCAG 000560
000561 CTCCCAGCGG GTTCACAAGC TCTATCGGAG TTGAAAGCGT GGTCATGGCT CTAAGGAGCA CCTCACGCCC TCCCTGTAGC 000640
000641 TGTTATTGCA GTTTCAGGCA GAGATCCAGG AGCTGCAGAG GAAGGGAGAG GCACAATAAC CTACATGGAC CCAAGGGAGA 000720
000721 CATGTGTTCC TTTAAAAATG TGAACAGAAG GAAAAACAGA ATGTGTGCAA CTGGGGGTCT GAGGAAAGAC TGTTTTGAAA 000800
000801 GAGGCTGTCA GGGAATGGAA AGGGTTAAGC TTTTCATCCT GAAGAACCTG CTTCCCAAAT CAGGCCTTCC TCCCATCACT 000880
000881 AGACCCTGAG CAGCAGCTGG TCCTAGAGAC CCCCCTCGTA CTGCGCTGCC ACAGTCTCAT CCCATTTCCA GCTCTGTATT 000960
000961 AACCACCAAG CTGCAGCGGA TGGGGCAAGA CCTAAGCTCA TTAATTTCCA GGTGGAGGAA ATGGAGGAGG GGCAGGTCCC 001040
001041 TGCAGTAGAG GGAGGAGCAG AGAAAGGAGG CCAAGAGCTG GATCCTTCTG CCCAGGAAGC CTGCTGCATC CCTTCCCCCG 001120
001121 AGCATGGCAG AGGCCTGGCT TTGCAAGGCC AAGGCCATAA GGGATGCTTA GGAGATTAAT TTGATTCCTG ACACAATAAT 001200
001201 CAAGCCCTAA GAGTCTCCAC TGAAGCTTAC TGAGGACTTC TTTCCTCTCC AAAGCCTCAG TCTAGCCTGC TAAATAAATT 001280
001281 AGTATTCAGT GATGCCTTGG ATCAGGGCCC CTCCCCGGCC TCAGTTTCCC CAAATATTTA TTAAGTACCT ACTGTGTGCA 001360
001361 ATCCTTGTGT AATTATTACC TCTTAGGCTC TTCATTTGCC CTCCTAAAGC AGTGTTTAGA GTCAGGCAGA GGTTAAGTGT 001440
001441 GTTGCACCTC ACCTAGATAC TTCCAGAACC TTCTCTGGGT CTGCAGAATG TGGCACAACC TGCTTGCCCC CGCAGAGAGA 001520
001521 AAGCTGCAGT GCACATCCTG CAGACTGCAG GTGCTGGGCT GCCTCTGGAG TCCCAGAAGG CAAGCTTGGC TGCAGGACAG 001600
001601 AAAGGGAGAA CAGCTTCTCT CACCCCTGAG CCTT